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Submitted URL:
http://oncomx.org/
Effective URL:
https://oncomx.org/
Submission: On November 09 via api (November 9th 2024, 3:04:35 am UTC) from US — Scanned from IT

Form analysis
4 forms found in the DOM

<form class="form-horizontal" role="form" id="filter_bmuta_form">
  <div class="panel panel-success" style="width:100%;">
    <div class="panel-heading" style="width:100%">Mutation Filters<span class="pull-right clickable"><i class="glyphicon glyphicon-chevron-down"></i></span></div>
    <div class="panel-body" style="padding:4px; width:100%;">
      <div class="form-group col-xs-4">
        <label for="bmuta_cancer_type_filter">Cancer Type</label>
        <select class="form-control" id="bmuta_cancer_type_filter">
          <option value="" selected="">All</option>
          <option value="DOID:11054 / Urinary bladder cancer [UBC]">DOID:11054 / Urinary bladder cancer [UBC]</option>
          <option value="DOID:5041 / Esophageal cancer [EC]">DOID:5041 / Esophageal cancer [EC]</option>
          <option value="DOID:1324 / Lung cancer [Lunca] &amp; DOID:3907 / Lung squamous cell carcinoma">DOID:1324 / Lung cancer [Lunca] &amp; DOID:3907 / Lung squamous cell carcinoma</option>
          <option value="DOID:1781 / Thyroid cancer [Thyca]">DOID:1781 / Thyroid cancer [Thyca]</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; DOID:4465 / Papillary renal cell carcinoma">DOID:263 / Kidney cancer [Kidca] &amp; DOID:4465 / Papillary renal cell carcinoma</option>
          <option value="DOID:3571 / Liver cancer [Livca]">DOID:3571 / Liver cancer [Livca]</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; Kidney renal clear cell carcinoma">DOID:263 / Kidney cancer [Kidca] &amp; Kidney renal clear cell carcinoma</option>
          <option value="DOID:10534 / Stomach cancer [Stoca]">DOID:10534 / Stomach cancer [Stoca]</option>
          <option value="DOID:219 / Colon cancer [Colca] &amp; DOID:234 / Colon adenocarcinoma">DOID:219 / Colon cancer [Colca] &amp; DOID:234 / Colon adenocarcinoma</option>
          <option value="DOID:1324 / Lung cancer [Lunca] &amp; DOID:3910 / Lung adenocarcinoma">DOID:1324 / Lung cancer [Lunca] &amp; DOID:3910 / Lung adenocarcinoma</option>
          <option value="DOID:11934 / Head and neck cancer [H&amp;NC]">DOID:11934 / Head and neck cancer [H&amp;NC]</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; DOID:4471 / Chromophobe adenocarcinoma">DOID:263 / Kidney cancer [Kidca] &amp; DOID:4471 / Chromophobe adenocarcinoma</option>
          <option value="DOID:1612 / Breast cancer [BRCA]">DOID:1612 / Breast cancer [BRCA]</option>
          <option value="DOID:10283 / Prostate cancer [PCa]">DOID:10283 / Prostate cancer [PCa]</option>
          <option value="DOID:9256 / Colorectal cancer [Corca] &amp; DOID:0050861 / Colorectal adenocarcinoma">DOID:9256 / Colorectal cancer [Corca] &amp; DOID:0050861 / Colorectal adenocarcinoma</option>
          <option value="DOID:8618 / Oral cavity cancer [OCC] &amp; DOID:0050866 / Oral squamous cell carcinoma">DOID:8618 / Oral cavity cancer [OCC] &amp; DOID:0050866 / Oral squamous cell carcinoma</option>
          <option value="DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:0060058 / Lymphoma">DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:0060058 / Lymphoma</option>
          <option value="DOID:1612 / Breast cancer [BRCA] &amp; DOID:0060075 / Estrogen-receptor positive breast cancer">DOID:1612 / Breast cancer [BRCA] &amp; DOID:0060075 / Estrogen-receptor positive breast cancer</option>
          <option value="DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:1040 / Chronic lymphocytic leukemia">DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:1040 / Chronic lymphocytic leukemia</option>
          <option value="DOID:5041 / Esophageal cancer [EC] &amp; DOID:1107 / Esophageal carcinoma">DOID:5041 / Esophageal cancer [EC] &amp; DOID:1107 / Esophageal carcinoma</option>
          <option value="DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:1240 / Leukemia">DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:1240 / Leukemia</option>
          <option value="DOID:1324 / Lung cancer [Lunca]">DOID:1324 / Lung cancer [Lunca]</option>
          <option value="DOID:363 / Uterine cancer [Uteca] &amp; DOID:1380 / Endometrial cancer">DOID:363 / Uterine cancer [Uteca] &amp; DOID:1380 / Endometrial cancer</option>
          <option value="DOID:1793 / Pancreatic cancer [PACA]">DOID:1793 / Pancreatic cancer [PACA]</option>
          <option value="DOID:1909 / Melanoma [Melan]">DOID:1909 / Melanoma [Melan]</option>
          <option value="DOID:2394 / Ovarian cancer [OVCA] &amp; DOID:2152 / Epithelial ovarian cancer">DOID:2394 / Ovarian cancer [OVCA] &amp; DOID:2152 / Epithelial ovarian cancer</option>
          <option value="DOID:219 / Colon cancer [Colca]">DOID:219 / Colon cancer [Colca]</option>
          <option value="DOID:2394 / Ovarian cancer [OVCA]">DOID:2394 / Ovarian cancer [OVCA]</option>
          <option value="DOID:10283 / Prostate cancer [PCa] &amp; DOID:2526 / Prostate adenocarcinoma">DOID:10283 / Prostate cancer [PCa] &amp; DOID:2526 / Prostate adenocarcinoma</option>
          <option value="DOID:2596 / Larynx cancer [Larca]">DOID:2596 / Larynx cancer [Larca]</option>
          <option value="DOID:2596 / Larynx cancer [Larca] &amp; DOID:2600 / Laryngeal carcinoma">DOID:2596 / Larynx cancer [Larca] &amp; DOID:2600 / Laryngeal carcinoma</option>
          <option value="DOID:4362 / Cervical cancer [Cerca] &amp; DOID:2893 / Cervix carcinoma">DOID:4362 / Cervical cancer [Cerca] &amp; DOID:2893 / Cervix carcinoma</option>
          <option value="DOID:3070 / Malignant glioma [MG] &amp; DOID:3069 / Astrocytoma">DOID:3070 / Malignant glioma [MG] &amp; DOID:3069 / Astrocytoma</option>
          <option value="DOID:3119 / Gastrointestinal system cancer [Gasca]">DOID:3119 / Gastrointestinal system cancer [Gasca]</option>
          <option value="DOID:4159 / Skin cancer [Skica] &amp; DOID:3151 / Skin squamous cell carcinoma">DOID:4159 / Skin cancer [Skica] &amp; DOID:3151 / Skin squamous cell carcinoma</option>
          <option value="DOID:1612 / Breast cancer [BRCA] &amp; DOID:3459 / Breast carcinoma">DOID:1612 / Breast cancer [BRCA] &amp; DOID:3459 / Breast carcinoma</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; DOID:3672 / Rhabdoid cancer">DOID:263 / Kidney cancer [Kidca] &amp; DOID:3672 / Rhabdoid cancer</option>
          <option value="DOID:10534 / Stomach cancer [Stoca] &amp; DOID:3717 / Stomach adenocarcinoma">DOID:10534 / Stomach cancer [Stoca] &amp; DOID:3717 / Stomach adenocarcinoma</option>
          <option value="DOID:1324 / Lung cancer [Lunca] &amp; DOID:3905 / Lung carcinoma">DOID:1324 / Lung cancer [Lunca] &amp; DOID:3905 / Lung carcinoma</option>
          <option value="DOID:1324 / Lung cancer [Lunca] &amp; DOID:3908 / Non-small cell lung carcinoma [NSCLC]">DOID:1324 / Lung cancer [Lunca] &amp; DOID:3908 / Non-small cell lung carcinoma [NSCLC]</option>
          <option value="DOID:1781 / Thyroid cancer [Thyca] &amp; DOID:3963 / Thyroid carcinoma">DOID:1781 / Thyroid cancer [Thyca] &amp; DOID:3963 / Thyroid carcinoma</option>
          <option value="DOID:11054 / Urinary bladder cancer [UBC] &amp; DOID:4007 / Bladder carcinoma">DOID:11054 / Urinary bladder cancer [UBC] &amp; DOID:4007 / Bladder carcinoma</option>
          <option value="DOID:1793 / Pancreatic cancer [PACA] &amp; DOID:4074 / Pancreas adenocarcinoma">DOID:1793 / Pancreatic cancer [PACA] &amp; DOID:4074 / Pancreas adenocarcinoma</option>
          <option value="DOID:4362 / Cervical cancer [Cerca]">DOID:4362 / Cervical cancer [Cerca]</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; DOID:4450 / Renal cell carcinoma">DOID:263 / Kidney cancer [Kidca] &amp; DOID:4450 / Renal cell carcinoma</option>
          <option value="DOID:263 / Kidney cancer [Kidca] &amp; DOID:4467 / Renal clear cell carcinoma">DOID:263 / Kidney cancer [Kidca] &amp; DOID:4467 / Renal clear cell carcinoma</option>
          <option value="DOID:1324 / Lung cancer [Lunca] &amp; DOID:5409 / Lung small cell carcinoma">DOID:1324 / Lung cancer [Lunca] &amp; DOID:5409 / Lung small cell carcinoma</option>
          <option value="DOID:3571 / Liver cancer [Livca] &amp; DOID:684 / Hepatocellular carcinoma">DOID:3571 / Liver cancer [Livca] &amp; DOID:684 / Hepatocellular carcinoma</option>
          <option value="DOID:11054 / Urinary bladder cancer [UBC] &amp; DOID:7244 / Bladder urachal urothelial carcinoma">DOID:11054 / Urinary bladder cancer [UBC] &amp; DOID:7244 / Bladder urachal urothelial carcinoma</option>
          <option value="DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:8552 / Chronic myeloid leukemia">DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:8552 / Chronic myeloid leukemia</option>
          <option value="DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:9119 / Acute myeloid leukemia">DOID:2531 / Hematologic cancer [Hemca] &amp; DOID:9119 / Acute myeloid leukemia</option>
          <option value="DOID:9256 / Colorectal cancer [CRC]">DOID:9256 / Colorectal cancer [CRC]</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="bmuta_polyphen_filter">PolyPhen</label>
        <select class="form-control" id="bmuta_polyphen_filter">
          <option value="" selected="">All</option>
          <option value="possibly damaging">possibly damaging</option>
          <option value="probably damaging">probably damaging</option>
          <option value="benign">benign</option>
          <option value="-">-</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="bmuta_mutation_function_filter">Mutation Function</label>
        <select class="form-control" id="bmuta_mutation_function_filter">
          <option value="" selected="">All</option>
          <option value="-">-</option>
          <option value="Gain|Phosphorylation">Gain|Phosphorylation</option>
          <option value="Loss|Binding Site">Loss|Binding Site</option>
          <option value="Gain|Glycosylation">Gain|Glycosylation</option>
          <option value="Loss|Ubiquitylation">Loss|Ubiquitylation</option>
          <option value="Loss|Phosphorylation">Loss|Phosphorylation</option>
          <option value="Loss|N-linked Glycosylation">Loss|N-linked Glycosylation</option>
          <option value="Loss|Methylation">Loss|Methylation</option>
          <option value="Loss|+2 from N-linked Glycosylation">Loss|+2 from N-linked Glycosylation</option>
          <option value="Loss|+1 from N-linked Glycosylation">Loss|+1 from N-linked Glycosylation</option>
          <option value="Loss|Active Site">Loss|Active Site</option>
          <option value="Loss|S-Nitrosylation">Loss|S-Nitrosylation</option>
          <option value="Loss|Acetylation">Loss|Acetylation</option>
          <option value="Loss|Hydroxylation">Loss|Hydroxylation</option>
          <option value="Loss|O-linked Glycosylation">Loss|O-linked Glycosylation</option>
          <option value="Loss|Crotonylation">Loss|Crotonylation</option>
          <option value="Loss|Other Modified Residue">Loss|Other Modified Residue</option>
          <option value="Loss|Sumoylation">Loss|Sumoylation</option>
          <option value="Loss|C-linked Glycosylation">Loss|C-linked Glycosylation</option>
          <option value="Loss|Gamma-carboxyglutamic acid">Loss|Gamma-carboxyglutamic acid</option>
          <option value="Loss|Myristation">Loss|Myristation</option>
          <option value="Loss|Palmitoylation">Loss|Palmitoylation</option>
          <option value="Loss|Amidation">Loss|Amidation</option>
          <option value="Loss|Sulfation">Loss|Sulfation</option>
          <option value="Loss|Prenylation">Loss|Prenylation</option>
          <option value="Loss|Binding Site|RefSeq CDD|Substrate binding site">Loss|Binding Site|RefSeq CDD|Substrate binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|ATP binding site">Loss|Binding Site|RefSeq CDD|ATP binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|GEF interaction site">Loss|Binding Site|RefSeq CDD|GEF interaction site</option>
          <option value="Loss|Binding Site|RefSeq CDD|zinc binding site">Loss|Binding Site|RefSeq CDD|zinc binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|DNA binding site">Loss|Binding Site|RefSeq CDD|DNA binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|Ca2+ binding site">Loss|Binding Site|RefSeq CDD|Ca2+ binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|DNA-binding site">Loss|Binding Site|RefSeq CDD|DNA-binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|ligand binding site">Loss|Binding Site|RefSeq CDD|ligand binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|antiparallel homodimerization interface">Loss|Binding Site|RefSeq CDD|antiparallel homodimerization interface</option>
          <option value="Loss|Binding Site|RefSeq CDD|parallel homodimerization interface">Loss|Binding Site|RefSeq CDD|parallel homodimerization interface</option>
          <option value="Loss|Binding Site|RefSeq CDD|cross-brace motif">Loss|Binding Site|RefSeq CDD|cross-brace motif</option>
          <option value="Loss|Binding Site|RefSeq CDD|dimer interface">Loss|Binding Site|RefSeq CDD|dimer interface</option>
          <option value="Loss|Binding Site|RefSeq CDD|ephrin binding site">Loss|Binding Site|RefSeq CDD|ephrin binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|GoLoco binding site">Loss|Binding Site|RefSeq CDD|GoLoco binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|peptide ligand binding site">Loss|Binding Site|RefSeq CDD|peptide ligand binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|trimer interface">Loss|Binding Site|RefSeq CDD|trimer interface</option>
          <option value="Loss|Binding Site|RefSeq CDD|sugar binding site">Loss|Binding Site|RefSeq CDD|sugar binding site</option>
          <option value="Loss|Binding Site|RefSeq CDD|Interdomain contacts">Loss|Binding Site|RefSeq CDD|Interdomain contacts</option>
          <option value="Loss|Binding Site|RefSeq CDD|metal binding site">Loss|Binding Site|RefSeq CDD|metal binding site</option>
        </select>
      </div>
    </div>
  </div>
</form>

