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Submitted URL: http://usegalaxy.eu/
Effective URL: https://usegalaxy.eu/
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Submission: On June 04 via api from DE — Scanned from DE
Effective URL: https://usegalaxy.eu/
Submission Tags: tranco_l324
Submission: On June 04 via api from DE — Scanned from DE
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Europe * Tools and Current History * Workflow * Visualize * Data * Data Libraries * Histories * Pages * Visualizations * Workflows * Help * Galaxy Help * Support * Videos * Community Hub * How to Cite Galaxy * Interactive Tours * About * Terms and Conditions * Log in or Register * See Running Interactive Tools * See Galaxy Training Materials * Enable/Disable Window Manager Using 0% Side panel drag handle TOOLS View all tool panel configurations * Full Tool Panel * ...by Ontology * EDAM Operations * EDAM Topics Upload Data Get Data Send Data Collection Operations General Text Tools Text Manipulation Convert Formats Filter and Sort Join, Subtract and Group Genomic File Manipulation Convert Formats FASTA/FASTQ Quality Control SAM/BAM BED VCF/BCF Nanopore Common Genomics Tools Operate on Genomic Intervals Fetch Sequences / Alignments Genomics Analysis Annotation Multiple Alignments Assembly Mapping Variant Calling Genome editing RNA-Seq RNA Analysis Peak Calling Epigenetics Phylogenetics Phenotype Association Single-cell Spatial Omics Genomics Toolkits Picard deepTools Gemini EMBOSS NCBI Blast HiCExplorer RAD-seq GraphClust MiModD Metagenomics Metagenomic Analysis Qiime Mothur DNA Metabarcoding Data and Metadata Management Virology Proteomics, Metabolomics, Chemistry Proteomics Metabolomics ChemicalToolBox Statistics and Visualisation Statistics Machine Learning Graph/Display Data Muon Spectroscopy Miscellaneous Tools Evolution Motif Tools Test Tools GIS Data Handling Animal Detection on Acoustic Recordings Compute indicators for satellite remote sensing Regional Variation Genome Diversity Climate Analysis Apollo Imaging Species abundance Compute indicators for turnover boulders fields Ecoregionalization Indicators from geometric mean Astronomy Interactive tools OBO Ontology manipulation HCA-Single Cell Other Tools Biodiversity data exploration Sanger Sequencing Extract Features QIIME 2 Metagenomic Analysis GATK Tools Built-in Converters Workflows All workflows Side panel drag handle HISTORY History Options * You have 1 histories. * Show Histories Side-by-Side * -------------------------------------------------------------------------------- * Resume Paused Jobs * -------------------------------------------------------------------------------- * Copy this History * Delete this History * Export Tool Citations * Export History to File * Archive History * Extract Workflow * Show Invocations * -------------------------------------------------------------------------------- * Share or Publish * Set Permissions * Make Private SWITCH TO HISTORY × Filter histories Loaded 0 out of 1 histories Click a history to switch to it UNNAMED HISTORY 0 B 0 History actions * With entire history... * Copy Datasets THIS HISTORY IS EMPTY. You can load your own data or get data from an external source. UPLOAD FROM DISK OR WEB * Regular * Composite * Collection * Rule-based Drop files here Type (set all): Auto-detect * Auto-detect * 4dn_pairs * 4dn_pairsam * a3m * ab1 * agilentbrukeryep.d.tar * agilentmasshunter.d.tar * agp * ampvis2 * arb * arb.gz * arff * asn1 * asn1-binary * augustus * avi * axt * bam * bcf * bcf_uncompressed * bcsl.model * bcsl.ts * bed * bed12 * bed6 * bed_tabix.gz * bedgraph * bedstrict * bgzip * bigbed * bigwig * bil * biom1 * biom2 * blastxml * blib * bref3 * brukerbaf.d.tar * brukertdf.d.tar * bus * castep * cel * cell * chain * chira.sqlite * chrint * cif * cisml * ckpt * cmap * cml * cnn * cnr * cns * consensusxml * cool * cps * cpt * cram * csfasta * csv * ct * ctl.result * cuffdiff.sqlite * cxb * d3_hierarchy * daa * dada2_dada * dada2_errorrates * dada2_mergepairs * dada2_sequencetable * dada2_uniques * dbn * dbnsfp.tabular * dcd * deeptools_compute_matrix_archive * deeptools_coverage_matrix * den_fmt * dlib * drf * dta * dta2d * dzi * edr * edta * eland * elandmulti * elib * embl * encodepeak * excel.xls * expression.json * extxyz * fai * fast5 * fast5.tar * fast5.tar.bz2 * fast5.tar.gz * fast5.tar.xz * fasta * fasta.gz * fastg * fastq * fastq.bz2 * fastq.gz * fastqcssanger * fastqcssanger.bz2 * fastqcssanger.gz * fastqillumina * fastqillumina.bz2 * fastqillumina.gz * fastqsanger * fastqsanger.bz2 * fastqsanger.gz * fastqsolexa * fastqsolexa.bz2 * fastqsolexa.gz * fcs * featurexml * ffdata * ffindex * fits * flowclr * flowframe * flowmfi * flowscore * flowset * flowstat1 * flowstat2 * flowstat3 * flowtext * flv * fps * fqtoc * fsom * gafa.sqlite * gal * gatk_dbsnp * gatk_interval * gatk_recal * gatk_report * gatk_tranche * gemini.sqlite * genbank * genbank.gz * genenotebook * geojson * gfa1 * gfa1.gz * gfa2 * gfa2.gz * gff * gff3 * gff3.bz2 * gff3.gz * gff_tabix.gz * gii * gii.gz * gmsh.geo * gmsh.msh * gpr * grd * grd.tgz * grib * gro * gtf * h5 * h5ad * h5mlm * hdf4 * hdr * hdt * hep.root * hexrd.accepted_orientations * 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* mothur.otulabels * mothur.pair.dist * mothur.quan * mothur.rabund * mothur.rdp.taxonomy * mothur.ref.taxonomy * mothur.relabund * mothur.sabund * mothur.seq.taxonomy * mothur.sff.flow * mothur.shared * mothur.square.dist * mothur.summary * mothur.tax.summary * mothur.tre * mov * mp3 * mp4 * mpg * mrc * mrm * ms2 * msh * msp * mtx * mz.sqlite * mz5 * mzdata * mzid * mzml * mzq * mzqc * mztab * mztab2 * mzxml * n3 * ncbi_genome_dataset.zip * ncbitaxonomy.sqlite * ndx * neper.mscell * neper.points * neper.points.tsv * neper.tesr * neper.tess * netcdf * newick * nex * nhx * nii1 * nii1.gz * nii2 * nii2.gz * nmrml * no_unzip.zip * npy * npz * nt * obo * odgi * ome.tiff * onnx * osw * owl * oxlicg * oxligl * oxling * oxliss * oxlist * oxlits * paf * paf.gz * par * param * paramxml * parquet * pdb * pdbqt * pdf * peff * peplist * peptideshaker_archive * pepxml * pepxml.tsv * phar * phylip * phyloseq * phyloxml * picard_interval_list * pileup * pithya.model * pithya.property * pithya.result * plyascii * plybinary * png * postgresql * pov * pqp * pqr * pretext * prj * prmtop * probam * probed * prof * protobuf2 * protobuf3 * protxml * protxml.tsv * psl * psms * pssm-asn1 * ptkscmp * qcml * qcml * qiime2.tabular * qname_sorted.bam * qual454 * qualillumina * qualsolexa * qualsolid * qza * qzv * rdata * rdata.camera.negative * rdata.camera.positive * rdata.camera.quick * rdata.msnbase.raw * rdata.sce * rdata.xcms.fillpeaks * rdata.xcms.findchrompeaks * rdata.xcms.group * rdata.xcms.raw * rdata.xcms.retcor * rdf * rdock_as * rds * rma6 * rna_eps * sam * sbml * sbol * scf * scidx * scool * scool * sdf * searchgui_archive * sf3 * sff * sif * smat * smi * snaphmm * snpeffdb * snpmatrix * snptest * source.c * source.cpp * source.cs * source.go * source.h * source.py * source.rs * spec.xml * splib_noindex * sqlite * sqmass * sra * sra_manifest.tabular * star * stl * stl * stockholm * storm.check * storm.sample * svg * tabular * tabular.gz * tandem * tar * taxonomy * tck * textgrid * tgz * thermo.raw * tiff * toml * top * tpr * trackhub * trafoxml * trafoxml * traml * trk * trr * tsv * ttl * twobit * txt * uniprotxml * unsorted.bam * vcf * vcf_bgzip * vel * vg * visium.tar.gz * vtkascii * vtkbinary * watersmasslynx.raw.tar * wav * wiff.tar * wiff2.tar * wig * xg * xgmml * xlsx * xmfa * xml * xquest.xml * xsd * xtc * xvg * xyz * yaml * zip * zset.geof * No matching file types found. * List is empty. This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed. Reference (set all): unspecified (?) * unspecified (?) * A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) * A. gambiae Oct. 2006 (AgamP3/anoGam3) (anoGam3) * A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4) (apiMel4) * A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) * A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1) * A. mellifera genome (apiMel3, Baylor HGSC Amel_3.0) * ARS1 Aug. 2016 Capra hircus (goat) (San Clemente 2016 USDA) (GCF_001704415.2) * Aardvark May 2012 (OryAfe1.0/oryAfe1) (oryAfe1) * Acaryochloris marina MBIC11017 (12997) * Acholeplasma laidlawii PG-8A (19259) * Acidiphilium cryptum JF-5 (acidCryp_JF_5) * Acidobacteria bacterium Ellin345 (acidBact_ELLIN345) * Acidothermus cellulolyticus 11B (acidCell_11B) * Acidovorax avenae subsp. citrulli AAC00-1 (15708) * Acidovorax sp. JS42 (acidJS42) * Acinetobacter baumannii (13001) * Acinetobacter baumannii (28921) * Acinetobacter baumannii ATCC 17978 (17477) * Acinetobacter baumannii Oct. 2012 (aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) * Acinetobacter sp. ADP1 (acinSp_ADP1) * Actinidia chinensis FEI Lab v1.0 * Actinobacillus pleuropneumoniae L20 (actiPleu_L20) * Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135) * Actinobacillus succinogenes 130Z (13370) * Adelie penguin Jun 2014 (ASM69910v1/pygAde1) (pygAde1) * Aeromonas hydrophila subsp. hydrophila ATCC 7966 (aeroHydr_ATCC7966) * Aeromonas salmonicida subsp. salmonicida A449 (16723) * Aeropyrum pernix K1 (aerPer1) * African Clawed Frog (xenLae9.2) * African clawed frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) * Afrotheria Apr. 24. 2006 (UCSC Recon/afrOth13) (afrOth13) * Agrobacterium tumefaciens str. C58 (283) * Alcanivorax borkumensis SK2 (alcaBork_SK2) * Alkalilimnicola ehrlichei MLHE-1 (alkaEhrl_MLHE_1) * Alkaliphilus metalliredigens QYMF (13006) * Alkaliphilus oremlandii OhILAs (16083) * Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) * Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) * Amazon molly 28 Oct-2013 (Poecilia_formosa-5.1.2/poeFor1) (poeFor1) * Amborella trichopoda Amborella V1.0 * Amborella trichopoda JGI v1.0 * American alligator Aug. 2012 (allMis0.2/allMis1) (allMis1) * American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0) (allMis0) * American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) * American flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) * Amur tiger 06 Sep 2013 (PanTig1.0/panTig1) (panTig1) * Anabaena variabilis ATCC 29413 (anabVari_ATCC29413) * Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C) * Anaeromyxobacter sp. Fw109-5 (17729) * Ananas comosus JGI v3.0 * Anaplasma marginale str. St. Maries (anapMarg_ST_MARIES) * Anaplasma phagocytophilum HZ (336) * Anna's hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) * Apostasia shenzhenica v1.0 * Aquifex aeolicus VF5 (aquiAeol) * Arabidopsis lyrata (Araly1) * Arabidopsis lyrata JGI v1.0 * Arabidopsis lyrata JGI v2.1 * Arabidopsis thaliana * Arabidopsis thaliana COL-0 Araport11 * Arabidopsis thaliana COL-0 TAIR10 * Arabidopsis thaliana TAIR10 (Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) * Arabidopsis thaliana TAIR7 (araTha1) * Arabidopsis thaliana TAIR8 (arabidopsis_tair8) * Arabidopsis thaliana TAIR9 (arabidopsis) * Arachis ipaensis Peanut Base v1.0 * Archaeoglobus fulgidus DSM 4304 (archFulg1) * Arcobacter butzleri RM4018 (16319) * Arctic lamprey Sep 2013 (LetJap1.0/letCam1) (letCam1) * Armadillo Dec. 2011 (Baylor/dasNov3) (dasNov3) * Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) * Armadillo May 2005 (Broad/dasNov1) (dasNov1) * Arthrobacter aurescens TC1 (12512) * Arthrobacter sp. FB24 (arthFB24) * Asparagus officinalis v1.1 * Aster yellows witches'-broom phytoplasma AYWB (13478) * Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) (gadMor1) * Azoarcus sp. BH72 (13217) * Azoarcus sp. EbN1 (azoaSp_EBN1) * Azorhizobium caulinodans ORS 571 (azorCaul2) * B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1) * Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) * Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) (papAnu2) * Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1) * Bacillus amyloliquefaciens FZB42 (13403) * Bacillus anthracis str. 