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Submission: On November 07 via api from US — Scanned from DE
Effective URL: https://ensembl.gramene.org/index.html
Submission: On November 07 via api from US — Scanned from DE
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/Multi/Psychic
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<div class="form-field ff-multi"><label for="species" class="ff-label">Search:</label>
<div class="ff-right ff-inline"><span class="inp-group"><select id="species" name="species" class="fselect input">
<option value="">All species</option>
<option disabled="disabled" value="">---</option>
<optgroup label="Favourite species">
<option value="Arabidopsis_thaliana">Arabidopsis thaliana</option>
<option value="Oryza_sativa">Oryza sativa Japonica Group</option>
<option value="Triticum_aestivum">Triticum aestivum</option>
<option value="Hordeum_vulgare">Hordeum vulgare</option>
<option value="Zea_mays">Zea mays</option>
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<option disabled="disabled" value="">---</option>
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<option value="Arabidopsis_halleri">Arabidopsis halleri</option>
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<option value="Arabidopsis_thaliana">Arabidopsis thaliana</option>
<option value="Arabis_alpina">Arabis alpina</option>
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<option value="Avena_sativa_OT3098">Avena sativa OT3098</option>
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<option value="Beta_vulgaris">Beta vulgaris</option>
<option value="Brachypodium_distachyon">Brachypodium distachyon</option>
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<option value="Camelina_sativa">Camelina sativa</option>
<option value="Cannabis_sativa_female">Cannabis sativa female</option>
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<option value="Chara_braunii">Chara braunii</option>
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<option value="Chlamydomonas_reinhardtii">Chlamydomonas reinhardtii</option>
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<option value="Oryza_glaberrima">Oryza glaberrima</option>
<option value="Oryza_glumipatula">Oryza glumipatula</option>
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<option value="Oryza_sativa_n22">Oryza sativa (circum-Aus1 var. N22)</option>
<option value="Oryza_sativa_natelboro">Oryza sativa (circum-Aus2 var. Natel Boro)</option>
<option value="Oryza_sativa_arc">Oryza sativa (circum-Basmati var. ARC 10497)</option>
<option value="Oryza_sativa_chaomeo">Oryza sativa (Geng/Japonica-sbtrp var. Chao Meo)</option>
<option value="Oryza_sativa_azucena">Oryza sativa (Geng/Japonica-trop1 var. Azucena)</option>
<option value="Oryza_sativa_ketannangka">Oryza sativa (Geng/Japonica-trop2 var. Ketan Nangka)</option>
<option value="Oryza_sativa_zs97">Oryza sativa (Xian/Indica-1A var. Zhenshan 97)</option>
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<option value="Oryza_sativa_lima">Oryza sativa (Xian/Indica-3A var. Lima)</option>
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<option value="Quercus_lobata">Quercus lobata</option>
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<option value="Rosa_chinensis">Rosa chinensis</option>
<option value="Saccharum_spontaneum">Saccharum spontaneum</option>
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<option value="Selaginella_moellendorffii">Selaginella moellendorffii</option>
<option value="Sesamum_indicum">Sesamum indicum</option>
<option value="Setaria_italica">Setaria italica</option>
<option value="Setaria_viridis">Setaria viridis</option>
<option value="Solanum_lycopersicum">Solanum lycopersicum</option>
<option value="Solanum_tuberosum">Solanum tuberosum</option>
<option value="Solanum_tuberosum_RH8903916">Solanum tuberosum RH89-039-16</option>
