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fanta.bio Open in urlscan Pro
188.114.97.3  Public Scan

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URL: https://fanta.bio/
Submission: On November 29 via api from US — Scanned from NL

Form analysis 2 forms found in the DOM

<form data-sveltekit-reload="" class="grid w-full p-4 mt-8 bg-white rounded gap-y-4 md:gap-x-4 md:grid-cols-12 lg:mt-12">
  <div class="md:col-span-12">
    <h6 class="text-lg dark:text-white w-full text-gray-600 font-light">Search fanta.bio CREs with Keywords/External IDs</h6>
  </div>
  <div class="md:col-span-12"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="cre_id">Search Keywords for fanta.bio CREs</label>
    <div class="relative"> <input
        class="disabled:cursor-not-allowed disabled:opacity-50 rtl:text-right dark:focus:border-primary-500 dark:focus:ring-primary-500 dark:bg-gray-700 dark:text-white dark:placeholder-gray-400 dark:border-gray-600 bg-gray-50 border border-primary-700 text-gray-900 text-sm rounded-lg focus:ring-primary-500 focus:border-primary-500 block w-full p-2.5"
        id="cre_id" type="text"> </div>
  </div>
  <div class="md:col-span-6"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="organism">Organism</label>
    <div class="relative"><select
        class="dark:bg-gray-700 dark:border-gray-600 dark:placeholder-gray-400 dark:text-white dark:focus:ring-primary-500 dark:focus:border-primary-500 bg-gray-50 border border-primary-700 text-gray-900 text-sm rounded-lg focus:ring-primary-500 focus:border-primary-500 block w-full p-2.5"
        id="organism">
        <option disabled="" value="">Choose option ...</option>
        <option value="any">Any</option>
        <option value="human">Human</option>
        <option value="mouse">Mouse</option>
      </select></div>
  </div>
  <div class="md:col-span-6 flex flex-col justify-end h-full"><button type="submit"
      class="focus-within:ring-4 focus-within:outline-none dark:bg-primary-600 dark:hover:bg-primary-700 focus-within:ring-primary-300 dark:focus-within:ring-primary-800 cursor-not-allowed opacity-50 lg:h-11 justify-center min-w-full text-white bg-primary-700 hover:bg-primary-800 focus:ring-4 focus:outline-none focus:ring-primary-300 font-medium rounded-lg text-sm px-5 py-2.5 text-center inline-flex items-center mt-2"
      disabled="">Search</button></div>
  <div class="md:col-span-12" data-svelte-h="svelte-21dt4s">
    <p>
      <a href="/search/cre-advanced" class="inline-flex items-center font-normal text-sm text-primary-700 hover:underline">Advanced Search
				<svg class="w-4 h-4 ms-2 rtl:rotate-180" aria-hidden="true" xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 14 10"><path stroke="currentColor" stroke-linecap="round" stroke-linejoin="round" stroke-width="1" d="M1 5h12m0 0L9 1m4 4L9 9"></path></svg></a>
    </p>
  </div>
  <div class="md:col-span-12" data-svelte-h="svelte-3f7nbw">
    <p class="mt-4 text-xs text-gray-500">Use at least one search query to perform a search. You can combine multiple keywords. The search will be performed on the CRE ID, CRE Name, TFs and others, external identifiers, and Organism.</p>
  </div>
  <div class="md:col-span-12" data-svelte-h="svelte-1auq4go">
    <p class="text-xs text-gray-500">Examples of keywords: <a class="space-y-1 text-gray-600 hover:underline" href="/search/cre?q=Sox2&amp;organism=any&amp;action=search">Sox2</a>,
      <a class="space-y-1 text-gray-600 hover:underline" href="/search/cre?q=cp1%40sox2&amp;organism=any&amp;action=search">cp1@Sox2</a>,
      <a class="space-y-1 text-gray-600 hover:underline" href="/search/cre?q=FCHS_3013582&amp;organism=any&amp;action=search">FCHS_301358</a>,
      <a class="space-y-1 text-gray-600 hover:underline" href="/search/cre?q=MGI%3A98364&amp;organism=mouse&amp;action=search">MGI:98364</a>.</p>
  </div>
</form>