'Ames Ancestor' (10784) * Bacillus anthracis str. Ames (baciAnth_AMES) * Bacillus anthracis str. Sterne (10878) * Bacillus cereus ATCC 10987 (74) * Bacillus cereus ATCC 14579 (384) * Bacillus cereus E33L (12468) * Bacillus cereus subsp. cytotoxis NVH 391-98 (13624) * Bacillus clausii KSM-K16 (13291) * Bacillus halodurans C-125 (baciHalo) * Bacillus licheniformis ATCC 14580 (12388) * Bacillus licheniformis ATCC 14580 (13082) * Bacillus pumilus SAFR-032 (20391) * Bacillus subtilis subsp. subtilis str. 168 (baciSubt) * Bacillus thuringiensis serovar konkukian str. 97-27 (10877) * Bacillus thuringiensis str. Al Hakam (18255) * Bacillus weihenstephanensis KBAB4 (13623) * Bacteroides fragilis NCTC 9343 (46) * Bacteroides fragilis YCH46 (13067) * Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) * Bacteroides vulgatus ATCC 8482 (13378) * Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) * Bald eagle Aug 2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) * Bar tailed trogon 16 Jun 2014 (ASM70340v1/apaVit1) (apaVit1) * Barn owl May 2014 (ASM68720v1/tytAlb1) (tytAlb1) * Bartonella bacilliformis KC583 (16249) * Bartonella henselae str. Houston-1 (bartHens_HOUSTON_1) * Bartonella quintana str. Toulouse (44) * Bartonella tribocorum CIP 105476 (28109) * Baumannia cicadellinicola str. Hc (Homalodisca coagulata) (baumCica_HOMALODISCA) * Bdellovibrio bacteriovorus HD100 (bdelBact) * Beta vulgaris RefBeet 1.1 * Beta vulgaris RefBeet v1.2 * Bicolor damselfish May 2014 (Stegastes_partitus-1.0.2/stePar1) (stePar1) * Bifidobacterium adolescentis ATCC 15703 (16321) * Bifidobacterium longum NCC2705 (bifiLong) * Big brown bat Jul 2012 (EptFus1.0/eptFus1) (eptFus1) * Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1) * Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) * Black rockcod Jul 2014 (NC01/notCor1) (notCor1) * Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2) * Bonobo May 2012 (Max-Planck/panPan1) (panPan1) * Bonobo May 2020 (Mhudiblu_PPA_v0/panPan3) (panPan3) * Bordetella bronchiseptica RB50 (bordBron) * Bordetella parapertussis 12822 (25) * Bordetella pertussis Tohama I (26) * Bordetella petrii DSM 12804 (28135) * Boreoeutherian Apr. 24. 2006 (UCSC Recon/borEut13) (borEut13) * Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12) (canHg12) * Borrelia afzelii PKo (17057) * Borrelia burgdorferi B31 (borrBurg) * Borrelia garinii PBi (12554) * Brachypodium distachyon JGI v3.1 * Brachypodium distachyon MIPS 1.2 * Bradyrhizobium japonicum USDA 110 (bradJapo) * Bradyrhizobium sp. BTAi1 (16137) * Bradyrhizobium sp. ORS278 (19575) * Brandt's myotis (bat) 28 Jun 2013 (ASM41265v1/myoBra1) (myoBra1) * Braney test Jul. 2013 (braNey1/braNey1) (braNey1) * Brassica oleracea Ensembl Genomes v2.1 * Brassica rapa Annotation v1.2 on assembly v1.1 (Phytozome 9.1) * Brassica rapa JGI FPsc1.3 * Brown kiwi Jun. 2015 (MPI-EVA AptMant0/aptMan1) (aptMan1) * Brown roatelo Jun 2014 (ASM69576v1/mesUni1) (mesUni1) * Brucella abortus biovar 1 str. 9-941 (9619) * Brucella canis ATCC 23365 (20243) * Brucella melitensis 16M (brucMeli) * Brucella melitensis biovar Abortus 2308 (16203) * Brucella ovis ATCC 25840 (12514) * Brucella suis 1330 (320) * Brucella suis ATCC 23445 (20371) * Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1) * Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) * Buchnera aphidicola str. Bp (Baizongia pistaciae) (256) * Buchnera aphidicola str. Cc (Cinara cedri) (16372) * Buchnera aphidicola str. Sg (Schizaphis graminum) (312) * Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) (melUnd1) * Bundibugyo ebolavirus Aug. 2014 (NC_014373.1/bunEbo1) (bunEbo1) * Burkholderia ambifaria AMMD (burkCepa_AMMD) * Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) * Burkholderia cenocepacia HI2424 (burkCeno_HI2424) * Burkholderia cenocepacia MC0-3 (17929) * Burkholderia mallei ATCC 23344 (burkMall_ATCC23344) * Burkholderia mallei NCTC 10229 (13943) * Burkholderia mallei NCTC 10247 (13946) * Burkholderia mallei SAVP1 (13947) * Burkholderia multivorans ATCC 17616 (17407) * Burkholderia pseudomallei 1106a (burkPseu_1106A) * Burkholderia pseudomallei 1710b (13954) * Burkholderia pseudomallei 668 (13953) * Burkholderia pseudomallei K96243 (178) * Burkholderia sp. 383 (burk383) * Burkholderia thailandensis E264 (burkThai_E264) * Burkholderia vietnamiensis G4 (burkViet_G4) * Burkholderia xenovorans LB400 (burkXeno_LB400) * Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1) * Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) * Bushbaby Dec. 2006 (Broad/otoGar1) (otoGar1) * Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) * C. angaria Oct. 2010 (WS225/caeAng1) (caeAng1) * C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2) * C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) * C. brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) * C. briggsae Apr. 2011 (WS225/cb4) (cb4) * C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) * C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3) * C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1) * C. elegans Aug. 2007 (WS180/ce5) (ce5) * C. elegans Feb 2009 (WS200/ce7) (ce7) * C. elegans Jan 2010 (WS210/ce9) (ce9) * C. elegans Jan. 2007 (WS170/ce4) (ce4) * C. elegans Jun 2009 (WS204/ce8) (ce8) * C. elegans Mar. 2004 (WS120/ce2) (ce2) * C. elegans March 2005 (WS140/ce3) (ce3) * C. intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) * C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1) * C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) * C. japonica Sep. 2010 (WUGSC 7.0.1/caeJap3) (caeJap3) * C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4) (caeJap4) * C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) * C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1) * C. remanei Jul. 2007 (WS220/caeRem4) (caeRem4) * C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) * C. remanei March 2005 (WUGSC prelim/caeRem1) (caeRem1) * C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3) * C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) * C. savignyi July 2005 (Sidow Lab 2.0/cioSav2) (cioSav2) * C. sp. 11 ju1373 Nov. 2010 (WUSTL 3.0.1/caeSp111) (caeSp111) * C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71) (caeSp71) * C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) * Cactus Nov. 2010 (CactusV3/cacTus3) (cacTus3) * Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2) * Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) * Caenorhabditis elegans Feb. 2013 (WBcel235/ce11) * Caenorhabditis elegans: ce10 * Caenorhabditis elegans: ce6 * Cajanus cajan Penguin Genomics v5.0 * Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) * Caldivirga maquilingensis IC-167 (caldMaqu1) * Campylobacter concisus 13826 (17159) * Campylobacter curvus 525.92 (17161) * Campylobacter fetus subsp. fetus 82-40 (campFetu_82_40) * Campylobacter hominis ATCC BAA-381 (20083) * Campylobacter jejuni RM1221 (campJeju_RM1221) * Campylobacter jejuni subsp. doylei 269.97 (17163) * Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) * Campylobacter jejuni subsp. jejuni 81116 (17953) * Campylobacter jejuni subsp. jejuni NCTC 11168 (campJeju) * Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) * Candidatus Blochmannia floridanus (blocFlor) * Candidatus Blochmannia pennsylvanicus str. BPEN (13875) * Candidatus Carsonella ruddii PV (candCars_RUDDII) * Candidatus Desulforudis audaxviator MP104C (21047) * Candidatus Korarchaeum cryptofilum OPF8 (16525) * Candidatus Methanoregula boonei 6A8 (methBoon1) * Candidatus Pelagibacter ubique HTCC1062 (candPela_UBIQUE_HTCC1) * Candidatus Protochlamydia amoebophila UWE25 (paraSp_UWE25) * Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) (16841) * Candidatus Sulcia muelleri GWSS (19617) * Candidatus Vesicomyosocius okutanii HA (18267) * Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1) * Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) * Capsella rubella JGI annotation v1.0 on assembly v1 * Capsella rubella JGI v1.0 * Capsicum annuum Pepper Genome v2.0 * Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) * Carica papaya Hawaii Agriculture Research Center * Carica papaya JGI ASGPB0.4 * Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) (felCat4) * Cat Mar. 2006 (Broad/felCat3) (felCat3) * Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) * Cat Nov. 2017 (Felis catus, domestic cat): felCat9 * Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) (felCat5) * Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1) * Caulobacter crescentus CB15 (caulCres) * Caulobacter sp. K31 (16306) * Cenchrus americanus v1.0 * CentromereY 2013 GrCh38 (centromeres1) * Chenopodium quinoa JGI v1.0 * Chicken (Gallus gallus): galGal6 * Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) * Chicken Feb. 2004 (WUGSC 1.0/galGal2) (galGal2) * Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) * Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4) * Chicken Oct. 2021 (bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) * Chimp Feb. 2011 (CSAC 2.1.4/panTro4) (panTro4) * Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6) * Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) * Chimp May 2016 (Pan_tro 3.0/panTro5) (panTro5) * Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) * Chimp Oct. 2010 (CGSC 2.1.3/panTro3) (panTro3) * Chinchilla May 2012 (ChiLan1.0/chiLan1) (chiLan1) * Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) * Chinese hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) * Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) * Chinese hamster Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) * Chinese pangolin Aug 2014 (M_pentadactyla-1.1.1/manPen1) (manPen1) * Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) (pelSin1) * Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1) (tupChi1) * Chlamydia muridarum Nigg (229) * Chlamydia trachomatis 434/Bu (28583) * Chlamydia trachomatis A/HAR-13 (13885) * Chlamydia trachomatis D/UW-3/CX (chlaTrac) * Chlamydia trachomatis L2b/UCH-1/proctitis (28585) * Chlamydomonas reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6 * Chlamydomonas reinhardtii JGI v5.5 * Chlamydophila abortus S26/3 (355) * Chlamydophila caviae GPIC (228) * Chlamydophila felis Fe/C-56 (370) * Chlamydophila pneumoniae AR39 (247) * Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029) * Chlamydophila pneumoniae J138 (257) * Chlamydophila pneumoniae TW-183 (420) * Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) * Chlorobium phaeobacteroides DSM 266 (12609) * Chlorobium tepidum TLS (chloTepi_TLS) * Chloroflexus aurantiacus J-10-fl (59) * Chromobacterium violaceum ATCC 12472 (chroViol) * Chromohalobacter salexigens DSM 3043 (chroSale_DSM3043) * Chuck-will's-widow Jun 2014 (ASM70074v1/capCar1) (capCar1) * Cicer arietinum LIS v1.0 * Citrobacter koseri ATCC BAA-895 (12716) * Citrullus lanatus Cucurbit Genomics Database * Citrullus lanatus Cucurbit Genomics Database v1.0 * Citrus clementina JGI v1.0 * Citrus sinensis JGI v1 assembly and v1.0 annotation * Clavibacter michiganensis subsp. michiganensis NCPPB 382 (clavMich_NCPPB_382) * Clavibacter michiganensis subsp. sepedonicus (184) * Clostridium acetobutylicum ATCC 824 (77) * Clostridium beijerinckii NCIMB 8052 (12637) * Clostridium botulinum A str. ATCC 19397 (19517) * Clostridium botulinum A str. ATCC 3502 (193) * Clostridium botulinum A str. Hall (19521) * Clostridium botulinum A3 str. Loch Maree (28507) * Clostridium botulinum B1 str. Okra (28505) * Clostridium botulinum F str. Langeland (19519) * Clostridium difficile 630 (78) * Clostridium kluyveri DSM 555 (19065) * Clostridium novyi NT (16820) * Clostridium perfringens ATCC 13124 (304) * Clostridium perfringens SM101 (12521) * Clostridium perfringens str. 13 (79) * Clostridium phytofermentans ISDg (16184) * Clostridium tetani E88 (81) * Clostridium thermocellum ATCC 27405 (314) * Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) * Coffea canephora Coffee Genome Hub v1 * Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) * Colwellia psychrerythraea 34H (colwPsyc_34H) * Common cuckoo Jun 2014 (ASM70932v1/cucCan1) (cucCan1) * Corchorus olitorius GenBank v1.0 * Corynebacterium diphtheriae NCTC 13129 (87) * Corynebacterium efficiens YS-314 (coryEffi_YS_314) * Corynebacterium glutamicum ATCC 13032 (13760) * Corynebacterium glutamicum ATCC 13032 (307) * Corynebacterium glutamicum R (19193) * Corynebacterium jeikeium K411 (13967) * Cow Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) * Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) * Cow Aug. 2009 (UMD3.1) (bosTauMd3) * Cow Mar. 2005 (Baylor 2.0/bosTau2) (bosTau2) * Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) (bosTau6) * Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) * Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) (bosTau7) * Coxiella