<option value="Sorghum_bicolor">Sorghum bicolor</option>
<option value="Theobroma_cacao_criollo">Theobroma cacao Belizian Criollo B97-61/B2</option>
<option value="Theobroma_cacao">Theobroma cacao Matina 1-6</option>
<option value="Trifolium_pratense">Trifolium pratense</option>
<option value="Triticum_aestivum">Triticum aestivum</option>
<option value="Triticum_aestivum_arinalrfor">Triticum aestivum Arinalrfor</option>
<option value="Triticum_aestivum_cadenza">Triticum aestivum Cadenza</option>
<option value="Triticum_aestivum_claire">Triticum aestivum Claire</option>
<option value="Triticum_aestivum_jagger">Triticum aestivum Jagger</option>
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</select><label for="q">for</label></span><wbr><span class="inp-group"><input name="q" id="q" value="" size="30" class="_string optional ftext query inactive input" type="text"><input type="submit" class="fbutton" value="Go"></span><wbr>
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<div class="ff-notes">
<p class="search-example">e.g. <a class="nowrap" href="/Multi/Psychic?q=Carboxy*;site=ensemblunit">Carboxy*</a> or <a class="nowrap" href="/Multi/Psychic?q=chx28;site=ensemblunit">chx28</a></p>
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</form>Text Content
Login/Register * BLAST * BioMart * Tools * Downloads * Help * Feedback * UploadData More ▼ Search terms Search Gramene Search Ensembl Genomes Search all species Search EBI Search: All species---Arabidopsis thalianaOryza sativa Japonica GroupTriticum aestivumHordeum vulgareZea mays---Actinidia chinensisAegilops tauschiiAmborella trichopodaAnanas comosusArabidopsis halleriArabidopsis lyrataArabidopsis thalianaArabis alpinaAsparagus officinalisAvena sativa OT3098Avena sativa SangBeta vulgarisBrachypodium distachyonBrassica junceaBrassica napusBrassica oleraceaBrassica rapaBrassica rapa R-o-18Cajanus cajan (pigeon pea) - GCA_000340665.1Camelina sativaCannabis sativa femaleCapsicum annuumChara brauniiChenopodium quinoaChlamydomonas reinhardtiiChondrus crispusCitrullus lanatusCitrus clementinaCoffea canephoraCorchorus capsularisCorylus avellanaCorymbia citriodoraCucumis meloCucumis sativusCyanidioschyzon merolaeCynara cardunculusDaucus carotaDigitaria exilisDioscorea rotundataEchinochloa crus-galliEragrostis curvulaEragrostis tefEucalyptus grandisEutrema salsugineumFicus caricaFraxinus excelsiorGaldieria sulphurariaGlycine maxGossypium raimondiiHelianthus annuusHordeum vulgareHordeum vulgare GoldenPromiseHordeum vulgare TRITEXIpomoea trilobaJuglans regiaKalanchoe fedtschenkoiLactuca sativaLeersia perrieriLolium perenneLupinus angustifoliusMalus domestica GoldenManihot esculentaMarchantia polymorphaMedicago truncatulaMusa acuminataNicotiana attenuataNymphaea colorataOlea europaeaOlea europaea var. sylvestrisOryza barthiiOryza brachyanthaOryza glaberrimaOryza glumipatulaOryza longistaminataOryza meridionalisOryza nivaraOryza punctataOryza rufipogonOryza sativa (circum-Aus1 var. N22)Oryza sativa (circum-Aus2 var. Natel Boro)Oryza sativa (circum-Basmati var. ARC 10497)Oryza sativa (Geng/Japonica-sbtrp var. Chao Meo)Oryza sativa (Geng/Japonica-trop1 var. Azucena)Oryza sativa (Geng/Japonica-trop2 var. Ketan Nangka)Oryza sativa (Xian/Indica-1A var. Zhenshan 97)Oryza sativa (Xian/Indica-1B1 var. IR64)Oryza sativa (Xian/Indica-1B2 var. PR106)Oryza sativa (Xian/Indica-2A var. Gobol Sail)Oryza sativa (Xian/Indica-2B var. Larha Mugad)Oryza sativa (Xian/Indica-3A var. Lima)Oryza sativa (Xian/Indica-3B1 var. Khao Yai Guang)Oryza sativa (Xian/Indica-3B2 var. Liu Xu)Oryza sativa (Xian/Indica-adm var. Minghui 63)Oryza sativa Indica GroupOryza sativa Japonica GroupOstreococcus lucimarinusPanicum hallii FIL2Panicum hallii HAL2Papaver somniferumPhaseolus vulgarisPhyscomitrium patensPistacia veraPisum sativumPopulus trichocarpaPrunus aviumPrunus dulcisPrunus