<form class="form-horizontal" role="form" id="filter_litmine_form">
  <div class="panel panel-success" style="width:100%;">
    <div class="panel-heading" style="width:100%">Literature Mining Filters<span class="pull-right clickable"><i class="glyphicon glyphicon-chevron-down"></i></span></div>
    <div class="panel-body" style="padding:4px; width:100%;">
      <div class="form-group col-xs-4 litdimex_filter_class lungdexter_filter_class">
        <label for="litmine_gene_symbol_filter">Gene Symbol</label>
        <input type="text" class="form-control" placeholder="Search for a gene name" id="litmine_gene_symbol_filter">
      </div>
      <div class="form-group col-xs-4 litdimex_filter_class lungdexter_filter_class">
        <label for="litmine_gene_mention_filter">Gene Mention</label>
        <input type="text" class="form-control" placeholder="Search for a gene name" id="litmine_gene_mention_filter">
      </div>
      <div class="form-group col-xs-4 lungdexter_filter_class">
        <label for="litmine_dexter_ontology_filter">Disease Ontology</label>
        <select class="form-control" id="litmine_dexter_ontology_filter">
          <option value="" selected="">All</option>
          <option value="breast cancer">breast cancer</option>
          <option value="large intestine cancer">large intestine cancer</option>
          <option value="lung cancer">lung cancer</option>
          <option value="tongue squamous cell carcinoma">tongue squamous cell carcinoma</option>
          <option value="melanoma">melanoma</option>
          <option value="acute myeloid leukemia">acute myeloid leukemia</option>
          <option value="urinary bladder cancer">urinary bladder cancer</option>
          <option value="adenocarcinoma">adenocarcinoma</option>
          <option value="thyroid carcinoma">thyroid carcinoma</option>
          <option value="hepatocellular carcinoma">hepatocellular carcinoma</option>
          <option value="stomach cancer">stomach cancer</option>
          <option value="papillary thyroid carcinoma">papillary thyroid carcinoma</option>
          <option value="b- and t-cell mixed leukemia">b- and t-cell mixed leukemia</option>
          <option value="colon cancer">colon cancer</option>
          <option value="skin cancer">skin cancer</option>
          <option value="squamous cell carcinoma">squamous cell carcinoma</option>
          <option value="pancreatic ductal carcinoma">pancreatic ductal carcinoma</option>
          <option value="osteosarcoma">osteosarcoma</option>
          <option value="non-small cell lung carcinoma">non-small cell lung carcinoma</option>
          <option value="acute promyelocytic leukemia">acute promyelocytic leukemia</option>
          <option value="salivary gland adenoid cystic carcinoma">salivary gland adenoid cystic carcinoma</option>
          <option value="colorectal cancer">colorectal cancer</option>
          <option value="kidney cancer">kidney cancer</option>
          <option value="renal cell carcinoma">renal cell carcinoma</option>
          <option value="cervical cancer">cervical cancer</option>
          <option value="prostate cancer">prostate cancer</option>
          <option value="cancer">cancer</option>
          <option value="intrahepatic cholangiocarcinoma">intrahepatic cholangiocarcinoma</option>
          <option value="malignant glioma">malignant glioma</option>
          <option value="endometrial cancer">endometrial cancer</option>
          <option value="ovarian cancer">ovarian cancer</option>
          <option value="head and neck squamous cell carcinoma">head and neck squamous cell carcinoma</option>
          <option value="gastrointestinal system cancer">gastrointestinal system cancer</option>
          <option value="oral squamous cell carcinoma">oral squamous cell carcinoma</option>
          <option value="multiple myeloma">multiple myeloma</option>
          <option value="b-cell lymphoma">b-cell lymphoma</option>
          <option value="carcinoma">carcinoma</option>
          <option value="nasopharynx carcinoma">nasopharynx carcinoma</option>
          <option value="uveal melanoma">uveal melanoma</option>
          <option value="endometrial carcinoma">endometrial carcinoma</option>
          <option value="esophagus squamous cell carcinoma">esophagus squamous cell carcinoma</option>
          <option value="nsclc">nsclc</option>
          <option value="serous cystadenocarcinoma">serous cystadenocarcinoma</option>
          <option value="cholangiocarcinoma">cholangiocarcinoma</option>
          <option value="adult t-cell leukemia">adult t-cell leukemia</option>
          <option value="glioblastoma multiforme">glioblastoma multiforme</option>
          <option value="lung small cell carcinoma">lung small cell carcinoma</option>
          <option value="hcc">hcc</option>
          <option value="liver cancer">liver cancer</option>
          <option value="thyroid cancer">thyroid cancer</option>
          <option value="pancreatic cancer">pancreatic cancer</option>
          <option value="chondrosarcoma">chondrosarcoma</option>
          <option value="chronic lymphocytic leukemia">chronic lymphocytic leukemia</option>
          <option value="reticulosarcoma">reticulosarcoma</option>
          <option value="esophageal cancer">esophageal cancer</option>
          <option value="breast ductal carcinoma">breast ductal carcinoma</option>
          <option value="mantle cell lymphoma">mantle cell lymphoma</option>
          <option value="lymphoid leukemia">lymphoid leukemia</option>
          <option value="head and neck cancer">head and neck cancer</option>
          <option value="nephroblastoma">nephroblastoma</option>
          <option value="endometrial adenocarcinoma">endometrial adenocarcinoma</option>
          <option value="lung adenocarcinoma">lung adenocarcinoma</option>
          <option value="medulloblastoma">medulloblastoma</option>
          <option value="primary cancer">primary cancer</option>
          <option value="hypopharyngeal cancer">hypopharyngeal cancer</option>
          <option value="astrocytoma">astrocytoma</option>
          <option value="leukemia">leukemia</option>
          <option value="gbm">gbm</option>
          <option value="monoclonal gammopathy of uncertain significance">monoclonal gammopathy of uncertain significance</option>
          <option value="lung oat cell carcinoma">lung oat cell carcinoma</option>
          <option value="chronic myeloid leukemia">chronic myeloid leukemia</option>
          <option value="lymphoma">lymphoma</option>
          <option value="hodgkin's lymphoma">hodgkin's lymphoma</option>
          <option value="basal cell carcinoma">basal cell carcinoma</option>
          <option value="hepatoblastoma">hepatoblastoma</option>
          <option value="retinoblastoma">retinoblastoma</option>
          <option value="transitional cell carcinoma">transitional cell carcinoma</option>
          <option value="laryngeal squamous cell carcinoma">laryngeal squamous cell carcinoma</option>
          <option value="myelodysplastic syndrome">myelodysplastic syndrome</option>
          <option value="oral cavity cancer">oral cavity cancer</option>
          <option value="gastrointestinal stromal tumor">gastrointestinal stromal tumor</option>
          <option value="biliary tract cancer">biliary tract cancer</option>
          <option value="hodgkin's lymphoma, lymphocytic-histiocytic predominance">hodgkin's lymphoma, lymphocytic-histiocytic predominance</option>
          <option value="gallbladder cancer">gallbladder cancer</option>
          <option value="mammary cancer">mammary cancer</option>
          <option value="malignant mesothelioma">malignant mesothelioma</option>
          <option value="neuroblastoma">neuroblastoma</option>
          <option value="colon adenocarcinoma">colon adenocarcinoma</option>
          <option value="testicular cancer">testicular cancer</option>
          <option value="tongue cancer">tongue cancer</option>
          <option value="esophagus adenocarcinoma">esophagus adenocarcinoma</option>
          <option value="adrenocortical carcinoma">adrenocortical carcinoma</option>
          <option value="rectal cancer">rectal cancer</option>
          <option value="malignant neoplasm">malignant neoplasm</option>
          <option value="colon carcinoma">colon carcinoma</option>
          <option value="squamous carcinoma">squamous carcinoma</option>
          <option value="pancreatic carcinoma">pancreatic carcinoma</option>
          <option value="mycosis fungoides">mycosis fungoides</option>
          <option value="cervical squamous cell carcinoma">cervical squamous cell carcinoma</option>
          <option value="nasopharynx cancer">nasopharynx cancer</option>
          <option value="seminoma">seminoma</option>
          <option value="t-cell leukemia">t-cell leukemia</option>
          <option value="heart cancer">heart cancer</option>
          <option value="brain cancer">brain cancer</option>
          <option value="laryngeal carcinoma">laryngeal carcinoma</option>
          <option value="hemorrhagic thrombocythemia">hemorrhagic thrombocythemia</option>
          <option value="systemic mastocytosis">systemic mastocytosis</option>
          <option value="bone giant cell tumor">bone giant cell tumor</option>
          <option value="thymic carcinoma">thymic carcinoma</option>
          <option value="chordoma">chordoma</option>
          <option value="parathyroid carcinoma">parathyroid carcinoma</option>
          <option value="liposarcoma">liposarcoma</option>
          <option value="colorectal adenocarcinoma">colorectal adenocarcinoma</option>
          <option value="myeloproliferative neoplasm">myeloproliferative neoplasm</option>
          <option value="larynx cancer">larynx cancer</option>
          <option value="hematologic cancer">hematologic cancer</option>
          <option value="pituitary cancer">pituitary cancer</option>
          <option value="salivary gland cancer">salivary gland cancer</option>
          <option value="malignant fibroxanthoma">malignant fibroxanthoma</option>
          <option value="retroperitoneal leiomyosarcoma">retroperitoneal leiomyosarcoma</option>
          <option value="lymphoblastic leukemia">lymphoblastic leukemia</option>
          <option value="mucoepidermoid carcinoma">mucoepidermoid carcinoma</option>
          <option value="bone cancer">bone cancer</option>
          <option value="nasopharyngeal carcinoma">nasopharyngeal carcinoma</option>
          <option value="trophoblastic neoplasm">trophoblastic neoplasm</option>
          <option value="skin benign neoplasm">skin benign neoplasm</option>
          <option value="lung squamous cell carcinoma">lung squamous cell carcinoma</option>
          <option value="rhabdomyosarcoma">rhabdomyosarcoma</option>
          <option value="familial retinoblastoma">familial retinoblastoma</option>
          <option value="dermatofibrosarcoma protuberans">dermatofibrosarcoma protuberans</option>
          <option value="sarcoma">sarcoma</option>
          <option value="ovarian serous cystadenocarcinoma">ovarian serous cystadenocarcinoma</option>
          <option value="ewing sarcoma">ewing sarcoma</option>
          <option value="carcinosarcoma">carcinosarcoma</option>
          <option value="neuroendocrine carcinoma">neuroendocrine carcinoma</option>
          <option value="testicular germ cell cancer">testicular germ cell cancer</option>
          <option value="penile cancer">penile cancer</option>
          <option value="mf">mf</option>
          <option value="spinal meningioma">spinal meningioma</option>
          <option value="neuroendocrine tumor">neuroendocrine tumor</option>
          <option value="astrocytic tumor">astrocytic tumor</option>
          <option value="oligodendroglial neoplasm">oligodendroglial neoplasm</option>
          <option value="intestinal cancer">intestinal cancer</option>
          <option value="peripheral nervous system neoplasm">peripheral nervous system neoplasm</option>
          <option value="ocular cancer">ocular cancer</option>
          <option value="gestational trophoblastic neoplasm">gestational trophoblastic neoplasm</option>
          <option value="papillary carcinoma">papillary carcinoma</option>
          <option value="oropharyngeal cancer">oropharyngeal cancer</option>
          <option value="non-hodgkin lymphoma">non-hodgkin lymphoma</option>
          <option value="rectum adenocarcinoma">rectum adenocarcinoma</option>
          <option value="paranasal sinus cancer">paranasal sinus cancer</option>
          <option value="gastric lymphoma">gastric lymphoma</option>
          <option value="adrenal cancer">adrenal cancer</option>
          <option value="extrahepatic bile duct carcinoma">extrahepatic bile duct carcinoma</option>
          <option value="granulosa cell tumor">granulosa cell tumor</option>
          <option value="hypopharynx cancer">hypopharynx cancer</option>
          <option value="acinar cell carcinoma">acinar cell carcinoma</option>
          <option value="angiosarcoma">angiosarcoma</option>
          <option value="supraglottic carcinoma">supraglottic carcinoma</option>
          <option value="carcinoma of supraglottis">carcinoma of supraglottis</option>
          <option value="myelofibrosis">myelofibrosis</option>
          <option value="invasive lobular carcinoma">invasive lobular carcinoma</option>
          <option value="invasive ductal carcinoma">invasive ductal carcinoma</option>
          <option value="cervix carcinoma">cervix carcinoma</option>
          <option value="leiomyosarcoma">leiomyosarcoma</option>
          <option value="choriocarcinoma">choriocarcinoma</option>
          <option value="endocrine gland cancer">endocrine gland cancer</option>
          <option value="thymoma">thymoma</option>
          <option value="fibrous histiocytoma">fibrous histiocytoma</option>
          <option value="spindle cell sarcoma">spindle cell sarcoma</option>
          <option value="eyelid carcinoma">eyelid carcinoma</option>
          <option value="bronchus carcinoma">bronchus carcinoma</option>
          <option value="vascular tumors">vascular tumors</option>
          <option value="testicular tumor">testicular tumor</option>
          <option value="oblastoma multiforme">oblastoma multiforme</option>
          <option value="endometrial stromal sarcoma">endometrial stromal sarcoma</option>
          <option value="malt lymphoma">malt lymphoma</option>
          <option value="thyroid medullary carcinoma">thyroid medullary carcinoma</option>
          <option value="acute monocytic leukemia">acute monocytic leukemia</option>
          <option value="pineoblastoma">pineoblastoma</option>
          <option value="adrenal cortex cancer">adrenal cortex cancer</option>
          <option value="skin carcinoma">skin carcinoma</option>
          <option value="gangliocytoma">gangliocytoma</option>
          <option value="bone marrow cancer">bone marrow cancer</option>
          <option value="gastric diffuse adenocarcinoma">gastric diffuse adenocarcinoma</option>
          <option value="teratocarcinoma">teratocarcinoma</option>
          <option value="parotid cancer">parotid cancer</option>
          <option value="colonic carcinoma">colonic carcinoma</option>
          <option value="tubular adenocarcinoma">tubular adenocarcinoma</option>
          <option value="lung carcinoma">lung carcinoma</option>
          <option value="paraganglioma">paraganglioma</option>
          <option value="ganglioneuroblastoma">ganglioneuroblastoma</option>
          <option value="juvenile myelomonocytic leukemia">juvenile myelomonocytic leukemia</option>
