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 * Allen Brain Map
 * Atlases and Data
    * * Cell Types Database
        * Human and mouse brain data
        * Search cell feature data
        * RNA-Seq data
      * Brain Observatory
        * Visual Behavior Neuropixels
        * Visual Behavior – 2P Calcium imaging
        * Visual Coding – Neuropixels
        * Visual Coding – 2P Calcium imaging
        * Software development toolkit
        * Transgenic lines
      * Mouse Brain Connectivity Atlas
        * Neuron projection maps
        * Allen Brain Explorer
        * Transgenic lines
      * Mouse Brain Atlas
        * In situ hybridization (ISH) data
        * Reference atlas, adult
        * Reference histology
        * Mouse strain diversity study
      * Developing Mouse Brain Atlas
        * In situ hybridization (ISH) data
        * Reference atlases
      * Mouse Spinal Cord Atlas
        * In situ hybridization (ISH) data
        * Reference atlases (adult, juvenile)
      
      * Gene Expression Navigators
        
        * Adult mouse
        * Developing mouse
      * Human Brain Atlas
        * In situ hybridization (ISH) data
        * Search RNA microarray data
        * Reference atlases
        * Download RNA-Seq, microarray
        * Download MRI, DTI
      * Developing Human Brain Atlas
        * In situ hybridization (ISH) data
        * RNA-Seq data
        * RNA microarray data
        * Reference atlases
        * Download RNA-Seq, microarray
        * Download MRI, DTI
      * Developing Non-human primate (NHP) Atlas
        * In situ hybridization (ISH) data
        * RNA microarray data
        * Reference histology
      * Aging, Dementia & TBI Study
        * RNA-Seq data, human
        * Donor descriptions
        * Download RNA-Seq, clinical data
      * Ivy Glioblastoma Atlas Project
        * RNA-Seq data, human
        * In situ hybridization (ISH) data
        * Donor descriptions
        * Download RNA-Seq, clinical data
      * Schizophrenia Study: Gene expression
        * In situ hybridization (ISH) data, human
      * Autism study: Gene expression
        * In situ hybridization (ISH) data, human
      * Sleep Study: Gene expression
        * In situ hybridization (ISH) data, mouse

 * Browse Data
 * Explore
    * * Overview of Brain Map Resources
      * Transcriptional Landscape of the Brain
      * Behavioral Circuits and Sensory Processing
      * Connectivity Matrices
      * Computational Modeling & Theory
      * Cell Taxonomies
      * Toolkit

 * Technical Resources
    * * Application Programming Interface (API)
        * Access data & utilities
        * Data model
        * Example data queries
      * Github
      * Software Development Toolkit (AllenSDK)
        * Data access
        * Install guide
        * Source documentation
        * Example Jupyter notebooks
      * Toolkit
        * Transgenic mice
        * Viruses
        * Cell lines
        * Neuroimaging
        * Hardware

 * Allen Institute
    * Allen Institute for Brain Science
    * Allen Institute for Cell Science
    * Allen Institute for Immunology
    * The Paul G. Allen Frontiers Group
    * About the Allen Institute
   
   Updates & Support
    * Latest Data Release
    * Events and Training
    * Community Forum
    * Contact us
    * Citation Policy

Accelerating progress toward understanding the brain.


NEW DATA AND TOOLS

ALLEN BRAIN CELL ATLAS

The Allen Brain Cell Atlas provides a platform for visualizing multimodal single
cell data across the mammalian brain.

Explore

SEATTLE ALZHEIMER’S DISEASE BRAIN CELL ATLAS

A multifaceted resource for exploring the cellular and molecular basis of
Alzheimer's Disease.

View Data

SYNAPTIC PHYSIOLOGY

Dataset exploring connectivity and synaptic signaling in mouse and human
neocortex

View Data

EXPLORE MOUSE PATCH-SEQ DATA

New visual way to browse patch-seq data from 3,600 mouse cortical neurons.

Explore

BRAIN OBSERVATORY: VISUAL BEHAVIOR 2-PHOTON

New Brain Observatory data: neural activity from 34,619 cortical cells in 82
mice trained to do a visually-guided task.

Data & Details

NEW WAY TO BROWSE DATA

Use keywords related to your work to find data from Allen Brain Map and the
Brain Initiative Cell Census Network.

Browse Data


ALLEN BRAIN ATLASES AND DATA

CELL TYPES DATABASE

A database of biological features derived from single cells, from both human and
mouse.

View Data

BRAIN OBSERVATORY

A new approach to open data, featuring a survey of in vivo recordings from the
mouse visual cortex.

View Data

MOUSE BRAIN CONNECTIVITY ATLAS

A brain-wide map of neural projections, including cell class-specific data.

View Atlas

REFERENCE ATLASES

High resolution anatomical reference atlases and histology for mouse and human.

View Atlases

MOUSE BRAIN ATLAS

A unique multimodal atlas of the adult mouse brain, featuring anatomic and
genomic data.

View Atlas

DEVELOPING MOUSE BRAIN ATLAS

A detailed atlas of gene expression across 7 stages of development.

View Atlas

MOUSE SPINAL CORD ATLAS

A detailed atlas of gene expression across the adult and juvenile mouse spinal
cord.

View Atlas

ADULT AND DEVELOPING NHP ATLAS

The NIH Blueprint Non-Human Primate Atlas characterizes the developing rhesus
macaque brain.

View Atlas

HUMAN BRAIN ATLAS

A unique multimodal atlas of the adult human brain, featuring anatomic and
genomic data.

View Atlas

DEVELOPING HUMAN BRAIN

The BrainSpan project is a detailed atlas of gene expression across human
development.

View Data

AGING, DEMENTIA AND TBI

A dataset for exploring the neuropathology and genomic features of disease and
aging.

View Data

IVY GLIOBLASTOMA ATLAS PROJECT

IvyGAP is a dataset for exploring the anatomic and genomic basis of
glioblastoma.

View Atlas

SEATTLE ALZHEIMER'S DISEASE BRAIN CELL ATLAS

A multifaceted resource for exploring the cellular and molecular basis of
Alzheimer's Disease.

View Data


EXPLORE


OVERVIEW

Learn about our major datasets and tools to determine which are the best fit for
your needs.

Explore


TRANSCRIPTIONAL LANDSCAPE OF THE BRAIN

Highlights and insights into gene expression, viewed through Allen Brain Atlas
datasets and publications

Explore


BEHAVIORAL CIRCUITS & SENSORY PROCESSING

Data and publications from the Allen Brain Observatory reveal new complexity of
neuronal circuitry

Explore


CONNECTIVITY MATRICES

Multiscale datasets and publications uncover how the brain is wired

Explore


COMPUTATIONAL MODELING & THEORY

Brain-wide, circuit-level and cell-level biophysical models, modeling tools and
key publications

Explore


CELL TAXONOMIES

View data-driven classifications and key publications analyzing cell types of
the mammalian brain

Explore


TOOLKIT

Access information about biological and technical resources created by the Allen
Institute for Brain Science

Explore


WHAT'S NEW

LATEST DATA RELEASE

View Latest

SCIENTIFIC PUBLICATIONS

View All

EVENTS AND TRAINING

View All


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The Allen Institute for Brain Science uses a unique approach to generate data,
tools and knowledge for researchers to explore the biological complexity of the
mammalian brain. This portal provides access to high quality data and web-based
applications created for the benefit of the global research community.

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Cell Science Allen Institute for Immunology The Paul G. Allen Frontiers Group

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