persicaQuercus lobataQuercus suberRosa chinensisSaccharum spontaneumSecale cerealeSelaginella moellendorffiiSesamum indicumSetaria italicaSetaria viridisSolanum lycopersicumSolanum tuberosumSolanum tuberosum RH89-039-16Sorghum bicolorTheobroma cacao Belizian Criollo B97-61/B2Theobroma cacao Matina 1-6Trifolium pratenseTriticum aestivumTriticum aestivum ArinalrforTriticum aestivum CadenzaTriticum aestivum ClaireTriticum aestivum JaggerTriticum aestivum JuliusTriticum aestivum KariegaTriticum aestivum LancerTriticum aestivum LandmarkTriticum aestivum MaceTriticum aestivum Norin61Triticum aestivum ParagonTriticum aestivum Refseqv2Triticum aestivum RenanTriticum aestivum RobigusTriticum aestivum StanleyTriticum aestivum Sy MattisTriticum aestivum WeebillTriticum dicoccoidesTriticum speltaTriticum turgidumTriticum urartuVigna angularisVigna radiataVigna unguiculataVitis viniferaZea maysfor e.g. Carboxy* or chx28 ALL GENOMES -- Select a species --Arabidopsis thalianaOryza sativa Japonica GroupTriticum aestivumHordeum vulgareZea maysAegilops tauschiiAnanas comosusAsparagus officinalisAvena sativa OT3098Avena sativa SangBrachypodium distachyonDigitaria exilisDioscorea rotundataEchinochloa crus-galliEragrostis curvulaEragrostis tefHordeum vulgareHordeum vulgare cultivarsLeersia perrieriLolium perenneMusa acuminataOryza barthiiOryza brachyanthaOryza glaberrimaOryza glumipatulaOryza longistaminataOryza meridionalisOryza nivaraOryza punctataOryza rufipogonOryza sativa Indica GroupOryza sativa Japonica GroupOryza sativa cultivarsPanicum hallii HAL2Panicum hallii ecotypesSaccharum spontaneumSecale cerealeSetaria italicaSetaria viridisSorghum bicolorTriticum aestivumTriticum aestivum cultivarsTriticum dicoccoidesTriticum speltaTriticum turgidumTriticum urartuZea maysActinidia chinensisArabidopsis halleriArabidopsis lyrataArabidopsis thalianaArabis alpinaBeta vulgarisBrassica junceaBrassica napusBrassica oleraceaBrassica rapa R-o-18Brassica rapa cultivarsCajanus cajan (pigeon pea) - GCA_000340665.1Camelina sativaCannabis sativa femaleCapsicum annuumChenopodium quinoaCitrullus lanatusCitrus clementinaCoffea canephoraCorchorus capsularisCorylus avellanaCorymbia citriodoraCucumis meloCucumis sativusCynara cardunculusDaucus carotaEucalyptus grandisEutrema salsugineumFicus caricaFraxinus excelsiorGlycine maxGossypium raimondiiHelianthus annuusIpomoea trilobaJuglans regiaKalanchoe fedtschenkoiLactuca sativaLupinus angustifoliusMalus domestica GoldenManihot esculentaMedicago truncatulaNicotiana attenuataOlea europaeaOlea europaea varietiesPhaseolus vulgarisPistacia veraPisum sativumPopulus trichocarpaPrunus aviumPrunus dulcisPrunus persicaQuercus lobataQuercus suberRosa chinensisSesamum indicumSolanum lycopersicumSolanum tuberosumSolanum tuberosum cultivarsTheobroma cacao Matina 1-6Theobroma cacao cultivarsTrifolium pratenseVigna angularisVigna radiataVigna unguiculataVitis viniferaPhyscomitrium patensChlamydomonas reinhardtiiOstreococcus lucimarinusChondrus crispusCyanidioschyzon merolaeGaldieria sulphurariaChara brauniiMarchantia polymorphaNymphaea colorataPapaver somniferumSelaginella moellendorffiiAmborella trichopoda View full list of all species FAVOURITE GENOMES For easy access to commonly used genomes, drag from the bottom list to the top one Favourites Done Restore default list Other available species Arabidopsis thaliana TAIR10 Oryza sativa Japonica Group IRGSP-1.0 Triticum aestivum IWGSC Hordeum vulgare MorexV3_pseudomolecules_assembly Zea mays Zm-B73-REFERENCE-NAM-5.0 WHAT'S NEW IN RELEASE 68 NEW GENOMES (22): In this release, we are adding 15 new rice cultivars: * ARC GCA_009831255.1 * Azucena GCA_009830595.1 * Chao Meo GCA_009831315.1 * Gobol Sail (Balam) GCA_009831025.1 * IR64 GCA_009914875.1 * Ketan Nangka GCA_009831275.1 * Khao Yai Guang GCA_009831295.1 * Larha Mugad GCA_009831355.1 * Lima GCA_009831355.1 * Liu Xu GCA_009829375.1 * MH63 GCA_001618785.1 * N22 GCA_001952365.2 * Natel Boro GCA_009831335.1 * PR106 GCA_009831045.1 * ZS97 GCA_001618795.1 Three new wheat assemblies: * Triticum aestivum IWGSC RefSeq v2.1 GCA_018294505.1 - Prior assembly (non-sequential) still available: IWGSC - GCA_900519105.1 * T. aestivum cv. Renan GCA_937894285.1 * T. aestivum cv. Kariega GCA_910594105.1 and the following plant genomes: * Avena sativa cv. Sang (Oat) GCA_910574605.1 * A. sativa cv. Ot3098 (Oat) GCA_022788535.1 * Fraxinus excelsior (ash tree) GCA_900149125.1 * Cajanus cajan (pigeon pea) GCA_000340665.1 UPDATED GENOMES (2): * Eragrostis tef (teff) GCA_024500355.1 - Prior assembly (non-sequential) replaced: GCA_000970635.1 * Populus trichocarpa (black cottonwood) GCA_000002775.4 - Prior assembly (sequential) replaced: GCA_000002775.3 UPDATED GENE ANNOTATION: * Oryza sativa (rice) GCA_001433935.1 NEW FEATURES: * eFP browsers for Arabidopsis, maize, sorghum, and glycine * Closest annotated gene homolog or model species homolog with percent identiy provided for curated genes in the search interface * For rice, maize, grapevine and sorghum genes, a link to the gene's entry in its corresponding pangenome site * Submit a gene's function form, see example for the Os05g0421750. Click on the "Add Papers" tab. UPDATED SOFTWARE: * Genome browser and underlying database schema and API updated to Ensembl 110. Check which features are supported on each species here; if you would like to request a new species please email Gramene’s helpdesk. Note that only 110 plant genomes were included in the Compara Gene Family Trees analysis, which will change depending on data available for each release. You can find the list of included genomes in Ensembl’s Compara github repository. Click below for a summary of currently available Compara analyses: * Protein gene tree analysis * Whole-genome alignments NEW WHEAT ASSEMBLY Gramene hosts the latest wheat assembly from the IWGSC (RefSeq v1.0). Current data includes: * The IWGSC RefSeq v1.1 gene annotation. * Alignment of 98,270 high confidence genes from the TGACv1 annotation. * The Axiom 820K SNP Array from CerealsDB. * Thr Axiom 35K SNP array from CerealsDB. * EMS-induced mutations from sequenced TILLING populations (Kronos and Cadensa). * Inter-Homeologous Variants (IHVs) between the A, B and D genome components. * Assembly to assembly mapping and gene ID mapping to the previous TGAC v1 assembly and annotation. * Whole genome alignments to rice, brachypodium and barley. * The TGACv1 assembly will still be availble via the Ensembl Plants archive site. POLYPLOID VIEW ENABLED Polyploid view for wheat and Emmer Zavitan wheat (Triticum dicoccoides) has been enabled, allowing users to view alignments among multiple wheat components simultaneously. This work is a joint project between EnsemblGenomes at the European Bioinformatics Institute and the group of Doreen Ware at the Cold Spring Harbor Laboratory, who have developed the Gramene database, a resource for plant comparative genomics based on Ensembl technology. A common set of databases are available through EnsemblGenomes and Gramene, and the two groups are collaborating on the integration of content, quality control and the development of new features. ORGANELLE ANNOTATION For annotations relating to Organelles, see the organelles page Gramene release 68 - Nov 2023 © EMBL-EBI EMBL-EBI About Gramene | About EnsemblGenomes | Contact Us | Help . -------------------------------------------------------------------------------- ABOUT US About us Contact us Citing Gramene Cookies GET HELP Using this website Documentation Adding custom tracks Downloading data OUR SISTER SITES Oryza Browser Maize Browser Grapevine Browser SorghumBase FOLLOW US Blog Twitter . * Personal Data This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use I Agree