#

<form action="#" class="grid w-full p-4 mt-12 bg-white rounded gap-4 grid-cols-1 sm:grid-cols-2 lg:grid-cols-2">
  <div class="col-span-full">
    <h6 class="text-lg dark:text-white w-full text-gray-600 font-light">Search fanta.bio using UCSC Genome Browser</h6>
  </div>
  <div class="col-span-full sm:col-span-1 lg:col-span-1"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="organism">Organism</label>
    <div class="relative"><select
        class="dark:bg-gray-700 dark:border-gray-600 dark:placeholder-gray-400 dark:text-white dark:focus:ring-primary-500 dark:focus:border-primary-500 bg-gray-50 border border-primary-700 text-gray-900 text-sm rounded-lg focus:ring-primary-500 focus:border-primary-500 block w-full p-2.5"
        id="organism">
        <option disabled="" value="">Choose option ...</option>
        <option value="human">Human</option>
        <option value="mouse">Mouse</option>
      </select></div>
  </div>
  <div class="col-span-full sm:col-span-1 lg:col-span-1"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="assembly">Genome Assembly</label>
    <div class="relative"><select
        class="dark:bg-gray-700 dark:border-gray-600 dark:placeholder-gray-400 dark:text-white dark:focus:ring-primary-500 dark:focus:border-primary-500 bg-gray-50 border border-primary-700 text-gray-900 text-sm rounded-lg focus:ring-primary-500 focus:border-primary-500 block w-full p-2.5"
        id="assembly">
        <option disabled="" value="">Choose option ...</option>
        <option value="hg38">hg38</option>
        <option value="mm10">mm10</option>
      </select></div>
  </div>
  <div class="col-span-full sm:col-span-1 lg:col-span-1"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="symbol">Gene symbol or coordinates</label>
    <div class="relative"> <input
        class="disabled:cursor-not-allowed disabled:opacity-50 rtl:text-right dark:focus:border-primary-500 dark:focus:ring-primary-500 dark:bg-gray-700 dark:text-white dark:placeholder-gray-400 dark:border-gray-600 bg-gray-50 border border-primary-700 text-gray-900 text-sm rounded-lg focus:ring-primary-500 focus:border-primary-500 block w-full p-2.5"
        id="symbol" type="text"> </div>
  </div>
  <div class="col-span-full sm:col-span-1 lg:col-span-1"><label class="text-sm rtl:text-right font-medium dark:text-gray-300 block mb-2 text-gray-600" for="reset-gb">With the UCSC’s default tracks</label>
    <div class="relative"><label class="text-sm rtl:text-right font-medium text-gray-900 dark:text-gray-300 flex items-center mt-4"><input type="checkbox"
          class="w-4 h-4 bg-gray-100 border-gray-300 dark:ring-offset-gray-800 focus:ring-2 me-2 dark:bg-gray-700 dark:border-gray-600 sr-only peer rounded text-teal-600 focus:ring-teal-500 dark:focus:ring-teal-600" value="" id="reset-gb"> <span
          class="me-3 shrink-0 bg-gray-200 rounded-full peer-focus:ring-4 peer-checked:after:translate-x-full rtl:peer-checked:after:-translate-x-full peer-checked:after:border-white after:content-[''] after:absolute after:bg-white after:border-gray-300 after:border after:rounded-full after:transition-all dark:bg-gray-700 dark:border-gray-600 peer-focus:ring-teal-300 dark:peer-focus:ring-teal-800 peer-checked:bg-teal-600 w-11 h-6 after:top-0.5 after:start-[2px] after:h-5 after:w-5 relative"></span>
      </label></div>
  </div>
  <div class="col-span-full sm:col-span-1 lg:col-span-1 flex items-center justify-center"><button type="button"
      class="focus-within:ring-4 focus-within:outline-none dark:bg-primary-600 dark:hover:bg-primary-700 focus-within:ring-primary-300 dark:focus-within:ring-primary-800 cursor-not-allowed opacity-50 justify-center min-w-full text-white bg-primary-700 hover:bg-primary-800 focus:ring-4 focus:outline-none focus:ring-primary-300 font-medium rounded-lg text-sm px-5 py-2.5 text-center inline-flex items-center"
      disabled="">Go <svg aria-hidden="true" class="ml-2 -mr-1 w-5 h-5" fill="currentColor" viewBox="0 0 20 20" xmlns="http://www.w3.org/2000/svg">
        <path fill-rule="evenodd" d="M10.293 3.293a1 1 0 011.414 0l6 6a1 1 0 010 1.414l-6 6a1 1 0 01-1.414-1.414L14.586 11H3a1 1 0 110-2h11.586l-4.293-4.293a1 1 0 010-1.414z" clip-rule="evenodd"></path>
      </svg> <img src="/images/logos/ucsc-char-only.png" alt="" class="h-12 ml-6"></button></div>
  <div class="col-span-full sm:col-span-full lg:col-span-full" data-svelte-h="svelte-18trsz7">
    <p class="mt-4 text-xs text-gray-500">This search will take you out of fanta.bio and into the UCSC Genome Browser.</p>
  </div>
  <div class="col-span-full sm:col-span-full lg:col-span-full" data-svelte-h="svelte-1ilyeph">
    <p class="text-xs text-gray-500">Examples of keywords:
      <a class="space-y-1 text-gray-600 hover:underline" href="https://genome-asia.ucsc.edu/cgi-bin/hgTracks?hubUrl=https%3A%2F%2Fdata.fanta.bio%2Ftrackhub%2Fhub.txt&amp;db=hg38&amp;position=Sox2">Sox2 (human)</a>,
      <a class="space-y-1 text-gray-600 hover:underline" href="https://genome-asia.ucsc.edu/cgi-bin/hgTracks?hubUrl=https%3A%2F%2Fdata.fanta.bio%2Ftrackhub%2Fhub.txt&amp;db=hg38&amp;position=chr3:181710000-181720000">chr3:181710000-181720000 (human)</a>.
    </p>
  </div>
</form>