          <option value="stomach carcinoma">stomach carcinoma</option>
          <option value="gastrinoma">gastrinoma</option>
          <option value="cancer of the stomach">cancer of the stomach</option>
          <option value="lymphoplasmacytic lymphoma">lymphoplasmacytic lymphoma</option>
          <option value="plasma cell neoplasm">plasma cell neoplasm</option>
          <option value="malignant mesenchymoma">malignant mesenchymoma</option>
          <option value="burkitt lymphoma">burkitt lymphoma</option>
          <option value="uterine cervical neoplasm">uterine cervical neoplasm</option>
          <option value="perivascular epithelioid cell tumor">perivascular epithelioid cell tumor</option>
          <option value="digestive system cancer">digestive system cancer</option>
          <option value="merkel cell carcinoma">merkel cell carcinoma</option>
          <option value="peripheral t-cell lymphoma">peripheral t-cell lymphoma</option>
          <option value="olfactory neuroblastoma">olfactory neuroblastoma</option>
          <option value="ampulla of vater adenocarcinoma">ampulla of vater adenocarcinoma</option>
          <option value="renal clear cell carcinoma">renal clear cell carcinoma</option>
          <option value="alveolar rhabdomyosarcoma">alveolar rhabdomyosarcoma</option>
          <option value="muscle cancer">muscle cancer</option>
          <option value="anal cancer">anal cancer</option>
          <option value="bile duct cancer">bile duct cancer</option>
          <option value="brain glioma">brain glioma</option>
          <option value="follicular carcinoma">follicular carcinoma</option>
          <option value="cystadenocarcinoma">cystadenocarcinoma</option>
          <option value="myeloid leukemia">myeloid leukemia</option>
          <option value="rhabdoid cancer">rhabdoid cancer</option>
          <option value="chronic monocytic leukemia">chronic monocytic leukemia</option>
          <option value="embryonal rhabdomyosarcoma">embryonal rhabdomyosarcoma</option>
          <option value="large cell carcinoma">large cell carcinoma</option>
          <option value="hepatocellular fibrolamellar carcinoma">hepatocellular fibrolamellar carcinoma</option>
          <option value="brain stem cancer">brain stem cancer</option>
          <option value="papillary adenocarcinoma">papillary adenocarcinoma</option>
          <option value="oligodendroglioma">oligodendroglioma</option>
          <option value="acute lymphocytic leukemia">acute lymphocytic leukemia</option>
          <option value="giant cell tumor">giant cell tumor</option>
          <option value="ampulla of vater carcinoma">ampulla of vater carcinoma</option>
          <option value="cervical adenocarcinoma">cervical adenocarcinoma</option>
          <option value="myxoid liposarcoma">myxoid liposarcoma</option>
          <option value="pleuropulmonary blastoma">pleuropulmonary blastoma</option>
          <option value="mucinous adenocarcinoma">mucinous adenocarcinoma</option>
          <option value="bronchiolo-alveolar adenocarcinoma">bronchiolo-alveolar adenocarcinoma</option>
          <option value="meningioma">meningioma</option>
          <option value="inflammatory myofibroblastic tumor">inflammatory myofibroblastic tumor</option>
          <option value="fibrosarcoma">fibrosarcoma</option>
          <option value="skin squamous cell carcinoma">skin squamous cell carcinoma</option>
          <option value="rectum cancer">rectum cancer</option>
          <option value="malignant peripheral nerve sheath tumor">malignant peripheral nerve sheath tumor</option>
          <option value="clear cell adenocarcinoma">clear cell adenocarcinoma</option>
          <option value="embryonal carcinoma">embryonal carcinoma</option>
          <option value="ampullary carcinoma">ampullary carcinoma</option>
          <option value="neurilemmoma">neurilemmoma</option>
          <option value="rcc">rcc</option>
          <option value="signet ring cell adenocarcinoma">signet ring cell adenocarcinoma</option>
          <option value="spindle cell carcinoma">spindle cell carcinoma</option>
          <option value="follicular thyroid carcinoma">follicular thyroid carcinoma</option>
          <option value="ureter cancer">ureter cancer</option>
          <option value="chronic myeloproliferative disease">chronic myeloproliferative disease</option>
          <option value="pseudomyxoma peritonei">pseudomyxoma peritonei</option>
          <option value="breast carcinoma">breast carcinoma</option>
          <option value="kaposi's sarcoma">kaposi's sarcoma</option>
          <option value="keratoacanthoma">keratoacanthoma</option>
          <option value="peritoneal carcinoma">peritoneal carcinoma</option>
          <option value="hepatoma">hepatoma</option>
          <option value="cervix cancer">cervix cancer</option>
          <option value="anaplastic large cell lymphoma">anaplastic large cell lymphoma</option>
          <option value="vulva carcinoma">vulva carcinoma</option>
          <option value="maxillary sinus squamous cell carcinoma">maxillary sinus squamous cell carcinoma</option>
          <option value="mammary tumor">mammary tumor</option>
          <option value="gist">gist</option>
          <option value="serous carcinoma">serous carcinoma</option>
          <option value="yolk sac neoplasm">yolk sac neoplasm</option>
          <option value="adrenal gland cancer">adrenal gland cancer</option>
          <option value="vulvar carcinoma">vulvar carcinoma</option>
          <option value="intraocular lymphoma">intraocular lymphoma</option>
          <option value="gastric adenocarcinoma">gastric adenocarcinoma</option>
          <option value="thymus cancer">thymus cancer</option>
          <option value="synovial sarcoma">synovial sarcoma</option>
          <option value="neurofibroma">neurofibroma</option>
          <option value="chromophobe adenocarcinoma">chromophobe adenocarcinoma</option>
          <option value="pancreatic endocrine carcinoma">pancreatic endocrine carcinoma</option>
          <option value="uterine cancer">uterine cancer</option>
          <option value="germ cell cancer">germ cell cancer</option>
          <option value="embryonal cancer">embryonal cancer</option>
          <option value="conjunctival tumor">conjunctival tumor</option>
          <option value="sezary's disease">sezary's disease</option>
          <option value="esophagus cancer">esophagus cancer</option>
          <option value="endometrioid carcinoma">endometrioid carcinoma</option>
          <option value="vulva squamous cell carcinoma">vulva squamous cell carcinoma</option>
          <option value="prolymphocytic leukemia">prolymphocytic leukemia</option>
          <option value="appendix cancer">appendix cancer</option>
          <option value="splenic neoplasm">splenic neoplasm</option>
          <option value="ovarian carcinoma">ovarian carcinoma</option>
          <option value="extraskeletal myxoid chondrosarcoma">extraskeletal myxoid chondrosarcoma</option>
          <option value="plasmacytic leukemia">plasmacytic leukemia</option>
          <option value="epithelioid sarcoma">epithelioid sarcoma</option>
          <option value="brain stem glioma">brain stem glioma</option>
          <option value="retroperitoneal cancer">retroperitoneal cancer</option>
          <option value="sclc">sclc</option>
          <option value="choroid plexus carcinoma">choroid plexus carcinoma</option>
          <option value="lung giant cell carcinoma">lung giant cell carcinoma</option>
          <option value="male breast cancer">male breast cancer</option>
          <option value="vulval cancer">vulval cancer</option>
          <option value="grade iii astrocytoma">grade iii astrocytoma</option>
          <option value="marginal zone b-cell lymphoma">marginal zone b-cell lymphoma</option>
          <option value="hairy cell leukemia">hairy cell leukemia</option>
          <option value="neuroectodermal tumor">neuroectodermal tumor</option>
          <option value="gastric cancer">gastric cancer</option>
          <option value="gastrointestinal carcinoma">gastrointestinal carcinoma</option>
          <option value="islet cell tumor">islet cell tumor</option>
          <option value="dysgerminoma">dysgerminoma</option>
          <option value="neural tumor">neural tumor</option>
          <option value="giant cell reparative granuloma">giant cell reparative granuloma</option>
          <option value="mixed cell type cancer">mixed cell type cancer</option>
          <option value="testis cancer">testis cancer</option>
          <option value="teratoma">teratoma</option>
          <option value="endodermal sinus tumor">endodermal sinus tumor</option>
          <option value="mesoblastic nephroma">mesoblastic nephroma</option>
          <option value="malignant teratoma">malignant teratoma</option>
          <option value="cloacogenic carcinoma">cloacogenic carcinoma</option>
        </select>
      </div>
      <div class="form-group col-xs-4 litdimex_filter_class">
        <label for="litmine_dimex_ontology_filter">Disease Ontology</label>
        <select class="form-control" id="litmine_dimex_ontology_filter">
          <option value="" selected="">All</option>
          <option value="breast cancer">breast cancer</option>
          <option value="colorectal cancer">colorectal cancer</option>
          <option value="prostate cancer">prostate cancer</option>
          <option value="malignant glioma">malignant glioma</option>
          <option value="hematologic cancer">hematologic cancer</option>
          <option value="lung cancer">lung cancer</option>
          <option value="thyroid cancer">thyroid cancer</option>
          <option value="melanoma">melanoma</option>
          <option value="testicular cancer">testicular cancer</option>
          <option value="germ cell cancer">germ cell cancer</option>
          <option value=""></option>
          <option value="bone cancer">bone cancer</option>
          <option value="pharynx cancer, oral cavity cancer">pharynx cancer, oral cavity cancer</option>
          <option value="pharynx cancer">pharynx cancer</option>
          <option value="uterine cancer">uterine cancer</option>
          <option value="liver cancer">liver cancer</option>
          <option value="kidney cancer">kidney cancer</option>
          <option value="pancreatic cancer">pancreatic cancer</option>
          <option value="ovarian cancer">ovarian cancer</option>
          <option value="esophageal cancer">esophageal cancer</option>
          <option value="peripheral nervous system neoplasm">peripheral nervous system neoplasm</option>
          <option value="vascular cancer">vascular cancer</option>
          <option value="stomach cancer">stomach cancer</option>
          <option value="urinary bladder cancer">urinary bladder cancer</option>
          <option value="connective tissue cancer">connective tissue cancer</option>
          <option value="Kaposi's sarcoma">Kaposi's sarcoma</option>
          <option value="cervical cancer">cervical cancer</option>
          <option value="malignant glioma, brain cancer">malignant glioma, brain cancer</option>
          <option value="gastrointestinal stromal tumor">gastrointestinal stromal tumor</option>
          <option value="adrenal gland cancer">adrenal gland cancer</option>
          <option value="skin cancer">skin cancer</option>
          <option value="muscle cancer">muscle cancer</option>
          <option value="brain cancer">brain cancer</option>
          <option value="head and neck cancer">head and neck cancer</option>
          <option value="bile duct cancer">bile duct cancer</option>
          <option value="parathyroid carcinoma">parathyroid carcinoma</option>
          <option value="hematologic cancer, lymphatic system cancer">hematologic cancer, lymphatic system cancer</option>
          <option value="ocular cancer">ocular cancer</option>
          <option value="neuroectodermal neoplasm">neuroectodermal neoplasm</option>
          <option value="thymus cancer">thymus cancer</option>
          <option value="synovium cancer">synovium cancer</option>
          <option value="appendix cancer">appendix cancer</option>
          <option value="brain cancer, malignant glioma">brain cancer, malignant glioma</option>
          <option value="meningioma, brain cancer, bone cancer">meningioma, brain cancer, bone cancer</option>
          <option value="retroperitoneal cancer">retroperitoneal cancer</option>
          <option value="malignant mesothelioma">malignant mesothelioma</option>
          <option value="oral cavity cancer">oral cavity cancer</option>
          <option value="pituitary cancer">pituitary cancer</option>
          <option value="meningioma">meningioma</option>
          <option value="vulva cancer">vulva cancer</option>
          <option value="gallbladder cancer">gallbladder cancer</option>
          <option value="pleural cancer">pleural cancer</option>
          <option value="fibrosarcoma">fibrosarcoma</option>
          <option value="testicular cancer, germ cell cancer">testicular cancer, germ cell cancer</option>
          <option value="larynx cancer">larynx cancer</option>
          <option value="urinary system cancer">urinary system cancer</option>
          <option value="neuroendocrine tumor">neuroendocrine tumor</option>
          <option value="neuroectodermal neoplasm, brain cancer, brain cancer">neuroectodermal neoplasm, brain cancer, brain cancer</option>
          <option value="heart cancer">heart cancer</option>
          <option value="ureter cancer">ureter cancer</option>
          <option value="brain stem cancer">brain stem cancer</option>
          <option value="mediastinal cancer">mediastinal cancer</option>
          <option value="fallopian tube cancer">fallopian tube cancer</option>
          <option value="chondrosarcoma">chondrosarcoma</option>
          <option value="placenta cancer">placenta cancer</option>
          <option value="lipomatous cancer">lipomatous cancer</option>
          <option value="giant cell tumor">giant cell tumor</option>
          <option value="peritoneum cancer">peritoneum cancer</option>
        </select>
      </div>
      <div class="form-group col-xs-4 litdimex_filter_class lungdexter_filter_class">
        <label for="litmine_disease_mention_filter">Disease Mention</label>
        <input type="text" class="form-control" placeholder="Search for a gene name" id="litmine_disease_mention_filter">
      </div>
      <div class="form-group col-xs-4 litdimex_filter_class">
        <label for="litmine_mutation_mention_filter">Mutation Mention</label>
        <input type="text" class="form-control" placeholder="Search for a gene name" id="litmine_mutation_mention_filter">
      </div>
      <div class="form-group col-xs-4 lungdexter_filter_class">
        <label for="litmine_expression_change_filter">Expression change</label>
        <select class="form-control" id="litmine_expression_change_filter">
          <option value="" selected="">All</option>
          <option value="UP">UP</option>
          <option value="DOWN">DOWN</option>
        </select>
      </div>
      <div class="form-group col-xs-4 litdimex_filter_class">
        <label for="litmine_mutation_type_filter">Mutation Type</label>
        <select class="form-control" id="litmine_mutation_type_filter">
          <option value="" selected="">All</option>
          <option value="Amino acid">Amino acid</option>
          <option value="Nucleotide">Nucleotide</option>
          <option value="RS ID">RS ID</option>
        </select>
      </div>
    </div>
  </div>
</form>

