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BACTERIAL AND VIRAL BIOINFORMATICS RESOURCE CENTER

Welcome to the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), an
information system designed to support research on bacterial and viral
infectious diseases. The BV-BRC combines the data and tools from the Legacy BRC
resources: PATRIC, the bacterial BRC, and IRD and ViPR, the viral BRCs. If you
are transitioning from PATRIC or IRD/ViPR, please refer to the Quick Start Guide
to learn how to get started with BV-BRC. Please contact us if you have any
questions or issues.


SEARCH

All Data Types


Global Search
Find a gene, genome, microarray, etc
All terms



BROWSE

BACTERIA ARCHAEA VIRUSES EUKARYOTIC HOSTS


ANALYZE DATA IN BV-BRC

Upload and analyze your data in the private workspace. Register or Login to get
started.


SEARCH

Taxa Genomes Proteins Specialty Genes All Searches...


ANALYZE

Assembly Annotation BLAST MSA All Tools & Services...


MANAGE DATA

Access Private Workspace Save Search Results Upload Data Access Analysis Jobs
Share and Publish


BATCH ACCESS

Command-Line Interface Data API FTP
QUICK START REFERENCE GUIDES TUTORIALS


INFORMATION FOR PATRIC USERS

The new BV-BRC system is built on the PATRIC system. Viral data and analysis
tools and services from IRD/ViPR have now been integrated into the resource.


BV-BRC Data and Functionality Overview


INFORMATION FOR IRD/VIPR USERS

The new BV-BRC system is built on the PATRIC Bacterial BRC system and
incorporates data and tools from IRD and ViPR. The following materials are
designed to aid IRD and ViPR users in using BV-BRC.


IRD/ViPR to BV-BRC Mapping


OUTBREAKS

Influenza H5N1 2024 SARS-CoV-2


NEWS & ANNOUNCEMENTS

 * BV-BRC H5N1 WEBINAR
   
   Learn how to find and analyze H5N1 data in BV-BRC. Join us! Register! ...
   read more

 * BV-BRC QUICK START GUIDES
   
   Quick start guides and short video tutorials designed to orient new users as
   well as users from the legacy PATRIC, ... read more

 * BACTERIAL BIOINFORMATICS COURSE ON COURSERA
   
   The BV-BRC offers an online Bacterial Bioinformatics course, freely available
   through Coursera. This course provides demonstrations and exercises for
   performing ... read more




COMMUNITY NEWS

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BRC PROGRAM


FUNDING STATEMENT

This project has been funded in whole or in part with Federal funds from the
National Institute of Allergy and Infectious Diseases, National Institutes of
Health, Department of Health and Human Services, under Contract No.
75N93019C00076, awarded to the University of Chicago.


FOLLOW US

Bacterial Pathogens
Acinetobacter Francisella
Bacillus Helicobacter
Bartonella Listeria
Borreliella Mycobacterium
Brucella Pseudomonas
Burkholderia Rickettsia
Campylobacter Salmonella
Chlamydia Shigella
Clostridium Staphylococcus
Coxiella Streptococcus
Ehrlichia Vibrio
Escherichia Yersinia

All Bacteria All Archaea All Viruses Eukaryotic Hosts
Viral Families
Adenoviridae Orthomyxoviridae
Asfarviridae Paramyxoviridae
Bunyavirales Parvoviridae
Caliciviridae Picornaviridae
Coronaviridae Pneumoviridae
Filoviridae Polyomaviridae
Flaviviridae Poxviridae
Hepadnaviridae Reovirales
Hepeviridae Rhabdoviridae
Herpesvirales Togaviridae
Featured Viruses
Bacteriophages Influenza A virus
Dengue virus Mammarenavirus lassaense
Ebolavirus Monkeypox virus
Enterovirus SARS-CoV-2
Hepacivirus Zika virus

Advanced Search
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Genomics
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Comprehensive Genome Analysis (B)
BLAST
Primer Design
Similar Genome Finder
Genome Alignment
Variation Analysis
Tn-Seq Analysis
Phylogenomics
Bacterial Genome Tree
Viral Genome Tree
Gene/Protein Tree
Protein Tools
MSA and SNP Analysis
Meta-CATS
Proteome Comparison
Protein Family Sorter
Comparative Systems
Metagenomics
Taxonomic Classification
Metagenomic Binning
Metagenomic Read Mapping
Transcriptomics
RNA-Seq Analysis
Expression Import



Utilities
Fastq Utilities
ID Mapper



Viral Tools
SARS-CoV-2 Genome Analysis
SARS-CoV-2 Wastewater Analysis
Influenza Sequence Submission
Influenza HA Subtype Conversion
Subspecies Classification
Sequence Feature Variant Types



Outbreak Tracker
Influenza H5N1 2024
SARS-CoV-2

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 Workspaces

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Usage Metrics

About BV-BRC
Contact Us
Our Team
Announcements
BRC Calendar

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