burnetii Dugway 5J108-111 (16721) * Coxiella burnetii RSA 331 (16791) * Coxiella burnetii RSA 493 (coxiBurn) * Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) * Crowned crain Jun 2014 (ASM70989v1/balPav1) (balPav1) * Cuckoo roller May 2014 (ASM69178v1/lepDis1) (lepDis1) * Cucumis melo Melonomics v3.5 * Cucumis sativus L. JGI v1.0 * Cytophaga hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) * D. albomicans 21 May 2012 (DroAlb_1.0/droAlb1) (droAlb1) * D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2) * D. ananassae Feb. 2006 (droAna3) * D. ananassae July 2004 (TIGR/droAna1) (droAna1) * D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) * D. bipectinata 04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) * D. elegans 04 Mar 2013 (Dele_2.0/droEle2) (droEle2) * D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1) * D. erecta Feb. 2006 (droEre2) * D. eugracilis 04 Mar 2013 (Deug_2.0/droEug2) (droEug2) * D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2) (droFic2) * D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) * D. grimshawi Feb. 2006 (droGri2) * D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2) (droKik2) * D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) * D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3) * D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (dm6) * D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) * D. miranda 19 Apr 2013 (DroMir_2.2/droMir2) (droMir2) * D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1) * D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2) * D. mojavensis Feb. 2006 (droMoj3) * D. persimilis Oct. 2005 (Broad/droPer1) (droPer1) * D. pseudoobscura (dp4) (dp4) * D. pseudoobscura 11 Apr 2013 (Dpse_3.0/droPse3) (droPse3) * D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2) * D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) * D. rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) * D. sechellia Oct. 2005 (Broad/droSec1) (droSec1) * D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1) * D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) * D. takahashii 04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) * D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2) * D. virilis Feb. 2006 (droVir3) * D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1) * D. willistoni 03 Aug 2006 (dwil_caf1/droWil2) (droWil2) * D. willistoni Feb. 2006 (droWil1) * D. yakuba 27 Jun 2006 (dyak_caf1/droYak3) (droYak3) * D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1) * D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) * Dalmatian pelican May 2014 (ASM68737v1/pelCri1) (pelCri1) * Daucus carota JGI v2.0 * David's myotis (bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) * Dechloromonas aromatica RCB (dechArom_RCB) * Deer Tick (Ixodes scapularis) (IscaW1) * Dehalococcoides ethenogenes 195 (dehaEthe_195) * Dehalococcoides sp. BAV1 (15770) * Dehalococcoides sp. CBDB1 (15604) * Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300) * Deinococcus radiodurans R1 (deinRadi) * Delftia acidovorans SPH-1 (17413) * Desulfitobacterium hafniense Y51 (desuHafn_Y51) * Desulfococcus oleovorans Hxd3 (18007) * Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) * Desulfotomaculum reducens MI-1 (desuRedu_MI_1) * Desulfovibrio desulfuricans G20 (329) * Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) * Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) * Dichelobacter nodosus VCS1703A (dichNodo_VCS1703A) * Dinoroseobacter shibae DFL 12 (17417) * Dog July 2004 (Broad/canFam1) (canFam1) * Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) * Dog May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) * Dog May 2005 (Broad/canFam2) (canFam2) * Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) * Dog Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) * Dolphin Feb. 2008 (Broad/turTru1) (turTru1) * Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2) * Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) * Downy woodpecker Jun 2014 (ASM69900v1/picPub1) (picPub1) * Ebola virus 49 sequences: 5 Ebola, 2 Marburg strains (eboVir2) * Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1) * Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) * Ecoref Feb. 2013 (ecoRef3/ecoRef3) (ecoRef3) * Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4) * Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) * Ecoref Jan. 2013 (ecoRef2/ecoRef2) (ecoRef2) * Ehrlichia canis str. Jake (10694) * Ehrlichia chaffeensis str. Arkansas (325) * Ehrlichia ruminantium str. Gardel (13356) * Ehrlichia ruminantium str. Welgevonden (13355) * Ehrlichia ruminantium str. Welgevonden (ehrlRumi_WELGEVONDEN) * Elaeis guineensis EG5.1 * Elaeis guineensis NCBI Genome v1.0 * Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) * Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3) * Elephant May 2005 (Broad/loxAfr1) (loxAfr1) * Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) * Emperor penguin 06 Jun 2014 (ASM69914v1/aptFor1) (aptFor1) * Enterobacter sakazakii ATCC BAA-894 (12720) * Enterobacter sp. 638 (ente638) * Enterococcus faecalis V583 (enteFaec_V583) * Erythranthe guttata JGI v2.0 * Erythrobacter litoralis HTCC2594 (erytLito_HTCC2594) * Escherichia coli 536 (16235) * Escherichia coli APEC O1 (eschColi_APEC_O1) * Escherichia coli C str. ATCC 8739 (18083) * Escherichia coli CFT073 (eschColi_CFT073) * Escherichia coli DH10B (20079) * Escherichia coli E24377A (13960) * Escherichia coli EC4115 (eschColi_EC4115) * Escherichia coli HS (13959) * Escherichia coli K12 (eschColi_K12) * Escherichia coli O157:H7 EDL933 (259) * Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) * Escherichia coli SECEC SMS-3-5 (19469) * Escherichia coli TW14359 (eschColi_TW14359) * Escherichia coli UTI89 (16259) * Escherichia coli W3110 (16351) * Euarchontoglires Apr. 24. 2006 (UCSC Recon/euaGli13) (euaGli13) * Eucalyptus grandis JGI assembly v1.0, annotation v1.1 * Eucalyptus grandis JGI v2.0 * European sea bass Apr 2014 (seabass_V1.0/dicLab1) (dicLab1) * Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13) (eutHer13) * Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) * Ferret Apr. 2011 (MusPutFur1.0/musFur1) (musFur1) * Fervidobacterium nodosum Rt17-B1 (16719) * Finegoldia magna ATCC 29328 (18981) * Fission Yeast (S. pombe) (Schizosaccharomyces_pombe_1.1) * Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1) (sebRub1) * Flavobacterium johnsoniae UW101 (flavJohn_UW101) * Flavobacterium psychrophilum JIP02/86 (19979) * Foshan strain genomic contigs sequences, AaloF1 assembly. * Fragaria vesca JGI v1.1 * Fragaria vesca Strawberry Genome 1.0 * Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) * Francisella tularensis subsp. holarctica (16421) * Francisella tularensis subsp. holarctica FTA (20197) * Francisella tularensis subsp. holarctica OSU18 (17265) * Francisella tularensis subsp. novicida U112 (16088) * Francisella tularensis subsp. tularensis FSC198 (17375) * Francisella tularensis subsp. tularensis SCHU S4 (franTula_TULARENSIS) * Francisella tularensis subsp. tularensis WY96-3418 (18459) * Frankia alni ACN14a (17403) * Frankia sp. CcI3 (franCcI3) * Frankia sp. EAN1pec (13915) * Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) * Fugu Oct. 2004 (JGI 4.0/fr2) (fr2) * Fugu Oct. 2011 (FUGU5/fr3) (fr3) * Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (fusoNucl) * GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2) * GRCh38.p2 Dec 2014 (hg38Patch2) * Garter snake Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) * Geobacillus kaustophilus HTA426 (geobKaus_HTA426) * Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2) * Geobacter metallireducens GS-15 (geobMeta_GS15) * Geobacter sulfurreducens PCA (geobSulf) * Geobacter uraniireducens Rf4 (geobUran_RF4) * Gharial APR 2009 (preliminary/gavGan0) (gavGan0) * Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) (nomLeu1) * Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) * Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) (nomLeu3) * Glires Apr. 24. 2006 (UCSC Recon/gliRes13) (gliRes13) * Gloeobacter violaceus PCC 7421 (gloeViol) * Gluconacetobacter diazotrophicus PAl 5 (377) * Gluconobacter oxydans 621H (glucOxyd_621H) * Glycine max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly * Glycine max JGI Wm82.a2.v1 * Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1) * Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) * Golden hamster Mar 2013 (MesAur1.0/mesAur1) (mesAur1) * Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) (rhiRox1) * Golden-collared manakin May 2014 (ASM69201v1/manVit1) (manVit1) * Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2) * Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) * Gorilla Dec 2014 (gorGor4.1/gorGor4) (gorGor4) * Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5) * Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) * Gorilla Oct. 2008 (Sanger 0.1/gorGor1) (gorGor1) * Gossypium raimondii JGI annotation v2.1 on assembly v2.0 * Gossypium raimondii JGI v2.1 * Gramella forsetii KT0803 (gramFors_KT0803) * Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) * Grch37.p10 Sep. 2012 (GRCh37.p10/hg19Patch10) (hg19Patch10) * Grch37.p5 Jun. 2011 (GRCh37.p5/hg19Patch5) (hg19Patch5) * Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9) (hg19Patch9) * Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) * Great cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) * Greater horseshoe bat Sep. 2013 (ASM46549v1/rhiFer1) (rhiFer1) * Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) (chlSab2) * Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1) * Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) * Guppy Apr. 2014 (Guppy_female_1.0/poeRet1) (poeRet1) * H. contortus Dec. 2009 (WormBase WS210/haeCon1) (haeCon1) * Haemophilus ducreyi 35000HP (38) * Haemophilus influenzae 86-028NP (11752) * Haemophilus influenzae PittEE (16400) * Haemophilus influenzae PittGG (16401) * Haemophilus influenzae Rd KW20 (haemInfl_KW20) * Haemophilus somnus 129PT (haemSomn_129PT) * Haemophilus somnus 2336 (388) * Hahella chejuensis KCTC 2396 (haheChej_KCTC_2396) * Haloarcula marismortui ATCC 43049 (halMar1) * Halobacterium salinarum R1 (106) * Halobacterium sp. NRC-1 (haloHalo1) * Haloquadratum walsbyi DSM 16790 (haloWals1) * Halorhodospira halophila SL1 (haloHalo_SL1) * Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) * Head Louse (Pediculus humanus) (PhumU1) * Hedgehog June 2006 (Broad/eriEur1) (eriEur1) * Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) * Helicobacter acinonychis str. Sheeba (heliAcin_SHEEBA) * Helicobacter hepaticus ATCC 51449 (heliHepa) * Helicobacter pylori 26695 (heliPylo_26695) * Helicobacter pylori HPAG1 (heliPylo_HPAG1) * Helicobacter pylori J99 (heliPylo_J99) * Heliobacterium modesticaldum Ice1 (13427) * Herminiimonas arsenicoxydans (hermArse) * Herpetosiphon aurantiacus ATCC 23779 (16523) * Hevea brasiliensis NCBI Genomes v1 * Hg19 lgg inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) * Hlaref Apr. 2012 (hlaRefV1/hlaRef1) (hlaRef1) * Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2) * Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) * Hoatzin May 2014 (ASM69207v1/opiHoa1) (opiHoa1) * Hominidae Apr. 24. 