<form class="form-horizontal" role="form" id="filter_biomarker_form">
  <div class="panel panel-success" style="width:100%;">
    <div class="panel-heading" style="width:100%">Biomarker Filters<span class="pull-right clickable"><i class="glyphicon glyphicon-chevron-down"></i></span></div>
    <div class="panel-body" style="padding:4px; width:100%;">
      <div class="form-group col-xs-3">
        <label for="biomarker_dataset_filter">Dataset</label><br>
        <!--<select class="form-control" id="biomarker_dataset_filter">
                    <option value="EDRN" selected>EDRN</option>
                    <option value="FDA">FDA</option>
                </select>-->
        <a class="btn btn-primary" id="biomarker_dataset_filter">Switch to FDA Biomarkers</a>
      </div>
      <div class="form-group col-xs-2">
        <label for="biomarker_type_filter">Organ</label>
        <select class="form-control" id="biomarker_type_filter">
          <option value="" selected="">All</option>
          <option value="Colon">Colon</option>
          <option value="Lung">Lung</option>
          <option value="Ovary">Ovary</option>
          <option value="Breast">Breast</option>
          <option value="Prostate">Prostate</option>
          <option value="Pancreas">Pancreas</option>
          <option value="Liver">Liver</option>
          <option value="Bladder">Bladder</option>
          <option value="Head and Neck">Head and Neck</option>
          <option value="Esophagus">Esophagus</option>
        </select>
      </div>
      <!--<div class="form-group col-xs-2">
                <label for="biomarker_phase_filter">Phase</label>
                <select class="form-control" id="biomarker_phase_filter">
                    <option value="" selected>All</option>
                </select>
              </div>-->
      <div class="form-group col-xs-2">
        <label for="biomarker_regulatory_filter">QA Status</label>
        <select class="form-control" id="biomarker_regulatory_filter">
          <option value="" selected="">All</option>
          <option value="Under Review">Under Review</option>
          <option value="Curated">Curated</option>
          <option value="Accepted">Accepted</option>
        </select>
      </div>
      <div class="form-group col-xs-2">
        <label for="biomarker_panel_filter">Panel</label>
        <select class="form-control" id="biomarker_panel_filter">
          <option value="" selected="">All</option>
          <option value="0">0</option>
          <option value="1">1</option>
        </select>
      </div>
    </div>
  </div>
</form>

