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2 forms found in the DOM

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Text Content

version

The NMPDR, SEED-based, prokaryotic genome annotation service.
For more information about The SEED please visit theSEED.org.

 * »Tutorials
   * Registering for RAST
   * Automated Assembly and RASTtk Workshop presentations
   * SEED and "Classic RAST" Workshop presentations
   * Downloading and installing the myRAST Toolkit
   * Scripting job submissions using the myRAST command-line interface
   * Downloading and installing the RASTtk Toolkit (Mac and Ubuntu)
   * General tutorial on using the myRAST command-line interface
   * Getting Started using IRIS
   * Getting Started using RASTtk
   * Other Tutorials
 * »Help
   * What is RAST
   * RAST FAQ
   * What is the SEED
   * HowTo use the SEED Viewer
   * Contact
   * Register
   * I forgot my Password

 

Info: RAST Access Problems


Click here for instructions on how to resolve several of the most common
problems accessing RAST or your RAST data.



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Comand-Line API "301 Permanently Moved" Errors


Click here for instructions on how to resolve "301 Permanently Moved" errors
when using the RAST batch command-line interface.



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To monitor RAST's load and view other news and statistics for RAST and the SEED,
please visit "The Daily SEED."



WELCOME TO RAST


» Register for a new account, service, or user-group
» Forgot your password?

LoginPassword


RAST JOB LOAD, LAST 24 HOURS


WHAT IS RAST?

RAST (Rapid Annotation using Subsystem Technology) is a fully-automated service
for annotating complete or nearly complete bacterial and archaeal genomes. It
provides high quality genome annotations for these genomes across the whole
phylogenetic tree.

We have a number of presentations and tutorials available:


 * Registering for RAST
 * The IRIS/Automated-Assembly/RASTtk Workshop Presentations and Tutorials
 * The SEED/"Classic-RAST" Workshop presentations and Tutorials
 * Downloading and installing the RASTtk Toolkit
 * Downloading and installing the myRAST Toolkit
 * The RAST batch submission interface (a part of myRAST)
 * Making manual improvements to RAST-annotated genomes (first tutorial). This
   is a powerpoint presentation; bring it up in slide-show mode and click
   through to see the animations and movies.
 * Making manual improvements to RAST-annotated genomes (second tutorial). This
   is a second tutorial on the topic of manually improving RAST annotations; it
   is also a powerpoint presentation with animations.



As the number of more or less complete bacterial and archaeal genome sequences
is constantly rising, the need for high quality automated initial annotations is
rising with it. In response to numerous requests for a SEED-quality automated
annotation service, we provide RAST as a free service to the community. It
leverages the data and procedures established within the SEED framework to
provide automated high quality gene calling and functional annotation. RAST
supports both the automated annotation of high quality genome sequences AND the
analysis of draft genomes. The service normally makes the annotated genome
available within 12-24 hours of submission.

Please note that while the SEED environment and SEED data structures (most
prominently FIGfams) are used to compute the automatic annotations, the data is
NOT added into the SEED automatically. Users can however request inclusion of a
their genome in the SEED. Once annotation is completed, genomes can be
downloaded in a variety of formats or viewed online. The genome annotation
provided does include a mapping of genes to subsystems and a metabolic
reconstruction.

To be able to contact you once the computation is finished and in case user
intervention is required, we request that users register with email address.

If you use the results of this annotation in your work, please cite:


 * The RAST Server: Rapid Annotations using Subsystems Technology.
   Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes
   S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA,
   McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R,
   Vassieva O, Vonstein V, Wilke A, Zagnitko O.
   BMC Genomics, 2008, [ PubMed entry ]
 * The SEED and the Rapid Annotation of microbial genomes using Subsystems
   Technology (RAST).
   Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes
   S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R.
   Nucleic Acids Res. 2014 [ PubMed entry ]
 * RASTtk: A modular and extensible implementation of the RAST algorithm for
   building custom annotation pipelines and annotating batches of genomes.
   Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R,
   Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein
   V, Wattam AR, Xia F.
   Sci Rep., 2015, [ PubMed entry ]

This project has been funded in whole or in part with Federal funds from the
National Institute of Allergy and Infectious Diseases, National Institutes of
Health, Department of Health and Human Services, under Contract No.
HHSN272200900040C and the National Science Foundation under Grant No. 0850546.