2006 (UCSC Recon/homIni13) (homIni13) * Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) * Homo Sapiens (GRCh38) Transcriptome + ERCC * Homo sapiens (hg19 with mtDNA replaced with rCRS) (Homo_sapiens_nuHg19_mtrCRS) * Homo sapiens b37 (hg_g1k_v37) * Homo sapiens hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) * Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1) (corCor1) * Hordeum vulgare Ensembl Genomes ASM32608v1 * Hordeum vulgare IBC PGSB v2 * Hordeum vulgare MIPS * Horse Jan. 2007 (Broad/equCab1) (equCab1) * Horse Jan. 2018 (EquCab3.0/equCab3) * Horse Sep. 2007 (Broad/equCab2) (equCab2) * Houbara bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) * Human (Homo sapiens): hg19 Full * Human Apr. 2003 (NCBI33/hg15) (hg15) * Human CHM13 2.0 (T2T Consortium) Jan. 2022 * Human Dec. 2013 (GRCh38/hg38) (hg38) * Human Jan. 2021 isolate CHM13 (T2T Consortium) female * Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) * Human July 2003 (NCBI34/hg16) (hg16) * Human Mar. 2006 (NCBI36/hg18) (hg18) * Human May 2004 (NCBI35/hg17) (hg17) * Human herpesvirus 1 (15217) * Human repeats Nov. 2012 (1/repeats2) (repeats2) * Hydra magnipapillata str. 105 (Hydra_JCVI) * Hyperthermus butylicus DSM 5456 (hypeButy1) * Hyphomonas neptunium ATCC 15444 (hyphNept_ATCC15444) * Idiomarina loihiensis L2TR (idioLoih_L2TR) * Ignicoccus hospitalis KIN4/I (13914) * Indian false vampire Sep. 2013 (ASM46534v1/megLyr1) (megLyr1) * Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) * J. Craig Venter Sep. 2007 (HuRef/venter1) (venter1) * Jannaschia sp. CCS1 (jannCCS1) * Janthinobacterium sp. Marseille (16549) * Japanese eel 18 Mar-2014 (japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1) (angJap1) * Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) * Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1) * Killdeer Aug 2014 (ASM70802v2/chaVoc2) (chaVoc2) * Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) * Killer whale Jan 2013 (Oorc_1.1/orcOrc1) (orcOrc1) * Kineococcus radiotolerans SRS30216 (10689) * Kirref Apr. 2011 (kirRef/kirRef) (kirRef) * Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2) (kirRefV2) * Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) * Kirrefv4 Apr. 2011 (kirRefV4/kirRefV4) (kirRefV4) * Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5) * Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) * Korean Man (Homo_sapiens_AK1) * Lactobacillus acidophilus NCFM (82) * Lactobacillus brevis ATCC 367 (404) * Lactobacillus casei ATCC 334 (402) * Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (16871) * Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (403) * Lactobacillus gasseri ATCC 33323 (84) * Lactobacillus helveticus DPC 4571 (17811) * Lactobacillus johnsonii NCC 533 (9638) * Lactobacillus plantarum WCFS1 (lactPlan) * Lactobacillus reuteri F275 (15766) * Lactobacillus sakei subsp. sakei 23K (13435) * Lactobacillus salivarius UCC118 (lactSali_UCC118) * Lactococcus lactis subsp. cremoris MG1363 (18797) * Lactococcus lactis subsp. cremoris SK11 (401) * Lactococcus lactis subsp. lactis Il1403 (lactLact) * Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) (petMar3) * Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1) * Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) * Lancelet Apr. 2008 (JGI v2.0/braFlo2) (braFlo2) * Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1) * Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) * Lawsonia intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) * Legionella pneumophila str. Corby (17491) * Legionella pneumophila str. Lens (13126) * Legionella pneumophila str. Paris (13127) * Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (legiPneu_PHILADELPHIA) * Leifsonia xyli subsp. xyli str. CTCB07 (leifXyli_XYLI_CTCB0) * Leishmania major 2005 (lMaj5) * Leptospira borgpetersenii serovar Hardjo-bovis JB197 (16148) * Leptospira borgpetersenii serovar Hardjo-bovis L550 (16146) * Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (10687) * Leptospira interrogans serovar Lai str. 56601 (leptInte) * Leptothrix cholodnii SP-6 (20039) * Lesser Egyptian jerboa May 2012 (JacJac1.0/jacJac1) (jacJac1) * Leuconostoc citreum KM20 (16062) * Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) * Limpet Jul. 2013 (lotGig0/lotGig0) (lotGig0) * Listeria innocua Clip11262 (listInno) * Listeria monocytogenes EGD-e (276) * Listeria monocytogenes str. 4b F2365 (85) * Listeria welshimeri serovar 6b str. SLCC5334 (13443) * Little egret May 2014 (ASM68718v1/egrGar1) (egrGar1) * Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) * Lizard May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) * Lotus japonicus Kazusa 2.5 * Lysinibacillus sphaericus C3-41 (19619) * M. domestica 22 Apr 2013 (Musca_domestica-2.0.2/musDom2) (musDom2) * M. hapla Sep. 2008 (M. hapla VW9 WS210/melHap1) (melHap1) * M. incognita Feb. 2008 (M. incognita WS210/melInc1) (melInc1) * MMTV Nov. 2009 (MMTV/mmtv) (mmtv) * Macaca fascicularis Jun 2013 (macFas5) * Magnetococcus sp. MC-1 (magnMC1) * Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) * Maize (Zea mays) (Zea_mays_B73_RefGen_v2) * Malayan flying lemur Jun. 2014 (G_variegatus-3.0.2/galVar1) (galVar1) * Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) (anaPla1) * Malus domestica IASMA * Malus domestica Penguin Genomics v2 * Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) * Manihot esculenta Cassava4 * Manihot esculenta JGI v6.1 * Mannheimia succiniciproducens MBEL55E (mannSucc_MBEL55E) * Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1) * Marchantia polymorpha JGI v3.1 * Maricaulis maris MCS10 (mariMari_MCS10) * Marinobacter aquaeolei VT8 (mariAqua_VT8) * Marinomonas sp. MWYL1 (17445) * Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1) * Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3) * Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4) (calJac4) * Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) * Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2) * Medicago truncatula JCVI 4.0 * Medicago truncatula JGI Mt4.0v1 * Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) (geoFor1) * Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) * Mesoplasma florum L1 (mesoFlor_L1) * Mesorhizobium loti MAFF303099 (mesoLoti) * Mesorhizobium sp. BNC1 (10690) * Metallosphaera sedula DSM 5348 (metaSedu) * Methanobrevibacter smithii ATCC 35061 (methSmit1) * Methanocaldococcus jannaschii DSM 2661 (methJann1) * Methanococcoides burtonii DSM 6242 (methBurt2) * Methanococcus aeolicus Nankai-3 (methAeol1) * Methanococcus maripaludis C5 (methMari_C5_1) * Methanococcus maripaludis C6 (19639) * Methanococcus maripaludis C7 (methMari_C7) * Methanococcus maripaludis S2 (metMar1) * Methanococcus vannielii SB (methVann1) * Methanocorpusculum labreanum Z (methLabrZ_1) * Methanoculleus marisnigri JR1 (mculMari1) * Methanopyrus kandleri AV19 (methKand1) * Methanosaeta thermophila PT (methTherPT1) * Methanosarcina acetivorans C2A (metAce1) * Methanosarcina barkeri str. Fusaro (methBark1) * Methanosarcina mazei Go1 (methMaze1) * Methanosphaera stadtmanae DSM 3091 (methStad1) * Methanospirillum hungatei JF-1 (methHung1) * Methanothermobacter thermautotrophicus str. Delta H (methTher1) * Methylibium petroleiphilum PM1 (methPetr_PM1) * Methylobacillus flagellatus KT (methFlag_KT) * Methylobacterium extorquens PA1 (18637) * Methylobacterium radiotolerans JCM 2831 (18817) * Methylobacterium sp. 4-46 (18809) * Methylococcus capsulatus str. Bath (methCaps_BATH) * Mexican tetra (cavefish) Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) (astMex1) * Mhcref Apr. 2011 (mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) * Mhcref Jan. 2011 (mhcRefV1/mhcRef) (mhcRef) * Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) * Mhcref July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) * Mhcref July 2011 (mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) * Mhcref July 2011 (mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) * Mhcref July 2011 (mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) * Mhcref July 2011 (mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) * Mhcref July 2011 (mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) * Mhcref July 2011 (mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) * Mhcref July 2011 (mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) * Mhcref July 2011 (mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) * Mhcref July 2011 (mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) * Mhcref June 2011 (mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) * Mhcref June 2011 (mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) * Mhcref June 2011 (mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) * Mhcref Mar. 2012 (mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) * Mhcref Mar. 2012 (mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) * Mhcref Mar. 2012 (mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) * Mhcref Oct. 2011 (mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) * Mhcref Oct. 2011 (mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) * Mhcref Oct. 2011 (mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) * Mhcref Oct. 2011 (mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) * Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) (myoLuc2) * Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1) * Microcystis aeruginosa NIES-843 (27835) * Micromonas commoda JGI v3.0 * Minke whale Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) * Mm10haps Dec. 2011 (Mouse strains/mm10Strains1) (mm10Strains1) * Monkeypox virus MPXV-M5312_HM12_Rivers (MT903340.1/GCF_014621545.1) (mpxvRivers) * Moorella thermoacetica ATCC 39073 (moorTher_ATCC39073) * Mosquito (Aedes aegypti) (AaegL1) * Mosquito (Anopheles gambiae) (AgamP3) * Mosquito (Culex quinquefasciatus) (CpipJ1) * Mouse (Mus Musculus): mm10 Full * Mouse (Mus Musculus): mm39 Full * Mouse Aug. 2005 (NCBI35/mm7) (mm7) * Mouse Feb. 2006 (NCBI36/mm8) (mm8) * Mouse July 2007 (NCBI37/mm9) (mm9) * Mouse May 2004 (mm5) * Mouse lemur Jul. 2007 (Broad/micMur1) (micMur1) * Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) * Musa acuminata Banana Genome v1.0 * Musa acuminata Banana Genome v2.0 * Musa acuminata Genescope-Cirad * Mycobacterium abscessus (15691) * Mycobacterium avium 104 (88) * Mycobacterium avium subsp. paratuberculosis K-10 (91) * Mycobacterium bovis AF2122/97 (89) * Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) * Mycobacterium gilvum PYR-GCK (15760) * Mycobacterium leprae TN (90) * Mycobacterium smegmatis str. MC2 155 (92) * Mycobacterium sp. JLS (16079) * Mycobacterium sp. KMS (16081) * Mycobacterium sp. MCS (15762) * Mycobacterium tuberculosis CDC1551 (223) * Mycobacterium tuberculosis F11 (15642) * Mycobacterium tuberculosis H37Ra (18883) * Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) * Mycobacterium ulcerans Agy99 (16230) * Mycobacterium vanbaalenii PYR-1 (15761) * Mycoplasma agalactiae PG2 (16095) * Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) * Mycoplasma gallisepticum R (409) * Mycoplasma genitalium G37 (mycoGeni) * Mycoplasma hyopneumoniae 232 (13120) * Mycoplasma hyopneumoniae 7448 (10639) * Mycoplasma hyopneumoniae J (10675) * Mycoplasma mobile 163K (10697) * Mycoplasma mycoides subsp. mycoides SC str. PG1 (10616) * Mycoplasma penetrans HF-2 (176) * Mycoplasma pneumoniae M129 (99) * Mycoplasma pulmonis UAB CTIP (100) * Mycoplasma synoviae 53 (10676) * Myxococcus xanthus DK 1622 (myxoXant_DK_1622) * Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) (hetGla2) * Naked mole-rat Jul. 2011 (BGI HetGla_1.0/hetGla1) (hetGla1) * Nanoarchaeum equitans Kin4-M (nanEqu1) * Natronomonas pharaonis DSM 2160 (natrPhar1) * Neisseria gonorrhoeae FA 1090 (neisGono_FA1090_1) * Neisseria meningitidis 053442 (16393) * Neisseria meningitidis FAM18 (neisMeni_FAM18_1) * Neisseria meningitidis MC58 (neisMeni_MC58_1) * Neisseria meningitidis Z2491 (neisMeni_Z2491_1) * Nelumbo nucifera LOTUS-DB v1.1 * Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) * Nile tilapia Jan. 2011 (Broad oreNil1.0/oreNil1) (oreNil1) * Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) (oreNil2) * Nitratiruptor sp. SB155-2 (18963) * Nitrobacter hamburgensis X14 (13473) * Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255) * Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) * Nitrosomonas europaea ATCC 19718 (nitrEuro) * Nitrosomonas eutropha C91 (13913) * Nitrosopumilus maritimus SCM1 (19265) * Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) * Nocardia farcinica IFM 10152 (nocaFarc_IFM10152) * Nocardioides sp. JS614 (nocaJS61) * Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) * Northern carmine bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) * Northern fulmar May 2014 (ASM69083v1/fulGla1) (fulGla1) * Northern pike Jul 2014 (EsoLuc1.0/esoLuc1) (esoLuc1) * Nostoc sp. PCC 7120 (nostSp) * Notyet Oct. 2011 (notYet1/calMil0) (calMil0) * Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444) * Oceanobacillus iheyensis HTE831 (oceaIhey) * Ochrobactrum anthropi ATCC 49188 (19485) * Oenococcus oeni PSU-1 (oenoOeni_PSU_1) * Oikopleura dioica (od01) * Onion yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) * Opossum Jan. 2006 (Broad/monDom4) (monDom4) * Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1) * Opossum Oct. 2006 (Broad/monDom5) (monDom5) * Orangutan Jan. 2018 (Susie_PABv2/ponAbe3) (ponAbe3) * Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2) * Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) * Oropetium thomaeum JGI v1.0 * Oryza brachyantha Ensembl Plants v1.4b * Oryza sativa ssp. indica 9311_BGF_2005 * Oryza sativa ssp. indica MBKBASE v1.0 * Oryza sativa ssp. japonica JGI v7.0 * Oryza sativa ssp. japonica MSU RGAP 7 * Ostreococcus lucimarinus JGI 2.0 * Ostreococcus lucimarinus JGI v2.0 assembly and annotation * Ostrich 06 Jun-2014 (ASM69896v1/strCam1) (strCam1) * P. falciparum Plasmodium falciparum (?