<form class="form-horizontal" role="form" id="filter_fdabiomarker_form">
  <div class="panel panel-success" style="width:100%;">
    <div class="panel-heading" style="width:100%">FDA Biomarker Filters<span class="pull-right clickable"><i class="glyphicon glyphicon-chevron-down"></i></span></div>
    <div class="panel-body" style="padding:4px; width:100%;">
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_dataset_filter">Dataset</label><br>
        <!--<select class="form-control" id="fdabiomarker_dataset_filter">
                    <option value="EDRN" selected>EDRN</option>
                    <option value="FDA">FDA</option>
                </select>-->
        <a class="btn btn-primary" id="fdabiomarker_dataset_filter">Switch to EDRN Biomarkers</a>
      </div>
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_type_filter">Cancer</label>
        <select class="form-control" id="fdabiomarker_type_filter">
          <option value="" selected="">All</option>
          <option value="breast cancer">breast cancer</option>
          <option value="lung non-small cell carcinoma">lung non-small cell carcinoma</option>
          <option value="ovarian cancer">ovarian cancer</option>
          <option value="colorectal cancer">colorectal cancer</option>
          <option value="melanoma">melanoma</option>
          <option value="prostate cancer">prostate cancer</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_phase_filter">Phase</label>
        <select class="form-control" id="fdabiomarker_phase_filter">
          <option value="" selected="">All</option>
          <option value="NULL">NULL</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_regulatory_filter">Regulatory Approval Status</label>
        <select class="form-control" id="fdabiomarker_regulatory_filter">
          <option value="" selected="">All</option>
          <option value="class II">class II</option>
          <option value="Class II_ 510(k)">Class II_ 510(k)</option>
          <option value="PMA">PMA</option>
          <option value="PMA withdrawn">PMA withdrawn</option>
          <option value="PMA_ 510(k)">PMA_ 510(k)</option>
          <option value="PMP">PMP</option>
          <option value="513(f)(2)">513(f)(2)</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_drug_filter">Drug</label>
        <select class="form-control" id="fdabiomarker_drug_filter">
          <option value="" selected="">All</option>
          <option value="Olaparib">Olaparib</option>
          <option value=""></option>
          <option value="3062316_ 644241_ 5484725_ 208908_ 50067185 (SID)_ 178103510 (SID)">3062316_ 644241_ 5484725_ 208908_ 50067185 (SID)_ 178103510 (SID)</option>
          <option value="NA">NA</option>
          <option value="31703_ 4212_ 454216_ 148673_ 6918223_ 452548_ 36462_ 30323_ 10607">31703_ 4212_ 454216_ 148673_ 6918223_ 452548_ 36462_ 30323_ 10607</option>
          <option value="56649450">56649450</option>
          <option value="Xalkori (crizotinib)">Xalkori (crizotinib)</option>
          <option value="Tarceva (erlotinib)">Tarceva (erlotinib)</option>
          <option value="GILOTRIFTM (afatinib)">GILOTRIFTM (afatinib)</option>
          <option value="TARCEVA (erlotinib)_ TAGRISSOTM (osimertinib)">TARCEVA (erlotinib)_ TAGRISSOTM (osimertinib)</option>
          <option value="-">-</option>
          <option value="TAFINLAR(dabrafenib) in combination with MEKINIST (trametinib)">TAFINLAR(dabrafenib) in combination with MEKINIST (trametinib)</option>
          <option value="IRESSA (gefitinib)">IRESSA (gefitinib)</option>
          <option value="LynparzaTM (olaparib)">LynparzaTM (olaparib)</option>
          <option value="RubracaTM (rucaparib)">RubracaTM (rucaparib)</option>
          <option value="Erbitux (cetuximab)">Erbitux (cetuximab)</option>
          <option value="Erbitux (cetuximab)_ Vectibix (panitumumab)">Erbitux (cetuximab)_ Vectibix (panitumumab)</option>
          <option value="Vectibix (panitumumab)">Vectibix (panitumumab)</option>
          <option value="Vemurafenib">Vemurafenib</option>
          <option value="Dabrafenib [Tafinlar] and Trametinib [MekinistTM]">Dabrafenib [Tafinlar] and Trametinib [MekinistTM]</option>
          <option value="PROGENSA PCA3 Assay">PROGENSA PCA3 Assay</option>
        </select>
      </div>
      <div class="form-group col-xs-4">
        <label for="fdabiomarker_panel_filter">Panel</label>
        <select class="form-control" id="fdabiomarker_panel_filter">
          <option value="" selected="">All</option>
          <option value="Y">Y</option>
          <option value="N">N</option>
        </select>
      </div>
    </div>
  </div>
</form>