Text Content

 
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A collection of functional genome annotations with transcriptional activities.

SEARCH FANTA.BIO CRES WITH KEYWORDS/EXTERNAL IDS

Search Keywords for fanta.bio CREs

Organism
Choose option ...AnyHumanMouse
Search

Advanced Search

Use at least one search query to perform a search. You can combine multiple
keywords. The search will be performed on the CRE ID, CRE Name, TFs and others,
external identifiers, and Organism.

Examples of keywords: Sox2, cp1@Sox2, FCHS_301358, MGI:98364.

SEARCH FANTA.BIO USING UCSC GENOME BROWSER

Organism
Choose option ...HumanMouse
Genome Assembly
Choose option ...hg38mm10
Gene symbol or coordinates

With the UCSC’s default tracks

Go

This search will take you out of fanta.bio and into the UCSC Genome Browser.

Examples of keywords: Sox2 (human), chr3:181710000-181720000 (human).

UPDATES

 * September 20, 2024:
   
   Release of fanta.bio CRE data version 1.1.0. Check the latest fanta.bio data
   documentation for details

 * February 26, 2024:
   
   Release of fanta.bio CRE data version 1.0.0. Check the latest fanta.bio data
   documentation for details

 * October 05, 2023:
   
   Release of the CRE annotation pages and their search interface.

 * March 28, 2023:
   
   Initial release of the fanta.bio data alpha version 0.1 of fanta.bio
   database.

fanta.bio (Functional genome ANnotations with Transcriptional Activities) is a
database that collects functional annotations of genomes for studying gene
regulation, with a primary focus on cis-regulatory elements (CREs) such as
promoters and enhancers.

Read more about fanta.bio

Fanta.bio is a collection of functional genome annotations with transcriptional
activities. This database is supported by JST NBDC Grant Number JPMJND2202

Fanta.bio website is licensed under a Creative Commons Attribution 4.0
International License.
CRE data version: v1.1.0 , Website version: v1.0.3-beta.1

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