/falciparum) (falciparum) * P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2) (priPac2) * P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) * Pacific walrus Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) * Painted turtle Dec. 2011 (v3.0.1/chrPic1) (chrPic1) * Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2) * Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) * Parabacteroides distasonis ATCC 8503 (13485) * Paracoccus denitrificans PD1222 (paraDeni_PD1222) * Parnell's mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) * Parrot Jan. 2013 (AV1/amaVit1) (amaVit1) * Parvibaculum lavamentivorans DS-1 (17639) * Pasteurella multocida subsp. multocida str. Pm70 (pastMult) * Pectobacterium atrosepticum SCRI1043 (erwiCaro_ATROSEPTICA) * Pediococcus pentosaceus ATCC 25745 (pediPent_ATCC25745) * Pelobacter carbinolicus DSM 2380 (peloCarb) * Pelobacter propionicus DSM 2379 (13384) * Pelodictyon luteolum DSM 273 (peloLute_DSM273) * Pelotomaculum thermopropionicum SI (peloTher_SI) * Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) (falPer1) * Petrotoga mobilis SJ95 (17679) * Petunia axillaris Sol Genomics v1.6.2 * Phalaenopsis equestris Genomics v1.0 * Photobacterium profundum SS9 (photProf_SS9) * Photorhabdus luminescens subsp. laumondii TTO1 (photLumi) * Phyllostachys edulis NCGR v1.0 * Physcomitrella patens JGI assembly release v1.1 and COSMOSS annotation v1.6 * Physcomitrella patens JGI v3.3 * Physcomitrella patens assembly version 1.2b (2014/03/27): pp1.2b * Picrophilus torridus DSM 9790 (picrTorr1) * Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) (susScr3) * Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11) * Pig May 2010 (Sscrofa9.58) * Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2) * Pika Jul. 2008 (Broad/ochPri2) (ochPri2) * Pika May 2012 (OchPri3.0/ochPri3) (ochPri3) * Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12) (plasFalc3D7V12) * Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) * Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1) * Polar bear 09 May-2014 (UrsMar_1.0/ursMar1) (ursMar1) * Polaromonas naphthalenivorans CJ2 (13418) * Polaromonas sp. JS666 (polaJS66) * Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) * Poplar (Populus trichocarpa) (Ptrichocarpa_156) * Populus trichocarpa JGI assembly release v3.0, annotation v3.0 * Populus trichocarpa JGI v3.1 * Porphyromonas gingivalis W83 (porpGing_W83) * Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1) * Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) * Primate Apr. 24. 2006 (UCSC Recon/priMat13) (priMat13) * Princess of Burundi May 2011 (NeoBri1.0/neoBri1) (neoBri1) * Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1) * Prochlorococcus marinus str. AS9601 (13548) * Prochlorococcus marinus str. MIT 9211 (13551) * Prochlorococcus marinus str. MIT 9215 (18633) * Prochlorococcus marinus str. MIT 9301 (15746) * Prochlorococcus marinus str. MIT 9303 (13496) * Prochlorococcus marinus str. MIT 9312 (13910) * Prochlorococcus marinus str. MIT 9313 (220) * Prochlorococcus marinus str. MIT 9515 (13617) * Prochlorococcus marinus str. NATL1A (15660) * Prochlorococcus marinus str. NATL2A (13911) * Prochlorococcus marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) * Prochlorococcus marinus subsp. pastoris str. CCMP1986 (213) * Propionibacterium acnes KPA171202 (propAcne_KPA171202) * Prosthecochloris vibrioformis DSM 265 (12607) * Prunus persica JGI release v1.0 * Prunus persica JGI v2.1 * Przewalski horse Jun 2014 (Burgud/equPrz1) (equPrz1) * Pseudoalteromonas atlantica T6c (13454) * Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) * Pseudomonas aeruginosa PA7 (16720) * Pseudomonas aeruginosa PAO1 (pseuAeru) * Pseudomonas aeruginosa UCBPP-PA14 (386) * Pseudomonas entomophila L48 (16800) * Pseudomonas fluorescens Pf-5 (327) * Pseudomonas fluorescens PfO-1 (12) * Pseudomonas mendocina ymp (17457) * Pseudomonas putida F1 (13909) * Pseudomonas putida GB-1 (17629) * Pseudomonas putida KT2440 (267) * Pseudomonas putida W619 (17053) * Pseudomonas stutzeri A1501 (16817) * Pseudomonas syringae pv. phaseolicola 1448A (12416) * Pseudomonas syringae pv. syringae B728a (323) * Pseudomonas syringae pv. tomato str. DC3000 (359) * Psychrobacter arcticus 273-4 (psycArct_273_4) * Psychrobacter cryohalolentis K5 (13920) * Psychrobacter sp. PRwf-1 (15759) * Psychromonas ingrahamii 37 (psycIngr_37) * Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) * Purple Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) * Pyrobaculum aerophilum str. IM2 (pyrAer1) * Pyrobaculum arsenaticum DSM 13514 (pyroArse1) * Pyrobaculum calidifontis JCM 11548 (pyroCali1) * Pyrobaculum islandicum DSM 4184 (pyroIsla1) * Pyrococcus abyssi GE5 (pyrAby1) * Pyrococcus furiosus DSM 3638 (pyrFur2) * Pyrococcus horikoshii OT3 (pyrHor1) * Pyrus bretschneideri Pear Genome Project v1.0 * Rabbit Apr. 2009 (oryCun2) * Rabbit May 2005 (Broad/oryCun1) (oryCun1) * Ralstonia eutropha H16 (13603) * Ralstonia eutropha JMP134 (ralsEutr_JMP134) * Ralstonia metallidurans CH34 (250) * Ralstonia solanacearum GMI1000 (ralsSola) * Rat (Rattus norvegicus): rn5 * Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) * Rat June 2003 (Baylor 3.1/rn3) (rn3) * Rat Nov. 2004 (Baylor 3.4/rn4) (rn4) * Rattus norvegicus Nov. 2020 (mRatBN7.2/rn7) * Red Flour Beetle (Tribolium castaneum) (Tcas_3.0) * Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1) * Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) * Red-throated loon May 2014 (ASM69087v1/gavSte1) (gavSte1) * Renibacterium salmoninarum ATCC 33209 (19227) * RepBase Jun. 2012 (hg19/repBase0) (repBase0) * RepBase Sep. 2012 (17.08/repBase1) (repBase1) * Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1) (resEbo1) * Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) * Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2) * Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7) (rheMac7) * Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) * Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) (rheMac3) * Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1) (bucRhi1) * Rhizobium etli CFN 42 (rhizEtli_CFN_42) * Rhizobium leguminosarum bv. viciae 3841 (344) * Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) * Rhodobacter sphaeroides ATCC 17025 (15755) * Rhodobacter sphaeroides ATCC 17029 (15754) * Rhodococcus sp. RHA1 (rhodRHA1) * Rhodoferax ferrireducens T118 (13908) * Rhodopirellula baltica SH 1 (pireSp) * Rhodopseudomonas palustris BisA53 (15751) * Rhodopseudomonas palustris BisB18 (15750) * Rhodopseudomonas palustris BisB5 (15749) * Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) * Rhodopseudomonas palustris HaA2 (15747) * Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170) * Rice (Oryza sativa ssp. japonica var. Nipponbare) (oryza_sativa_japonica_nipponbare_IRGSP4.0) * Ricinus communis JCVI 1.0 * Ricinus communis JGI v0.1 * Rickettsia akari str. Hartford (12953) * Rickettsia bellii OSU 85-389 (17237) * No matching references found. * List is empty. Choose local file Paste/Fetch data Start Pause Reset Close Select a composite type Composite Type: Select * Select * affybatch * analyze75 * eset * fped * fphe * ideaspre * imzml * isa-json * isa-tab * ldindep * lped * ludwig_model * malist * neostore.zip * obfs * pbed * pphe * rdata.se * shp * snpsiftdbnsfp * spalndba * spalndbnp * splib * velvet * wiff * wiff2 * No matching file types found. * List is empty. Reference: unspecified (?) * unspecified (?) * A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) * A. gambiae Oct. 2006 (AgamP3/anoGam3) (anoGam3) * A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4) (apiMel4) * A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) * A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1) * A. mellifera genome (apiMel3, Baylor HGSC Amel_3.0) * ARS1 Aug. 2016 Capra hircus (goat) (San Clemente 2016 USDA) (GCF_001704415.2) * Aardvark May 2012 (OryAfe1.0/oryAfe1) (oryAfe1) * Acaryochloris marina MBIC11017 (12997) * Acholeplasma laidlawii PG-8A (19259) * Acidiphilium cryptum JF-5 (acidCryp_JF_5) * Acidobacteria bacterium Ellin345 (acidBact_ELLIN345) * Acidothermus cellulolyticus 11B (acidCell_11B) * Acidovorax avenae subsp. citrulli AAC00-1 (15708) * Acidovorax sp. JS42 (acidJS42) * Acinetobacter baumannii (13001) * Acinetobacter baumannii (28921) * Acinetobacter baumannii ATCC 17978 (17477) * Acinetobacter baumannii Oct. 2012 (aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) * Acinetobacter sp. ADP1 (acinSp_ADP1) * Actinidia chinensis FEI Lab v1.0 * Actinobacillus pleuropneumoniae L20 (actiPleu_L20) * Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135) * Actinobacillus succinogenes 130Z (13370) * Adelie penguin Jun 2014 (ASM69910v1/pygAde1) (pygAde1) * Aeromonas hydrophila subsp. hydrophila ATCC 7966 (aeroHydr_ATCC7966) * Aeromonas salmonicida subsp. salmonicida A449 (16723) * Aeropyrum pernix K1 (aerPer1) * African Clawed Frog (xenLae9.2) * African clawed frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) * Afrotheria Apr. 24. 2006 (UCSC Recon/afrOth13) (afrOth13) * Agrobacterium tumefaciens str. C58 (283) * Alcanivorax borkumensis SK2 (alcaBork_SK2) * Alkalilimnicola ehrlichei MLHE-1 (alkaEhrl_MLHE_1) * Alkaliphilus metalliredigens QYMF (13006) * Alkaliphilus oremlandii OhILAs (16083) * Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) * Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) * Amazon molly 28 Oct-2013 (Poecilia_formosa-5.1.2/poeFor1) (poeFor1) * Amborella trichopoda Amborella V1.0 * Amborella trichopoda JGI v1.0 * American alligator Aug. 2012 (allMis0.2/allMis1) (allMis1) * American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0) (allMis0) * American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) * American flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) * Amur tiger 06 Sep 2013 (PanTig1.0/panTig1) (panTig1) * Anabaena variabilis ATCC 29413 (anabVari_ATCC29413) * Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C) * Anaeromyxobacter sp. Fw109-5 (17729) * Ananas comosus JGI v3.0 * Anaplasma marginale str. St. Maries (anapMarg_ST_MARIES) * Anaplasma phagocytophilum HZ (336) * Anna's hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) * Apostasia shenzhenica v1.0 * Aquifex aeolicus VF5 (aquiAeol) * Arabidopsis lyrata (Araly1) * Arabidopsis lyrata JGI v1.0 * Arabidopsis lyrata JGI v2.1 * Arabidopsis thaliana * Arabidopsis thaliana COL-0 Araport11 * Arabidopsis thaliana COL-0 TAIR10 * Arabidopsis thaliana TAIR10 (Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) * Arabidopsis thaliana TAIR7 (araTha1) * Arabidopsis thaliana TAIR8 (arabidopsis_tair8) * Arabidopsis thaliana TAIR9 (arabidopsis) * Arachis ipaensis Peanut Base v1.0 * Archaeoglobus fulgidus DSM 4304 (archFulg1) * Arcobacter butzleri RM4018 (16319) * Arctic lamprey Sep 2013 (LetJap1.0/letCam1) (letCam1) * Armadillo Dec. 2011 (Baylor/dasNov3) (dasNov3) * Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) * Armadillo May 2005 (Broad/dasNov1) (dasNov1) * Arthrobacter aurescens TC1 (12512) * Arthrobacter sp. FB24 (arthFB24) * Asparagus officinalis v1.1 * Aster yellows witches'-broom phytoplasma AYWB (13478) * Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) (gadMor1) * Azoarcus sp. BH72 (13217) * Azoarcus sp. EbN1 (azoaSp_EBN1) * Azorhizobium caulinodans ORS 571 (azorCaul2) * B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1) * Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) * Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) (papAnu2) * Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1) * Bacillus amyloliquefaciens FZB42 (13403) * Bacillus anthracis str. 