Text Content





EXPLORE CANCER BIOMARKER AND RELATED DATA




Try: EGFR P00533
(you need to use HGNC or UniProtKB primary gene name/symbol or
UniProtKB/Swiss-Prot accession)

COVID-19 Biomarkers OncoMX Biomarkers EDRN/FDA Biomarkers Differential
Expression Pathways
Disease Mutation Healthy expression Expression Literature Mining Mutation
Literature Mining Browse Datasets


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View OncoMX data across all data sources. This includes data from EDRN, Bgee,
BioXpress, Reactome, and BioMuta.

Perspectives
Biomarkers Evolutionary Context Literature Mining Biomarkers within Pathways


Data Sources
Bgee BioMuta BioXpress DEXTER DiMeX EDRN Reactome
zoom outOncoMX
Statistics at a Glance
Cancer Terms Bgee Stats Biomarker Stats BioMuta Stats BioXpress Stats Proteins
Reactome Stats


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 * OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of
   Related Cancer and Healthy Data




STATISTICS AT A GLANCE



VIEW BIOXPRESS STATISTICS

UniProtKB accessions hitUniProt differentially expressed accessionsmiRNA
identifiers Differentially expressed miRNA hitsDO mapped terms05k10k15k20k

BioXpress General Statistics

VIEW BIOMUTA STATISTICS

TotalPassed initial QC filterPassed VCF filterPassed VCF & mapped to
DOID0200400600800TotalPassed initial QC filterPassed VCF filterPassed VCF &
mapped to DOID050k100k150k200kTotalPassed initial QC filterPassed VCF
filterPassed VCF & mapped to DOID05M10M15M20MTotalPassed initial QC filterPassed
VCF filterPassed VCF & mapped to DOID020M40M60MTotalPassed initial QC
filterPassed VCF filterPassed VCF & mapped to DOID0200M400M600M800M

CIViCClinVarCOSMICICGCTCGA

VIEW EDRN BIOMARKER STATISTICS

VIEW BGEE STATISTICS

# genes present# genes absent# genes with data# conditions with present#
conditions with absent# conditions with data020k40k60k

miRNAprotein codingall available biotypes

VIEW REACTOME STATISTICS

VIEW DISTRIBUTION OF PROTEINS ACROSS RESOURCES

OncoMXBioXpressBgeeEDRN05k10k15k

Tumor SamplesNormal Tissue Samples

VIEW DISTRIBUTION OF UNIQUE CANCER TERMS ACROSS RESOURCES

OncoMXBioMutaBioXpressEDRN010203040

Statistics at a Glance
Cancer Terms Biomarker Stats Bgee Stats BioMuta Stats BioXpress Stats Proteins
Reactome Stats
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SUMMARY STATISTICS



View OncoMX data across all data sources. This includes data from EDRN, Bgee,
BioXpress, Reactome, and BioMuta.

