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We are using pathogen genomics to investigate how viruses, including
arenaviruses, filoviruses, coronaviruses, orthopoxviruses, and arboviruses
emerge, evolve, and cause large-scale outbreaks. Using a combination of
computational biology, experimentation, and 'field' work, we aim to transform
outbreak response and change the way we develop and apply effective
countermeasures.
Publications
People
ANDERSEN LAB AT SCRIPPS RESEARCH
At the Andersen Lab at Scripps Research we try to understand questions such as:
how do viruses emerge, spread, evolve, and go from causing small-scale outbreaks
to large-scale epidemics? How can we diagnose them better and discover novel
ones? How do they develop resistance to countermeasures and what molecular and
immunological factors govern the underlying mechanisms? Critically, by
addressing these questions, can we develop new and effective vaccines and
medicines, while informing outbreak responses? The research in our laboratory is
aimed at tackling these questions using an integrated approach of computation,
experimentation, genomics, and large-scale data analysis. We also more broadly
employ quantitative approaches across scientific disciplines, ranging from
microbiology to human immunology and genetics.
The Andersen Laboratory was established at Scripps Research in the summer of
2015 in beautiful La Jolla, California. We are strong proponents of open data
and open science, and we are big believers in collaborating across scientific
disciplines. To this end, we are actively engaged in several of our research
initiatives, including the Global Health Initiative at Scripps Research, the
Center for Viral Systems Biology, the Viral Hemorrhagic Fever Consortium, the
West African Research Network for Infectious Diseases, SEARCH, and the WestNile
4K Project.
Ready to learn more about the lab? Check out the people working here, our
research, publications, and data.
COVID-19 / SARS-COV-2 RESOURCES
PEOPLE
*
KRISTIAN
Boss Man
ANDREW
Also Boss
KARTHIK
Another Boss
REFUGIO
Cat Herder
*
MICHELLE
Cat Herder
EMILY
Guru
MARK
Senior Genius
EDYTH
Senior Genius
*
JOSH
Senior Genius
JYOTHI
Senior Genius
HOLLY
Senior Genius
BRADY
Senior Genius
*
CHRISSY
Junior Genius
PRANEETH
Junior Genius
EMORY
Mini Genius
DYLAN
Mini Genius
*
MARYAM
Mini Genius
ALISON
Mini Genius
ALANA
Mini Genius
CAMILLE
Mini Genius
*
ALLISON
Mini Genius
KELLY
Mini Genius
CHRISTINA
Mini Genius
NOODLE
Supreme Commander
OUR INITIATIVES
NEWS
Narrative
PRELIMINARY REPORT ON H5N1 IN CATTLE
During the winter of 2020-2021, a new genotype of highly-pathogenic (HP) H5N1
avian influenza A virus emerged in Europe, comprising a reassortant between the
epizootic HP clade 2.3.4.4b H5N8 and local low pathogenicity wildfowl strains.
This new genotype caused record levels of infections in farmed poultry
throughout Europe and quickly traveled, via waterfowl flyways, into North
America, Africa and East…
Publications
SEARCH PAPER OUT IN CELL
Elucidating human contact networks could help predict and prevent the
transmission of SARS-CoV-2 and future pandemic threats. A new study from Scripps
Research scientists and collaborators points to which public health protocols
worked to mitigate the spread of COVID-19—and which ones didn’t. In the study,
published online in Cell on December 14, 2023, the Scripps Research-led team of
scientists investigated the efficacy…
Other
DISCRIMINATION IN SCIENCE
Recently one of our colleagues made comments at a scientific meeting about male
scientists being the subject of discrimination. In a follow up interview, he
suggested that discussions about diversity, equity, and inclusion in science
were not welcome or appropriate topics for scientific meetings. While we respect
each individual’s right to their own views, we do not believe that either of
these…
ABOUT
Scripps Research
La Jolla, CA 92037
United States
lab@andersen-lab.com
NAVIGATION
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* About
NEWS
*
Preliminary Report on H5N1 in Cattle May 3, 2024
*
SEARCH Paper out in Cell December 14, 2023
*
Discrimination in science December 4, 2023
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* Heroes
* Mysteries
* Poetry
* Gossip
* Tales
* Hello
* Secrets
* Back
* DataActive Projects
* Back
* Lassa-Ebola HLA
* Moo Flu Genomics
* SARS-CoV-1 Evolution
* SARS-CoV-2 Evolution
* SARS-CoV-2 Genomics
* WestNile 4K
* Archived DataArchived Projects
* Back
* Bat Metagenomics
* Dengue Genomics
* Ebola Epidemiology
* West Nile Genomics – California
* Zika Epidemiology
* Zika Functional Evolution
* Zika Genomics
* Zika Phylogeography
* SoftwareSoftware
* Back
* iVar
* Freyja
* Björn
* Outbreakinfo
* ProtocolsProtocols
* Back
* SARS-CoV-2 Sequencing
* COVID-19 Testing
* Lassa virus Sequencing
* MinION PrimalSeq
* MiSeq PrimalSeq
* Zika Plaque Assay
* TalksTalks
* Back
* Slides
* Video Recordings
* The Big SecretThe Big Secret
* Back
* Panic?