'Ames Ancestor' (10784) * Bacillus anthracis str. Ames (baciAnth_AMES) * Bacillus anthracis str. Sterne (10878) * Bacillus cereus ATCC 10987 (74) * Bacillus cereus ATCC 14579 (384) * Bacillus cereus E33L (12468) * Bacillus cereus subsp. cytotoxis NVH 391-98 (13624) * Bacillus clausii KSM-K16 (13291) * Bacillus halodurans C-125 (baciHalo) * Bacillus licheniformis ATCC 14580 (12388) * Bacillus licheniformis ATCC 14580 (13082) * Bacillus pumilus SAFR-032 (20391) * Bacillus subtilis subsp. subtilis str. 168 (baciSubt) * Bacillus thuringiensis serovar konkukian str. 97-27 (10877) * Bacillus thuringiensis str. Al Hakam (18255) * Bacillus weihenstephanensis KBAB4 (13623) * Bacteroides fragilis NCTC 9343 (46) * Bacteroides fragilis YCH46 (13067) * Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) * Bacteroides vulgatus ATCC 8482 (13378) * Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) * Bald eagle Aug 2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) * Bar tailed trogon 16 Jun 2014 (ASM70340v1/apaVit1) (apaVit1) * Barn owl May 2014 (ASM68720v1/tytAlb1) (tytAlb1) * Bartonella bacilliformis KC583 (16249) * Bartonella henselae str. Houston-1 (bartHens_HOUSTON_1) * Bartonella quintana str. Toulouse (44) * Bartonella tribocorum CIP 105476 (28109) * Baumannia cicadellinicola str. Hc (Homalodisca coagulata) (baumCica_HOMALODISCA) * Bdellovibrio bacteriovorus HD100 (bdelBact) * Beta vulgaris RefBeet 1.1 * Beta vulgaris RefBeet v1.2 * Bicolor damselfish May 2014 (Stegastes_partitus-1.0.2/stePar1) (stePar1) * Bifidobacterium adolescentis ATCC 15703 (16321) * Bifidobacterium longum NCC2705 (bifiLong) * Big brown bat Jul 2012 (EptFus1.0/eptFus1) (eptFus1) * Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1) * Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) * Black rockcod Jul 2014 (NC01/notCor1) (notCor1) * Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2) * Bonobo May 2012 (Max-Planck/panPan1) (panPan1) * Bonobo May 2020 (Mhudiblu_PPA_v0/panPan3) (panPan3) * Bordetella bronchiseptica RB50 (bordBron) * Bordetella parapertussis 12822 (25) * Bordetella pertussis Tohama I (26) * Bordetella petrii DSM 12804 (28135) * Boreoeutherian Apr. 24. 2006 (UCSC Recon/borEut13) (borEut13) * Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12) (canHg12) * Borrelia afzelii PKo (17057) * Borrelia burgdorferi B31 (borrBurg) * Borrelia garinii PBi (12554) * Brachypodium distachyon JGI v3.1 * Brachypodium distachyon MIPS 1.2 * Bradyrhizobium japonicum USDA 110 (bradJapo) * Bradyrhizobium sp. BTAi1 (16137) * Bradyrhizobium sp. ORS278 (19575) * Brandt's myotis (bat) 28 Jun 2013 (ASM41265v1/myoBra1) (myoBra1) * Braney test Jul. 2013 (braNey1/braNey1) (braNey1) * Brassica oleracea Ensembl Genomes v2.1 * Brassica rapa Annotation v1.2 on assembly v1.1 (Phytozome 9.1) * Brassica rapa JGI FPsc1.3 * Brown kiwi Jun. 2015 (MPI-EVA AptMant0/aptMan1) (aptMan1) * Brown roatelo Jun 2014 (ASM69576v1/mesUni1) (mesUni1) * Brucella abortus biovar 1 str. 9-941 (9619) * Brucella canis ATCC 23365 (20243) * Brucella melitensis 16M (brucMeli) * Brucella melitensis biovar Abortus 2308 (16203) * Brucella ovis ATCC 25840 (12514) * Brucella suis 1330 (320) * Brucella suis ATCC 23445 (20371) * Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1) * Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) * Buchnera aphidicola str. Bp (Baizongia pistaciae) (256) * Buchnera aphidicola str. Cc (Cinara cedri) (16372) * Buchnera aphidicola str. Sg (Schizaphis graminum) (312) * Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) (melUnd1) * Bundibugyo ebolavirus Aug. 2014 (NC_014373.1/bunEbo1) (bunEbo1) * Burkholderia ambifaria AMMD (burkCepa_AMMD) * Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) * Burkholderia cenocepacia HI2424 (burkCeno_HI2424) * Burkholderia cenocepacia MC0-3 (17929) * Burkholderia mallei ATCC 23344 (burkMall_ATCC23344) * Burkholderia mallei NCTC 10229 (13943) * Burkholderia mallei NCTC 10247 (13946) * Burkholderia mallei SAVP1 (13947) * Burkholderia multivorans ATCC 17616 (17407) * Burkholderia pseudomallei 1106a (burkPseu_1106A) * Burkholderia pseudomallei 1710b (13954) * Burkholderia pseudomallei 668 (13953) * Burkholderia pseudomallei K96243 (178) * Burkholderia sp. 383 (burk383) * Burkholderia thailandensis E264 (burkThai_E264) * Burkholderia vietnamiensis G4 (burkViet_G4) * Burkholderia xenovorans LB400 (burkXeno_LB400) * Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1) * Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) * Bushbaby Dec. 2006 (Broad/otoGar1) (otoGar1) * Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) * C. angaria Oct. 2010 (WS225/caeAng1) (caeAng1) * C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2) * C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) * C. brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) * C. briggsae Apr. 2011 (WS225/cb4) (cb4) * C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) * C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3) * C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1) * C. elegans Aug. 2007 (WS180/ce5) (ce5) * C. elegans Feb 2009 (WS200/ce7) (ce7) * C. elegans Jan 2010 (WS210/ce9) (ce9) * C. elegans Jan. 2007 (WS170/ce4) (ce4) * C. elegans Jun 2009 (WS204/ce8) (ce8) * C. elegans Mar. 2004 (WS120/ce2) (ce2) * C. elegans March 2005 (WS140/ce3) (ce3) * C. intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) * C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1) * C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) * C. japonica Sep. 2010 (WUGSC 7.0.1/caeJap3) (caeJap3) * C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4) (caeJap4) * C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) * C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1) * C. remanei Jul. 2007 (WS220/caeRem4) (caeRem4) * C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) * C. remanei March 2005 (WUGSC prelim/caeRem1) (caeRem1) * C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3) * C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) * C. savignyi July 2005 (Sidow Lab 2.0/cioSav2) (cioSav2) * C. sp. 11 ju1373 Nov. 2010 (WUSTL 3.0.1/caeSp111) (caeSp111) * C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71) (caeSp71) * C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) * Cactus Nov. 2010 (CactusV3/cacTus3) (cacTus3) * Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2) * Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) * Caenorhabditis elegans Feb. 2013 (WBcel235/ce11) * Caenorhabditis elegans: ce10 * Caenorhabditis elegans: ce6 * Cajanus cajan Penguin Genomics v5.0 * Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) * Caldivirga maquilingensis IC-167 (caldMaqu1) * Campylobacter concisus 13826 (17159) * Campylobacter curvus 525.92 (17161) * Campylobacter fetus subsp. fetus 82-40 (campFetu_82_40) * Campylobacter hominis ATCC BAA-381 (20083) * Campylobacter jejuni RM1221 (campJeju_RM1221) * Campylobacter jejuni subsp. doylei 269.97 (17163) * Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) * Campylobacter jejuni subsp. jejuni 81116 (17953) * Campylobacter jejuni subsp. jejuni NCTC 11168 (campJeju) * Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) * Candidatus Blochmannia floridanus (blocFlor) * Candidatus Blochmannia pennsylvanicus str. BPEN (13875) * Candidatus Carsonella ruddii PV (candCars_RUDDII) * Candidatus Desulforudis audaxviator MP104C (21047) * Candidatus Korarchaeum cryptofilum OPF8 (16525) * Candidatus Methanoregula boonei 6A8 (methBoon1) * Candidatus Pelagibacter ubique HTCC1062 (candPela_UBIQUE_HTCC1) * Candidatus Protochlamydia amoebophila UWE25 (paraSp_UWE25) * Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) (16841) * Candidatus Sulcia muelleri GWSS (19617) * Candidatus Vesicomyosocius okutanii HA (18267) * Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1) * Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) * Capsella rubella JGI annotation v1.0 on assembly v1 * Capsella rubella JGI v1.0 * Capsicum annuum Pepper Genome v2.0 * Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) * Carica papaya Hawaii Agriculture Research Center * Carica papaya JGI ASGPB0.4 * Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) (felCat4) * Cat Mar. 2006 (Broad/felCat3) (felCat3) * Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) * Cat Nov. 2017 (Felis catus, domestic cat): felCat9 * Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) (felCat5) * Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1) * Caulobacter crescentus CB15 (caulCres) * Caulobacter sp. K31 (16306) * Cenchrus americanus v1.0 * CentromereY 2013 GrCh38 (centromeres1) * Chenopodium quinoa JGI v1.0 * Chicken (Gallus gallus): galGal6 * Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) * Chicken Feb. 2004 (WUGSC 1.0/galGal2) (galGal2) * Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) * Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4) * Chicken Oct. 2021 (bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) * Chimp Feb. 2011 (CSAC 2.1.4/panTro4) (panTro4) * Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6) * Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) * Chimp May 2016 (Pan_tro 3.0/panTro5) (panTro5) * Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) * Chimp Oct. 2010 (CGSC 2.1.3/panTro3) (panTro3) * Chinchilla May 2012 (ChiLan1.0/chiLan1) (chiLan1) * Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) * Chinese hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) * Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) * Chinese hamster Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) * Chinese pangolin Aug 2014 (M_pentadactyla-1.1.1/manPen1) (manPen1) * Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) (pelSin1) * Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1) (tupChi1) * Chlamydia muridarum Nigg (229) * Chlamydia trachomatis 434/Bu (28583) * Chlamydia trachomatis A/HAR-13 (13885) * Chlamydia trachomatis D/UW-3/CX (chlaTrac) * Chlamydia trachomatis L2b/UCH-1/proctitis (28585) * Chlamydomonas reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6 * Chlamydomonas reinhardtii JGI v5.5 * Chlamydophila abortus S26/3 (355) * Chlamydophila caviae GPIC (228) * Chlamydophila felis Fe/C-56 (370) * Chlamydophila pneumoniae AR39 (247) * Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029) * Chlamydophila pneumoniae J138 (257) * Chlamydophila pneumoniae TW-183 (420) * Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) * Chlorobium phaeobacteroides DSM 266 (12609) * Chlorobium tepidum TLS (chloTepi_TLS) * Chloroflexus aurantiacus J-10-fl (59) * Chromobacterium violaceum ATCC 12472 (chroViol) * Chromohalobacter salexigens DSM 3043 (chroSale_DSM3043) * Chuck-will's-widow Jun 2014 (ASM70074v1/capCar1) (capCar1) * Cicer arietinum LIS v1.0 * Citrobacter koseri ATCC BAA-895 (12716) * Citrullus lanatus Cucurbit Genomics Database * Citrullus lanatus Cucurbit Genomics Database v1.0 * Citrus clementina JGI v1.0 * Citrus sinensis JGI v1 assembly and v1.0 annotation * Clavibacter michiganensis subsp. michiganensis NCPPB 382 (clavMich_NCPPB_382) * Clavibacter michiganensis subsp. sepedonicus (184) * Clostridium acetobutylicum ATCC 824 (77) * Clostridium beijerinckii NCIMB 8052 (12637) * Clostridium botulinum A str. ATCC 19397 (19517) * Clostridium botulinum A str. ATCC 3502 (193) * Clostridium botulinum A str. Hall (19521) * Clostridium botulinum A3 str. Loch Maree (28507) * Clostridium botulinum B1 str. Okra (28505) * Clostridium botulinum F str. Langeland (19519) * Clostridium difficile 630 (78) * Clostridium kluyveri DSM 555 (19065) * Clostridium novyi NT (16820) * Clostridium perfringens ATCC 13124 (304) * Clostridium perfringens SM101 (12521) * Clostridium perfringens str. 13 (79) * Clostridium phytofermentans ISDg (16184) * Clostridium tetani E88 (81) * Clostridium thermocellum ATCC 27405 (314) * Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) * Coffea canephora Coffee Genome Hub v1 * Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) * Colwellia psychrerythraea 34H (colwPsyc_34H) * Common cuckoo Jun 2014 (ASM70932v1/cucCan1) (cucCan1) * Corchorus olitorius GenBank v1.0 * Corynebacterium diphtheriae NCTC 13129 (87) * Corynebacterium efficiens YS-314 (coryEffi_YS_314) * Corynebacterium glutamicum ATCC 13032 (13760) * Corynebacterium glutamicum ATCC 13032 (307) * Corynebacterium glutamicum R (19193) * Corynebacterium jeikeium K411 (13967) * Cow Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) * Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) * Cow