Normal Expression Filters
Gene Symbol
Expression Call All presentabsent
Call Quality All silver qualitygold qualitybronze quality
Uberon anatomical entity name All male germ cellspermoocyteepithelial cell of
pancreasendothelial celltype B pancreatic cellsecondary
oocyteleukocytemononuclear cellbone marrow cellbronchial epithelial cellbuccal
mucosa celluterine cervixislet of Langerhanspituitary glandzone of skinlymph
nodetendondorsal root ganglionurethralarge intestinerenal
glomerulusmetanephrosadult mammalian kidneyintestineoral cavityamniotic
fluidbloodcolonic mucosapharyngeal mucosarenal medullajejunal mucosaprefrontal
cortexendocervixanatomical systemmulti-cellular organismtestisfemale
reproductive systemembryostomachaortaheartbraincerebral
cortexretinapleuratibiapenisfemale gonaduterusvaginamammalian vulvaseminal
vesicleadipose tissuecentral nervous systemesophagussaliva-secreting
glanddiaphragmright lobe of liverright lobe of thyroid glandleft lobe of thyroid
glandskeletal muscle tissuesmooth muscle tissuebody of pancreascaecumvermiform
appendixcolontransverse colonsigmoid colonfundus of stomachbody of stomachcardia
of stomachpylorusmucosa of stomachcortex of kidneynephron tubuleright adrenal
glandleft adrenal glandadrenal cortexurinary bladdermucosa of urinary
bladderpancreasendometriummyometriumright uterine tubeleft uterine tubegerminal
epithelium of ovarytibial nervequadriceps femorisvastus lateralismuscle of
leggastrocnemiusskin of abdomendeltoidascending aortabiceps brachiitriceps
brachiiskin of legthoracic aortasuperficial temporal arterycoronary arteryright
coronary arteryleft coronary arterymuscle organtrigeminal
gangliontonguenasopharynxmammary ductirispigmented layer of retinapalpebral
conjunctivanasal cavity mucosagingivaminor salivary glandparotid glandfrontal
cortextemporal lobeparietal lobecaudate nucleusputamenglobus
pallidusamygdalanucleus accumbensforebrainmidbraintelencephalonmedulla
oblongatadorsal plus ventral thalamushypothalamussubthalamic nucleusmammary
glandgingival epitheliumneocortexepithelium of nasopharynxAmmon's hornsubstantia
nigra pars compactasubstantia nigra pars reticulataepithelium of
esophagusplacentagluteal muscleoccipital lobenippleepithelium of
bronchuscerebellumsubstantia nigrathyroid glandlunghair follicleheart right
ventriclecardiac atriumcardiac ventricleheart left ventricleapex of
heartspleenliversmall intestinekidneyduodenumjejunumright ovaryleft
ovaryinferior olivary complexright lungbronchussubcutaneous adipose
tissueadenohypophysissynovial jointspinal cordcerebellar hemispherepopliteal
arteryolfactory bulbcorpus callosumdescending thoracic
aortamyocardiumperitoneumprostate glandadrenal glandthymusbone
marrowtonsilconnective tissuemuscle tissueparietal pleuravisceral
pleurapericardiumcartilage tissueprimary visual cortexdeciduaesophagus
mucosalateral globus pallidusmedial globus pallidustrabecular bone
tissuepostcentral gyrussuperior frontal gyrusventral tegmental areamiddle
frontal gyrusentorhinal cortexmiddle temporal gyrusfrontal poleright frontal
lobedorsal motor nucleus of vagus nervecingulate cortextracheaepithelium of
mammary glandcardiac muscle of right atriumsmall intestine Peyer's patchmouth
mucosaCA1 field of hippocampusfallopian tubechoroid plexus
epitheliumorbitofrontal cortexupper arm skincaput epididymiscorpus
epididymiscauda epididymisskeletal muscle tissue of biceps brachiiskeletal
muscle tissue of rectus abdominisleft testisright testiscerebellar
vermismetanephric glomerulusblood vessel layercervix epitheliumoviduct
epitheliumkidney epitheliummucosa of transverse colonmucosa of sigmoid
colonmucosa of paranasal sinusthoracic mammary glandparaflocculusinferior vagus
X ganglionnasal cavity epitheliumC1 segment of cervical spinal cordBrodmann
(1909) area 46right atrium auricular regionsquamous epitheliumtongue squamous
epitheliumesophagus squamous epitheliumcervix squamous epitheliumadult
organismchorionic villussuperior vestibular nucleussaphenous veinsuperior
surface of tonguetibial arterylayer of synovial tissueadipose tissue of
abdominal regiontendon of biceps brachiiperiodontal ligamentupper lobe of
lunglower lobe of lungupper lobe of left lungdorsolateral prefrontal
cortexanterior cingulate cortexbody of uterusomental fat padbody of
tongueectocervixlower esophagusBrodmann (1909) area 9Brodmann (1909) area
10Brodmann (1909) area 23right hemisphere of cerebellumskeletal muscle
organadrenal tissuemuscle layer of sigmoid colonleft adrenal gland cortexright
adrenal gland cortexlower esophagus muscularis layerlower esophagus
mucosaesophagogastric junction muscularis propriaponsnervelateral nuclear group
of thalamusvena cavaleft ventricle myocardiumendometrium epitheliumbone
elementeyearteryfrontal lobeperipheral nervous systemsynovial membrane of
synovial jointupper leg skinskin of hipepididymisoptic choroidlens of
camera-type eyeveincerebellar cortexgall bladderileumbreastlacrimal glandneuron
projection bundle connecting eye with brainpineal bodysympathetic
trunklarynxcochleahypopharynxumbilical cordgreater omentumeye trabecular
meshworkskin epidermisrectumcraniocervical regioncorpus striatumpharyngeal arch
1presumptive hindbrainearproximal convoluted tubule
Uberon developmental stage name All human middle aged stage (human)human early
adulthood stage (human)human adult stage (human)life cycleyoung adult stage
(human)25-44 year-old human stage (human)65-79 year-old human stage (human)human
late adulthood stage (human)80 year-old and over human stage (human)adolescent
stage (human)post-juvenile adult stagethird LMP month human stage (human)fourth
LMP month human stage (human)fifth LMP month human stage (human)organogenesis
stagelate embryonic stage2-5 year-old child stage (human)6-12 year-old child
stage (human)juvenile stageinfant stageCS09Carnegie stage 10 (human)CS11Carnegie
stage 12 (human)CS13Carnegie stage 14 (human)sixth LMP month human stage
(human)human aged stage38th week post-fertilization and over human stage
(human)ninth LMP month human stage (human)embryo stageCarnegie stage 16
(human)CS17
Mutation Filters
Cancer Type All DOID:11054 / Urinary bladder cancer [UBC]DOID:5041 / Esophageal
cancer [EC]DOID:1324 / Lung cancer [Lunca] & DOID:3907 / Lung squamous cell
carcinomaDOID:1781 / Thyroid cancer [Thyca]DOID:263 / Kidney cancer [Kidca] &
DOID:4465 / Papillary renal cell carcinomaDOID:3571 / Liver cancer
[Livca]DOID:263 / Kidney cancer [Kidca] & Kidney renal clear cell
carcinomaDOID:10534 / Stomach cancer [Stoca]DOID:219 / Colon cancer [Colca] &
DOID:234 / Colon adenocarcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3910 /
Lung adenocarcinomaDOID:11934 / Head and neck cancer [H&NC]DOID:263 / Kidney
cancer [Kidca] & DOID:4471 / Chromophobe adenocarcinomaDOID:1612 / Breast cancer
[BRCA]DOID:10283 / Prostate cancer [PCa]DOID:9256 / Colorectal cancer [Corca] &
DOID:0050861 / Colorectal adenocarcinomaDOID:8618 / Oral cavity cancer [OCC] &
DOID:0050866 / Oral squamous cell carcinomaDOID:2531 / Hematologic cancer
[Hemca] & DOID:0060058 / LymphomaDOID:1612 / Breast cancer [BRCA] & DOID:0060075
/ Estrogen-receptor positive breast cancerDOID:2531 / Hematologic cancer [Hemca]
& DOID:1040 / Chronic lymphocytic leukemiaDOID:5041 / Esophageal cancer [EC] &
DOID:1107 / Esophageal carcinomaDOID:2531 / Hematologic cancer [Hemca] &
DOID:1240 / LeukemiaDOID:1324 / Lung cancer [Lunca]DOID:363 / Uterine cancer
[Uteca] & DOID:1380 / Endometrial cancerDOID:1793 / Pancreatic cancer
[PACA]DOID:1909 / Melanoma [Melan]DOID:2394 / Ovarian cancer [OVCA] & DOID:2152
/ Epithelial ovarian cancerDOID:219 / Colon cancer [Colca]DOID:2394 / Ovarian
cancer [OVCA]DOID:10283 / Prostate cancer [PCa] & DOID:2526 / Prostate
adenocarcinomaDOID:2596 / Larynx cancer [Larca]DOID:2596 / Larynx cancer [Larca]
& DOID:2600 / Laryngeal carcinomaDOID:4362 / Cervical cancer [Cerca] & DOID:2893
/ Cervix carcinomaDOID:3070 / Malignant glioma [MG] & DOID:3069 /
AstrocytomaDOID:3119 / Gastrointestinal system cancer [Gasca]DOID:4159 / Skin
cancer [Skica] & DOID:3151 / Skin squamous cell carcinomaDOID:1612 / Breast
cancer [BRCA] & DOID:3459 / Breast carcinomaDOID:263 / Kidney cancer [Kidca] &
DOID:3672 / Rhabdoid cancerDOID:10534 / Stomach cancer [Stoca] & DOID:3717 /
Stomach adenocarcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3905 / Lung
carcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3908 / Non-small cell lung
carcinoma [NSCLC]DOID:1781 / Thyroid cancer [Thyca] & DOID:3963 / Thyroid
carcinomaDOID:11054 / Urinary bladder cancer [UBC] & DOID:4007 / Bladder
carcinomaDOID:1793 / Pancreatic cancer [PACA] & DOID:4074 / Pancreas
adenocarcinomaDOID:4362 / Cervical cancer [Cerca]DOID:263 / Kidney cancer
[Kidca] & DOID:4450 / Renal cell carcinomaDOID:263 / Kidney cancer [Kidca] &
DOID:4467 / Renal clear cell carcinomaDOID:1324 / Lung cancer [Lunca] &
DOID:5409 / Lung small cell carcinomaDOID:3571 / Liver cancer [Livca] & DOID:684
/ Hepatocellular carcinomaDOID:11054 / Urinary bladder cancer [UBC] & DOID:7244
/ Bladder urachal urothelial carcinomaDOID:2531 / Hematologic cancer [Hemca] &
DOID:8552 / Chronic myeloid leukemiaDOID:2531 / Hematologic cancer [Hemca] &
DOID:9119 / Acute myeloid leukemiaDOID:9256 / Colorectal cancer [CRC]
PolyPhen All possibly damagingprobably damagingbenign-
Mutation Function All -Gain|PhosphorylationLoss|Binding
SiteGain|GlycosylationLoss|UbiquitylationLoss|PhosphorylationLoss|N-linked
GlycosylationLoss|MethylationLoss|+2 from N-linked GlycosylationLoss|+1 from
N-linked GlycosylationLoss|Active
SiteLoss|S-NitrosylationLoss|AcetylationLoss|HydroxylationLoss|O-linked
GlycosylationLoss|CrotonylationLoss|Other Modified
ResidueLoss|SumoylationLoss|C-linked GlycosylationLoss|Gamma-carboxyglutamic
acidLoss|MyristationLoss|PalmitoylationLoss|AmidationLoss|SulfationLoss|PrenylationLoss|Binding
Site|RefSeq CDD|Substrate binding siteLoss|Binding Site|RefSeq CDD|ATP binding
siteLoss|Binding Site|RefSeq CDD|GEF interaction siteLoss|Binding Site|RefSeq
CDD|zinc binding siteLoss|Binding Site|RefSeq CDD|DNA binding siteLoss|Binding
Site|RefSeq CDD|Ca2+ binding siteLoss|Binding Site|RefSeq CDD|DNA-binding
siteLoss|Binding Site|RefSeq CDD|ligand binding siteLoss|Binding Site|RefSeq
CDD|antiparallel homodimerization interfaceLoss|Binding Site|RefSeq CDD|parallel
homodimerization interfaceLoss|Binding Site|RefSeq CDD|cross-brace
motifLoss|Binding Site|RefSeq CDD|dimer interfaceLoss|Binding Site|RefSeq
CDD|ephrin binding siteLoss|Binding Site|RefSeq CDD|GoLoco binding
siteLoss|Binding Site|RefSeq CDD|peptide ligand binding siteLoss|Binding
Site|RefSeq CDD|trimer interfaceLoss|Binding Site|RefSeq CDD|sugar binding
siteLoss|Binding Site|RefSeq CDD|Interdomain contactsLoss|Binding Site|RefSeq
CDD|metal binding site
Literature Mining Filters
Gene Symbol
Gene Mention
Disease Ontology All breast cancerlarge intestine cancerlung cancertongue
squamous cell carcinomamelanomaacute myeloid leukemiaurinary bladder
canceradenocarcinomathyroid carcinomahepatocellular carcinomastomach
cancerpapillary thyroid carcinomab- and t-cell mixed leukemiacolon cancerskin
cancersquamous cell carcinomapancreatic ductal carcinomaosteosarcomanon-small
cell lung carcinomaacute promyelocytic leukemiasalivary gland adenoid cystic
carcinomacolorectal cancerkidney cancerrenal cell carcinomacervical
cancerprostate cancercancerintrahepatic cholangiocarcinomamalignant
gliomaendometrial cancerovarian cancerhead and neck squamous cell
carcinomagastrointestinal system canceroral squamous cell carcinomamultiple
myelomab-cell lymphomacarcinomanasopharynx carcinomauveal melanomaendometrial
carcinomaesophagus squamous cell carcinomansclcserous
cystadenocarcinomacholangiocarcinomaadult t-cell leukemiaglioblastoma
multiformelung small cell carcinomahccliver cancerthyroid cancerpancreatic
cancerchondrosarcomachronic lymphocytic leukemiareticulosarcomaesophageal
cancerbreast ductal carcinomamantle cell lymphomalymphoid leukemiahead and neck
cancernephroblastomaendometrial adenocarcinomalung
adenocarcinomamedulloblastomaprimary cancerhypopharyngeal
cancerastrocytomaleukemiagbmmonoclonal gammopathy of uncertain significancelung
oat cell carcinomachronic myeloid leukemialymphomahodgkin's lymphomabasal cell
carcinomahepatoblastomaretinoblastomatransitional cell carcinomalaryngeal
squamous cell carcinomamyelodysplastic syndromeoral cavity
cancergastrointestinal stromal tumorbiliary tract cancerhodgkin's lymphoma,
lymphocytic-histiocytic predominancegallbladder cancermammary cancermalignant
mesotheliomaneuroblastomacolon adenocarcinomatesticular cancertongue
canceresophagus adenocarcinomaadrenocortical carcinomarectal cancermalignant
neoplasmcolon carcinomasquamous carcinomapancreatic carcinomamycosis
fungoidescervical squamous cell carcinomanasopharynx cancerseminomat-cell
leukemiaheart cancerbrain cancerlaryngeal carcinomahemorrhagic
thrombocythemiasystemic mastocytosisbone giant cell tumorthymic
carcinomachordomaparathyroid carcinomaliposarcomacolorectal
adenocarcinomamyeloproliferative neoplasmlarynx cancerhematologic
cancerpituitary cancersalivary gland cancermalignant
fibroxanthomaretroperitoneal leiomyosarcomalymphoblastic leukemiamucoepidermoid
carcinomabone cancernasopharyngeal carcinomatrophoblastic neoplasmskin benign
neoplasmlung squamous cell carcinomarhabdomyosarcomafamilial
retinoblastomadermatofibrosarcoma protuberanssarcomaovarian serous
cystadenocarcinomaewing sarcomacarcinosarcomaneuroendocrine carcinomatesticular
germ cell cancerpenile cancermfspinal meningiomaneuroendocrine tumorastrocytic
tumoroligodendroglial neoplasmintestinal cancerperipheral nervous system
neoplasmocular cancergestational trophoblastic neoplasmpapillary
carcinomaoropharyngeal cancernon-hodgkin lymphomarectum adenocarcinomaparanasal
sinus cancergastric lymphomaadrenal cancerextrahepatic bile duct
carcinomagranulosa cell tumorhypopharynx canceracinar cell
carcinomaangiosarcomasupraglottic carcinomacarcinoma of
supraglottismyelofibrosisinvasive lobular carcinomainvasive ductal
carcinomacervix carcinomaleiomyosarcomachoriocarcinomaendocrine gland
cancerthymomafibrous histiocytomaspindle cell sarcomaeyelid carcinomabronchus
carcinomavascular tumorstesticular tumoroblastoma multiformeendometrial stromal
sarcomamalt lymphomathyroid medullary carcinomaacute monocytic
leukemiapineoblastomaadrenal cortex cancerskin carcinomagangliocytomabone marrow
cancergastric diffuse adenocarcinomateratocarcinomaparotid cancercolonic
carcinomatubular adenocarcinomalung
carcinomaparagangliomaganglioneuroblastomajuvenile myelomonocytic
leukemiastomach carcinomagastrinomacancer of the stomachlymphoplasmacytic
lymphomaplasma cell neoplasmmalignant mesenchymomaburkitt lymphomauterine
cervical neoplasmperivascular epithelioid cell tumordigestive system
cancermerkel cell carcinomaperipheral t-cell lymphomaolfactory
neuroblastomaampulla of vater adenocarcinomarenal clear cell carcinomaalveolar
rhabdomyosarcomamuscle canceranal cancerbile duct cancerbrain gliomafollicular
carcinomacystadenocarcinomamyeloid leukemiarhabdoid cancerchronic monocytic
leukemiaembryonal rhabdomyosarcomalarge cell carcinomahepatocellular
fibrolamellar carcinomabrain stem cancerpapillary
adenocarcinomaoligodendrogliomaacute lymphocytic leukemiagiant cell tumorampulla
of vater carcinomacervical adenocarcinomamyxoid liposarcomapleuropulmonary
blastomamucinous adenocarcinomabronchiolo-alveolar
adenocarcinomameningiomainflammatory myofibroblastic tumorfibrosarcomaskin
squamous cell carcinomarectum cancermalignant peripheral nerve sheath tumorclear
cell adenocarcinomaembryonal carcinomaampullary carcinomaneurilemmomarccsignet
ring cell adenocarcinomaspindle cell carcinomafollicular thyroid carcinomaureter
cancerchronic myeloproliferative diseasepseudomyxoma peritoneibreast
carcinomakaposi's sarcomakeratoacanthomaperitoneal carcinomahepatomacervix
canceranaplastic large cell lymphomavulva carcinomamaxillary sinus squamous cell
carcinomamammary tumorgistserous carcinomayolk sac neoplasmadrenal gland
cancervulvar carcinomaintraocular lymphomagastric adenocarcinomathymus
cancersynovial sarcomaneurofibromachromophobe adenocarcinomapancreatic endocrine
carcinomauterine cancergerm cell cancerembryonal cancerconjunctival
tumorsezary's diseaseesophagus cancerendometrioid carcinomavulva squamous cell
carcinomaprolymphocytic leukemiaappendix cancersplenic neoplasmovarian
carcinomaextraskeletal myxoid chondrosarcomaplasmacytic leukemiaepithelioid
sarcomabrain stem gliomaretroperitoneal cancersclcchoroid plexus carcinomalung
giant cell carcinomamale breast cancervulval cancergrade iii astrocytomamarginal
zone b-cell lymphomahairy cell leukemianeuroectodermal tumorgastric
cancergastrointestinal carcinomaislet cell tumordysgerminomaneural tumorgiant
cell reparative granulomamixed cell type cancertestis cancerteratomaendodermal
sinus tumormesoblastic nephromamalignant teratomacloacogenic carcinoma
Disease Ontology All breast cancercolorectal cancerprostate cancermalignant
gliomahematologic cancerlung cancerthyroid cancermelanomatesticular cancergerm
cell cancerbone cancerpharynx cancer, oral cavity cancerpharynx canceruterine
cancerliver cancerkidney cancerpancreatic cancerovarian canceresophageal
cancerperipheral nervous system neoplasmvascular cancerstomach cancerurinary
bladder cancerconnective tissue cancerKaposi's sarcomacervical cancermalignant
glioma, brain cancergastrointestinal stromal tumoradrenal gland cancerskin
cancermuscle cancerbrain cancerhead and neck cancerbile duct cancerparathyroid
carcinomahematologic cancer, lymphatic system cancerocular cancerneuroectodermal
neoplasmthymus cancersynovium cancerappendix cancerbrain cancer, malignant
gliomameningioma, brain cancer, bone cancerretroperitoneal cancermalignant
mesotheliomaoral cavity cancerpituitary cancermeningiomavulva cancergallbladder
cancerpleural cancerfibrosarcomatesticular cancer, germ cell cancerlarynx
cancerurinary system cancerneuroendocrine tumorneuroectodermal neoplasm, brain
cancer, brain cancerheart cancerureter cancerbrain stem cancermediastinal
cancerfallopian tube cancerchondrosarcomaplacenta cancerlipomatous cancergiant
cell tumorperitoneum cancer
Disease Mention
Mutation Mention
Expression change All UPDOWN
Mutation Type All Amino acidNucleotideRS ID
Biomarker Filters
Dataset
Switch to FDA Biomarkers
Organ All ColonLungOvaryBreastProstatePancreasLiverBladderHead and NeckEsophagus
QA Status All Under ReviewCuratedAccepted
Panel All 01
FDA Biomarker Filters
Dataset
Switch to EDRN Biomarkers
Cancer All breast cancerlung non-small cell carcinomaovarian cancercolorectal
cancermelanomaprostate cancer
Phase All NULL
Regulatory Approval Status All class IIClass II_ 510(k)PMAPMA withdrawnPMA_
510(k)PMP513(f)(2)
Drug All Olaparib3062316_ 644241_ 5484725_ 208908_ 50067185 (SID)_ 178103510
(SID)NA31703_ 4212_ 454216_ 148673_ 6918223_ 452548_ 36462_ 30323_
1060756649450Xalkori (crizotinib)Tarceva (erlotinib)GILOTRIFTM (afatinib)TARCEVA
(erlotinib)_ TAGRISSOTM (osimertinib)-TAFINLAR(dabrafenib) in combination with
MEKINIST (trametinib)IRESSA (gefitinib)LynparzaTM (olaparib)RubracaTM
(rucaparib)Erbitux (cetuximab)Erbitux (cetuximab)_ Vectibix
(panitumumab)Vectibix (panitumumab)VemurafenibDabrafenib [Tafinlar] and
Trametinib [MekinistTM]PROGENSA PCA3 Assay
Panel All YN
Differential Expression Filters
Gene Symbol
TCGA cancers All thyroid cancerstomach cancerliver canceruterine cancerbladder
cancerhead_and_neck cancerlung canceresophageal cancercolorectal cancerprostate
cancerkidney cancerbreast cancer
DO cancer type All DOID:11054 / Urinary bladder cancer [UBC]DOID:5041 /
Esophageal cancer [EC]DOID:1324 / Lung cancer [Lunca] & DOID:3907 / Lung
squamous cell carcinomaDOID:1781 / Thyroid cancer [Thyca]DOID:263 / Kidney
cancer [Kidca] & DOID:4465 / Papillary renal cell carcinomaDOID:3571 / Liver
cancer [Livca]DOID:263 / Kidney cancer [Kidca] & Kidney renal clear cell
carcinomaDOID:10534 / Stomach cancer [Stoca]DOID:219 / Colon cancer [Colca] &
DOID:234 / Colon adenocarcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3910 /
Lung adenocarcinomaDOID:11934 / Head and neck cancer [H&NC]DOID:263 / Kidney
cancer [Kidca] & DOID:4471 / Chromophobe adenocarcinomaDOID:1612 / Breast cancer
[BRCA]DOID:10283 / Prostate cancer [PCa]DOID:9256 / Colorectal cancer [Corca] &
DOID:0050861 / Colorectal adenocarcinomaDOID:8618 / Oral cavity cancer [OCC] &
DOID:0050866 / Oral squamous cell carcinomaDOID:2531 / Hematologic cancer
[Hemca] & DOID:0060058 / LymphomaDOID:1612 / Breast cancer [BRCA] & DOID:0060075
/ Estrogen-receptor positive breast cancerDOID:2531 / Hematologic cancer [Hemca]
& DOID:1040 / Chronic lymphocytic leukemiaDOID:5041 / Esophageal cancer [EC] &
DOID:1107 / Esophageal carcinomaDOID:2531 / Hematologic cancer [Hemca] &
DOID:1240 / LeukemiaDOID:1324 / Lung cancer [Lunca]DOID:363 / Uterine cancer
[Uteca] & DOID:1380 / Endometrial cancerDOID:1793 / Pancreatic cancer
[PACA]DOID:1909 / Melanoma [Melan]DOID:2394 / Ovarian cancer [OVCA] & DOID:2152
/ Epithelial ovarian cancerDOID:219 / Colon cancer [Colca]DOID:2394 / Ovarian
cancer [OVCA]DOID:10283 / Prostate cancer [PCa] & DOID:2526 / Prostate
adenocarcinomaDOID:2596 / Larynx cancer [Larca]DOID:2596 / Larynx cancer [Larca]
& DOID:2600 / Laryngeal carcinomaDOID:4362 / Cervical cancer [Cerca] & DOID:2893
/ Cervix carcinomaDOID:3070 / Malignant glioma [MG] & DOID:3069 /
AstrocytomaDOID:3119 / Gastrointestinal system cancer [Gasca]DOID:4159 / Skin
cancer [Skica] & DOID:3151 / Skin squamous cell carcinomaDOID:1612 / Breast
cancer [BRCA] & DOID:3459 / Breast carcinomaDOID:263 / Kidney cancer [Kidca] &
DOID:3672 / Rhabdoid cancerDOID:10534 / Stomach cancer [Stoca] & DOID:3717 /
Stomach adenocarcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3905 / Lung
carcinomaDOID:1324 / Lung cancer [Lunca] & DOID:3908 / Non-small cell lung
carcinoma [NSCLC]DOID:1781 / Thyroid cancer [Thyca] & DOID:3963 / Thyroid
carcinomaDOID:11054 / Urinary bladder cancer [UBC] & DOID:4007 / Bladder
carcinomaDOID:1793 / Pancreatic cancer [PACA] & DOID:4074 / Pancreas
adenocarcinomaDOID:4362 / Cervical cancer [Cerca]DOID:263 / Kidney cancer
[Kidca] & DOID:4450 / Renal cell carcinomaDOID:263 / Kidney cancer [Kidca] &
DOID:4467 / Renal clear cell carcinomaDOID:1324 / Lung cancer [Lunca] &
DOID:5409 / Lung small cell carcinomaDOID:3571 / Liver cancer [Livca] & DOID:684
/ Hepatocellular carcinomaDOID:11054 / Urinary bladder cancer [UBC] & DOID:7244
/ Bladder urachal urothelial carcinomaDOID:2531 / Hematologic cancer [Hemca] &
DOID:8552 / Chronic myeloid leukemiaDOID:2531 / Hematologic cancer [Hemca] &
DOID:9119 / Acute myeloid leukemiaDOID:9256 / Colorectal cancer [CRC]
Log2 F.C. All Greater than 1Less than 1
P value All p < 0.001p < 0.01p < 0.05

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Search:


Gene SymbolUniProtKB/SwissProt ACEDRN Biomarker# BioMuta Mutations# BioXpress
Cancers# Reactome Pathways# Bgee
DatasetsA1BGP04217108  (BioMuta)38  (BioXpress)3400A1CFQ9NQ941383  (BioMuta)38  (BioXpress)3903A2MP01023447  (BioMuta)38  (BioXpress)5964A4GALTQ9NPC479  (BioMuta)38  (BioXpress)855A4GNTQ9UNA3109  (BioMuta)38  (BioXpress)1906AAASQ9NRG9211  (BioMuta)38  (BioXpress)39895AACSQ86V21129  (BioMuta)38  (BioXpress)1926AADACP22760152  (BioMuta)38  (BioXpress)1949AADACL2Q6P093181  (BioMuta)38  (BioXpress)803AADACL4Q5VUY2158  (BioMuta)38  (BioXpress)398AADATQ8N5Z0120  (BioMuta)38  (BioXpress)3764AAED1Q7RTV531  (BioMuta)771AAGABQ6PD74150  (BioMuta)38  (BioXpress)921AAK1Q2M2I8161  (BioMuta)38  (BioXpress)17940AAMDCQ9H7C924  (BioMuta)38  (BioXpress)930AAMPQ1368570  (BioMuta)38  (BioXpress)954AANATQ1661372  (BioMuta)38  (BioXpress)1472AAR2Q9Y312156  (BioMuta)411AARDQ4LEZ348  (BioMuta)397AARSP49588161  (BioMuta)38  (BioXpress)1982

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ABOUT



OncoMX is an integrated cancer mutation and expression resource for exploring
cancer biomarkers alongside related experimental data and functional
information. OncoMX is a collaboration between the George Washington University
(GW), NASA's Jet Propulsion Laboratory (JPL), the Swiss Institute of
Bioinformatics (SIB), and the University of Delaware (UD). The core
knowledgebase of OncoMX is derived from integrated cancer mutation (BioMuta) and
expression (BioXpress) knowledgebases developed at GW. This collection of cancer
data is mapped to biomarkers from EDRN and other sources, and augmented by
normal expression data from Bgee and custom literature mining for mutation
(DiMeX) and expression (DEXTER) software developed at UD. Combining this
information is expected to improve functional interpretation of the reported
variants, expression profiles, and other evidence of cancer involvement.
Resulting data are wrapped into the OncoMX database, mapped to additional
functional information and made available through the web portal. Here, a user
can explore cancer data from various perspectives: for example, the biomarker
vizualization enables a a user to see all attributes related to any biomarker
annotations for a gene of interest. All datasets used by OncoMX, as well as
additional custom datasets, are made available through the parallel data portal
at www.data.oncomx.org.


OUR TEAM



Raja Mazumder Multi-PI, GW


Dan Crichton Multi-PI, JPL


Frédéric Bastian SIB Lead


Vijay Shanker UD Lead


Hayley Dingerdissen GW


Evan Holmes GW

Robel Kahsay GW


Heather Kincaid JPL

Marc Robinson-Rechavi SIB


Stephanie Singleton GW


Nikhita Gogate GW


Edmund Cauley GW









ADDITIONAL PHOTOS COMING...

Amanda Bell GW

Samir Gupta UD

David Liu JPL

Ashique Mahmood UD

Su Peng UD
Dan Lyman GW


CONTACT US



Add Biomarkers to this Resource: Covid-19 Form.




This work is licensed under a Creative Commons Attribution 4.0 International
License.

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