Aug. 2009 (UMD3.1) (bosTauMd3) * Cow Mar. 2005 (Baylor 2.0/bosTau2) (bosTau2) * Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) (bosTau6) * Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) * Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) (bosTau7) * Coxiella burnetii Dugway 5J108-111 (16721) * Coxiella burnetii RSA 331 (16791) * Coxiella burnetii RSA 493 (coxiBurn) * Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) * Crowned crain Jun 2014 (ASM70989v1/balPav1) (balPav1) * Cuckoo roller May 2014 (ASM69178v1/lepDis1) (lepDis1) * Cucumis melo Melonomics v3.5 * Cucumis sativus L. JGI v1.0 * Cytophaga hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) * D. albomicans 21 May 2012 (DroAlb_1.0/droAlb1) (droAlb1) * D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2) * D. ananassae Feb. 2006 (droAna3) * D. ananassae July 2004 (TIGR/droAna1) (droAna1) * D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) * D. bipectinata 04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) * D. elegans 04 Mar 2013 (Dele_2.0/droEle2) (droEle2) * D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1) * D. erecta Feb. 2006 (droEre2) * D. eugracilis 04 Mar 2013 (Deug_2.0/droEug2) (droEug2) * D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2) (droFic2) * D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) * D. grimshawi Feb. 2006 (droGri2) * D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2) (droKik2) * D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) * D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3) * D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (dm6) * D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) * D. miranda 19 Apr 2013 (DroMir_2.2/droMir2) (droMir2) * D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1) * D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2) * D. mojavensis Feb. 2006 (droMoj3) * D. persimilis Oct. 2005 (Broad/droPer1) (droPer1) * D. pseudoobscura (dp4) (dp4) * D. pseudoobscura 11 Apr 2013 (Dpse_3.0/droPse3) (droPse3) * D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2) * D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) * D. rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) * D. sechellia Oct. 2005 (Broad/droSec1) (droSec1) * D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1) * D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) * D. takahashii 04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) * D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2) * D. virilis Feb. 2006 (droVir3) * D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1) * D. willistoni 03 Aug 2006 (dwil_caf1/droWil2) (droWil2) * D. willistoni Feb. 2006 (droWil1) * D. yakuba 27 Jun 2006 (dyak_caf1/droYak3) (droYak3) * D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1) * D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) * Dalmatian pelican May 2014 (ASM68737v1/pelCri1) (pelCri1) * Daucus carota JGI v2.0 * David's myotis (bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) * Dechloromonas aromatica RCB (dechArom_RCB) * Deer Tick (Ixodes scapularis) (IscaW1) * Dehalococcoides ethenogenes 195 (dehaEthe_195) * Dehalococcoides sp. BAV1 (15770) * Dehalococcoides sp. CBDB1 (15604) * Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300) * Deinococcus radiodurans R1 (deinRadi) * Delftia acidovorans SPH-1 (17413) * Desulfitobacterium hafniense Y51 (desuHafn_Y51) * Desulfococcus oleovorans Hxd3 (18007) * Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) * Desulfotomaculum reducens MI-1 (desuRedu_MI_1) * Desulfovibrio desulfuricans G20 (329) * Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) * Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) * Dichelobacter nodosus VCS1703A (dichNodo_VCS1703A) * Dinoroseobacter shibae DFL 12 (17417) * Dog July 2004 (Broad/canFam1) (canFam1) * Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) * Dog May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) * Dog May 2005 (Broad/canFam2) (canFam2) * Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) * Dog Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) * Dolphin Feb. 2008 (Broad/turTru1) (turTru1) * Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2) * Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) * Downy woodpecker Jun 2014 (ASM69900v1/picPub1) (picPub1) * Ebola virus 49 sequences: 5 Ebola, 2 Marburg strains (eboVir2) * Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1) * Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) * Ecoref Feb. 2013 (ecoRef3/ecoRef3) (ecoRef3) * Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4) * Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) * Ecoref Jan. 2013 (ecoRef2/ecoRef2) (ecoRef2) * Ehrlichia canis str. Jake (10694) * Ehrlichia chaffeensis str. Arkansas (325) * Ehrlichia ruminantium str. Gardel (13356) * Ehrlichia ruminantium str. Welgevonden (13355) * Ehrlichia ruminantium str. Welgevonden (ehrlRumi_WELGEVONDEN) * Elaeis guineensis EG5.1 * Elaeis guineensis NCBI Genome v1.0 * Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) * Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3) * Elephant May 2005 (Broad/loxAfr1) (loxAfr1) * Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) * Emperor penguin 06 Jun 2014 (ASM69914v1/aptFor1) (aptFor1) * Enterobacter sakazakii ATCC BAA-894 (12720) * Enterobacter sp. 638 (ente638) * Enterococcus faecalis V583 (enteFaec_V583) * Erythranthe guttata JGI v2.0 * Erythrobacter litoralis HTCC2594 (erytLito_HTCC2594) * Escherichia coli 536 (16235) * Escherichia coli APEC O1 (eschColi_APEC_O1) * Escherichia coli C str. ATCC 8739 (18083) * Escherichia coli CFT073 (eschColi_CFT073) * Escherichia coli DH10B (20079) * Escherichia coli E24377A (13960) * Escherichia coli EC4115 (eschColi_EC4115) * Escherichia coli HS (13959) * Escherichia coli K12 (eschColi_K12) * Escherichia coli O157:H7 EDL933 (259) * Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) * Escherichia coli SECEC SMS-3-5 (19469) * Escherichia coli TW14359 (eschColi_TW14359) * Escherichia coli UTI89 (16259) * Escherichia coli W3110 (16351) * Euarchontoglires Apr. 24. 2006 (UCSC Recon/euaGli13) (euaGli13) * Eucalyptus grandis JGI assembly v1.0, annotation v1.1 * Eucalyptus grandis JGI v2.0 * European sea bass Apr 2014 (seabass_V1.0/dicLab1) (dicLab1) * Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13) (eutHer13) * Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) * Ferret Apr. 2011 (MusPutFur1.0/musFur1) (musFur1) * Fervidobacterium nodosum Rt17-B1 (16719) * Finegoldia magna ATCC 29328 (18981) * Fission Yeast (S. pombe) (Schizosaccharomyces_pombe_1.1) * Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1) (sebRub1) * Flavobacterium johnsoniae UW101 (flavJohn_UW101) * Flavobacterium psychrophilum JIP02/86 (19979) * Foshan strain genomic contigs sequences, AaloF1 assembly. * Fragaria vesca JGI v1.1 * Fragaria vesca Strawberry Genome 1.0 * Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) * Francisella tularensis subsp. holarctica (16421) * Francisella tularensis subsp. holarctica FTA (20197) * Francisella tularensis subsp. holarctica OSU18 (17265) * Francisella tularensis subsp. novicida U112 (16088) * Francisella tularensis subsp. tularensis FSC198 (17375) * Francisella tularensis subsp. tularensis SCHU S4 (franTula_TULARENSIS) * Francisella tularensis subsp. tularensis WY96-3418 (18459) * Frankia alni ACN14a (17403) * Frankia sp. CcI3 (franCcI3) * Frankia sp. EAN1pec (13915) * Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) * Fugu Oct. 2004 (JGI 4.0/fr2) (fr2) * Fugu Oct. 2011 (FUGU5/fr3) (fr3) * Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (fusoNucl) * GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2) * GRCh38.p2 Dec 2014 (hg38Patch2) * Garter snake Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) * Geobacillus kaustophilus HTA426 (geobKaus_HTA426) * Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2) * Geobacter metallireducens GS-15 (geobMeta_GS15) * Geobacter sulfurreducens PCA (geobSulf) * Geobacter uraniireducens Rf4 (geobUran_RF4) * Gharial APR 2009 (preliminary/gavGan0) (gavGan0) * Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) (nomLeu1) * Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) * Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) (nomLeu3) * Glires Apr. 24. 2006 (UCSC Recon/gliRes13) (gliRes13) * Gloeobacter violaceus PCC 7421 (gloeViol) * Gluconacetobacter diazotrophicus PAl 5 (377) * Gluconobacter oxydans 621H (glucOxyd_621H) * Glycine max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly * Glycine max JGI Wm82.a2.v1 * Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1) * Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) * Golden hamster Mar 2013 (MesAur1.0/mesAur1) (mesAur1) * Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) (rhiRox1) * Golden-collared manakin May 2014 (ASM69201v1/manVit1) (manVit1) * Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2) * Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) * Gorilla Dec 2014 (gorGor4.1/gorGor4) (gorGor4) * Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5) * Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) * Gorilla Oct. 2008 (Sanger 0.1/gorGor1) (gorGor1) * Gossypium raimondii JGI annotation v2.1 on assembly v2.0 * Gossypium raimondii JGI v2.1 * Gramella forsetii KT0803 (gramFors_KT0803) * Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) * Grch37.p10 Sep. 2012 (GRCh37.p10/hg19Patch10) (hg19Patch10) * Grch37.p5 Jun. 2011 (GRCh37.p5/hg19Patch5) (hg19Patch5) * Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9) (hg19Patch9) * Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) * Great cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) * Greater horseshoe bat Sep. 2013 (ASM46549v1/rhiFer1) (rhiFer1) * Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) (chlSab2) * Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1) * Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) * Guppy Apr. 2014 (Guppy_female_1.0/poeRet1) (poeRet1) * H. contortus Dec. 2009 (WormBase WS210/haeCon1) (haeCon1) * Haemophilus ducreyi 35000HP (38) * Haemophilus influenzae 86-028NP (11752) * Haemophilus influenzae PittEE (16400) * Haemophilus influenzae PittGG (16401) * Haemophilus influenzae Rd KW20 (haemInfl_KW20) * Haemophilus somnus 129PT (haemSomn_129PT) * Haemophilus somnus 2336 (388) * Hahella chejuensis KCTC 2396 (haheChej_KCTC_2396) * Haloarcula marismortui ATCC 43049 (halMar1) * Halobacterium salinarum R1 (106) * Halobacterium sp. NRC-1 (haloHalo1) * Haloquadratum walsbyi DSM 16790 (haloWals1) * Halorhodospira halophila SL1 (haloHalo_SL1) * Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) * Head Louse (Pediculus humanus) (PhumU1) * Hedgehog June 2006 (Broad/eriEur1) (eriEur1) * Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) * Helicobacter acinonychis str. Sheeba (heliAcin_SHEEBA) * Helicobacter hepaticus ATCC 51449 (heliHepa) * Helicobacter pylori 26695 (heliPylo_26695) * Helicobacter pylori HPAG1 (heliPylo_HPAG1) * Helicobacter pylori J99 (heliPylo_J99) * Heliobacterium modesticaldum Ice1 (13427) * Herminiimonas arsenicoxydans (hermArse) * Herpetosiphon aurantiacus ATCC 23779 (16523) * Hevea brasiliensis NCBI Genomes v1 * Hg19 lgg inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) * Hlaref Apr. 2012 (hlaRefV1/hlaRef1) (hlaRef1) * Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2) * Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) * Hoatzin May 2014 (ASM69207v1/opiHoa1) (opiHoa1) * Hominidae Apr. 24. 2006 (UCSC Recon/homIni13) (homIni13) * Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) * Homo Sapiens (GRCh38) Transcriptome + ERCC * Homo sapiens (hg19 with mtDNA replaced with rCRS) (Homo_sapiens_nuHg19_mtrCRS) * Homo sapiens b37 (hg_g1k_v37) * Homo sapiens hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) * Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1) (corCor1) * Hordeum vulgare Ensembl Genomes ASM32608v1 * Hordeum vulgare IBC PGSB v2 * Hordeum vulgare MIPS * Horse Jan. 2007 (Broad/equCab1) (equCab1) * Horse Jan. 2018 (EquCab3.0/equCab3) * Horse Sep. 2007 (Broad/equCab2) (equCab2) * Houbara bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) * Human (Homo sapiens): hg19 Full * Human Apr. 2003 (NCBI33/hg15) (hg15) * Human CHM13 2.0 (T2T Consortium) Jan. 2022 * Human Dec. 2013 (GRCh38/hg38) (hg38) * Human Jan. 2021 isolate CHM13 (T2T Consortium) female * Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) * Human July 2003 (NCBI34/hg16) (hg16) * Human Mar. 2006 (NCBI36/hg18) (hg18) * Human May 2004 (NCBI35/hg17) (hg17) * Human herpesvirus 1 (15217) * Human repeats Nov. 2012 (1/repeats2) (repeats2) * Hydra magnipapillata str. 105 (Hydra_JCVI) * Hyperthermus butylicus DSM 5456 (hypeButy1) * Hyphomonas neptunium ATCC 15444 (hyphNept_ATCC15444) * Idiomarina loihiensis L2TR (idioLoih_L2TR) * Ignicoccus hospitalis KIN4/I (13914) * Indian false vampire Sep. 2013 (ASM46534v1/megLyr1) (megLyr1) * Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) * J. Craig Venter Sep. 2007 (HuRef/venter1) (venter1) * Jannaschia sp. CCS1 (jannCCS1) * Janthinobacterium sp. Marseille (16549) * Japanese eel 18 Mar-2014 (japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1) (angJap1) * Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) * Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1) * Killdeer Aug 2014 (ASM70802v2/chaVoc2) (chaVoc2) * Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) * Killer whale Jan 2013 (Oorc_1.1/orcOrc1) (orcOrc1) * Kineococcus radiotolerans SRS30216 (10689) * Kirref Apr. 2011 (kirRef/kirRef) (kirRef) * Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2) (kirRefV2) * Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) * Kirrefv4 Apr. 2011 (kirRefV4/kirRefV4) (kirRefV4) * Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5) * Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) * Korean Man (Homo_sapiens_AK1) * Lactobacillus acidophilus NCFM (82) * Lactobacillus brevis ATCC 367 (404) * Lactobacillus casei ATCC 334 (402) * Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (16871) * Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (403) * Lactobacillus gasseri ATCC 33323 (84) * Lactobacillus helveticus DPC 4571 (17811) * Lactobacillus johnsonii NCC 533 (9638) * Lactobacillus plantarum WCFS1 (lactPlan) * Lactobacillus reuteri F275 (15766) * Lactobacillus sakei subsp. sakei 23K (13435) * Lactobacillus salivarius UCC118 (lactSali_UCC118) * Lactococcus lactis subsp. cremoris MG1363 (18797) * Lactococcus lactis subsp. cremoris SK11 (401) * Lactococcus lactis subsp. lactis Il1403 (lactLact) * Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) (petMar3) * Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1) * Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) * Lancelet Apr. 2008 (JGI v2.0/braFlo2) (braFlo2) * Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1) * Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) * Lawsonia intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) * Legionella pneumophila str. Corby (17491) * Legionella pneumophila str. Lens (13126) * Legionella pneumophila str. Paris (13127) * Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (legiPneu_PHILADELPHIA) * Leifsonia xyli subsp. xyli str. CTCB07 (leifXyli_XYLI_CTCB0) * Leishmania major 2005 (lMaj5) * Leptospira borgpetersenii serovar Hardjo-bovis JB197 (16148) * Leptospira borgpetersenii serovar Hardjo-bovis L550 (16146) * Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (10687) * Leptospira interrogans serovar Lai str. 56601 (leptInte) * Leptothrix cholodnii SP-6 (20039) * Lesser Egyptian jerboa May 2012 (JacJac1.0/jacJac1) (jacJac1) * Leuconostoc citreum KM20 (16062) * Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) * Limpet Jul. 2013 (lotGig0/lotGig0) (lotGig0) * Listeria innocua Clip11262 (listInno) * Listeria monocytogenes EGD-e (276) * Listeria monocytogenes str. 4b F2365 (85) * Listeria welshimeri serovar 6b str. SLCC5334 (13443) * Little egret May 2014 (ASM68718v1/egrGar1) (egrGar1) * Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) * Lizard May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) * Lotus japonicus Kazusa 2.5 * Lysinibacillus sphaericus C3-41 (19619) * M. domestica 22 Apr 2013 (Musca_domestica-2.0.2/musDom2) (musDom2) * M. hapla Sep. 2008 (M. hapla VW9 WS210/melHap1) (melHap1) * M. incognita Feb. 2008 (M. incognita WS210/melInc1) (melInc1) * MMTV Nov. 2009 (MMTV/mmtv) (mmtv) * Macaca fascicularis Jun 2013 (macFas5) * Magnetococcus sp. MC-1 (magnMC1) * Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) * Maize (Zea mays) (Zea_mays_B73_RefGen_v2) * Malayan flying lemur Jun. 2014 (G_variegatus-3.0.2/galVar1) (galVar1) * Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) (anaPla1) * Malus domestica IASMA * Malus domestica Penguin Genomics v2 * Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) * Manihot esculenta Cassava4 * Manihot esculenta JGI v6.1 * Mannheimia succiniciproducens MBEL55E (mannSucc_MBEL55E) * Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1) * Marchantia polymorpha JGI v3.1 * Maricaulis maris MCS10 (mariMari_MCS10) * Marinobacter aquaeolei VT8 (mariAqua_VT8) * Marinomonas sp. MWYL1 (17445) * Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1) * Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3) * Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4) (calJac4) * Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) * Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2) * Medicago truncatula JCVI 4.0 * Medicago truncatula JGI Mt4.0v1 * Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) (geoFor1) * Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) * Mesoplasma florum L1 (mesoFlor_L1) * Mesorhizobium loti MAFF303099 (mesoLoti) * Mesorhizobium sp. BNC1 (10690) * Metallosphaera sedula DSM 5348 (metaSedu) * Methanobrevibacter smithii ATCC 35061 (methSmit1) * Methanocaldococcus jannaschii DSM 2661 (methJann1) * Methanococcoides burtonii DSM 6242 (methBurt2) * Methanococcus aeolicus Nankai-3 (methAeol1) * Methanococcus maripaludis C5 (methMari_C5_1) * Methanococcus maripaludis C6 (19639) * Methanococcus maripaludis C7 (methMari_C7) * Methanococcus maripaludis S2 (metMar1) * Methanococcus vannielii SB (methVann1) * Methanocorpusculum labreanum Z (methLabrZ_1) * Methanoculleus marisnigri JR1 (mculMari1) * Methanopyrus kandleri AV19 (methKand1) * Methanosaeta thermophila PT (methTherPT1) * Methanosarcina acetivorans C2A (metAce1) * Methanosarcina barkeri str. Fusaro (methBark1) * Methanosarcina mazei Go1 (methMaze1) * Methanosphaera stadtmanae DSM 3091 (methStad1) * Methanospirillum hungatei JF-1 (methHung1) * Methanothermobacter thermautotrophicus str. Delta H (methTher1) * Methylibium petroleiphilum PM1 (methPetr_PM1) * Methylobacillus flagellatus KT (methFlag_KT) * Methylobacterium extorquens PA1 (18637) * Methylobacterium radiotolerans JCM 2831 (18817) * Methylobacterium sp. 4-46 (18809) * Methylococcus capsulatus str. Bath (methCaps_BATH) * Mexican tetra (cavefish) Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) (astMex1) * Mhcref Apr. 2011 (mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) * Mhcref Jan. 2011 (mhcRefV1/mhcRef) (mhcRef) * Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) * Mhcref July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) * Mhcref July 2011 (mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) * Mhcref July 2011 (mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) * Mhcref July 2011 (mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) * Mhcref July 2011 (mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) * Mhcref July 2011 (mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) * Mhcref July 2011 (mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) * Mhcref July 2011 (mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) * Mhcref July 2011 (mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) * Mhcref July 2011 (mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) * Mhcref June 2011 (mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) * Mhcref June 2011 (mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) * Mhcref June 2011 (mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) * Mhcref Mar. 2012 (mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) * Mhcref Mar. 2012 (mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) * Mhcref Mar. 2012 (mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) * Mhcref Oct. 2011 (mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) * Mhcref Oct. 2011 (mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) * Mhcref Oct. 2011 (mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) * Mhcref Oct. 2011 (mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) * Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) (myoLuc2) * Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1) * Microcystis aeruginosa NIES-843 (27835) * Micromonas commoda JGI v3.0 * Minke whale Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) * Mm10haps Dec. 2011 (Mouse strains/mm10Strains1) (mm10Strains1) * Monkeypox virus MPXV-M5312_HM12_Rivers (MT903340.1/GCF_014621545.1) (mpxvRivers) * Moorella thermoacetica ATCC 39073 (moorTher_ATCC39073) * Mosquito (Aedes aegypti) (AaegL1) * Mosquito (Anopheles gambiae) (AgamP3) * Mosquito (Culex quinquefasciatus) (CpipJ1) * Mouse (Mus Musculus): mm10 Full * Mouse (Mus Musculus): mm39 Full * Mouse Aug. 2005 (NCBI35/mm7) (mm7) * Mouse Feb. 2006 (NCBI36/mm8) (mm8) * Mouse July 2007 (NCBI37/mm9) (mm9) * Mouse May 2004 (mm5) * Mouse lemur Jul. 2007 (Broad/micMur1) (micMur1) * Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) * Musa acuminata Banana Genome v1.0 * Musa acuminata Banana Genome v2.0 * Musa acuminata Genescope-Cirad * Mycobacterium abscessus (15691) * Mycobacterium avium 104 (88) * Mycobacterium avium subsp. paratuberculosis K-10 (91) * Mycobacterium bovis AF2122/97 (89) * Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) * Mycobacterium gilvum PYR-GCK (15760) * Mycobacterium leprae TN (90) * Mycobacterium smegmatis str. MC2 155 (92) * Mycobacterium sp. JLS (16079) * Mycobacterium sp. KMS (16081) * Mycobacterium sp. MCS (15762) * Mycobacterium tuberculosis CDC1551 (223) * Mycobacterium tuberculosis F11 (15642) * Mycobacterium tuberculosis H37Ra (18883) * Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) * Mycobacterium ulcerans Agy99 (16230) * Mycobacterium vanbaalenii PYR-1 (15761) * Mycoplasma agalactiae PG2 (16095) * Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) * Mycoplasma gallisepticum R (409) * Mycoplasma genitalium G37 (mycoGeni) * Mycoplasma hyopneumoniae 232 (13120) * Mycoplasma hyopneumoniae 7448 (10639) * Mycoplasma hyopneumoniae J (10675) * Mycoplasma mobile 163K (10697) * Mycoplasma mycoides subsp. mycoides SC str. PG1 (10616) * Mycoplasma penetrans HF-2 (176) * Mycoplasma pneumoniae M129 (99) * Mycoplasma pulmonis UAB CTIP (100) * Mycoplasma synoviae 53 (10676) * Myxococcus xanthus DK 1622 (myxoXant_DK_1622) * Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) (hetGla2) * Naked mole-rat Jul. 2011 (BGI HetGla_1.0/hetGla1) (hetGla1) * Nanoarchaeum equitans Kin4-M (nanEqu1) * Natronomonas pharaonis DSM 2160 (natrPhar1) * Neisseria gonorrhoeae FA 1090 (neisGono_FA1090_1) * Neisseria meningitidis 053442 (16393) * Neisseria meningitidis FAM18 (neisMeni_FAM18_1) * Neisseria meningitidis MC58 (neisMeni_MC58_1) * Neisseria meningitidis Z2491 (neisMeni_Z2491_1) * Nelumbo nucifera LOTUS-DB v1.1 * Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) * Nile tilapia Jan. 2011 (Broad oreNil1.0/oreNil1) (oreNil1) * Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) (oreNil2) * Nitratiruptor sp. SB155-2 (18963) * Nitrobacter hamburgensis X14 (13473) * Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255) * Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) * Nitrosomonas europaea ATCC 19718 (nitrEuro) * Nitrosomonas eutropha C91 (13913) * Nitrosopumilus maritimus SCM1 (19265) * Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) * Nocardia farcinica IFM 10152 (nocaFarc_IFM10152) * Nocardioides sp. JS614 (nocaJS61) * Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) * Northern carmine bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) * Northern fulmar May 2014 (ASM69083v1/fulGla1) (fulGla1) * Northern pike Jul 2014 (EsoLuc1.0/esoLuc1) (esoLuc1) * Nostoc sp. PCC 7120 (nostSp) * Notyet Oct. 2011 (notYet1/calMil0) (calMil0) * Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444) * Oceanobacillus iheyensis HTE831 (oceaIhey) * Ochrobactrum anthropi ATCC 49188 (19485) * Oenococcus oeni PSU-1 (oenoOeni_PSU_1) * Oikopleura dioica (od01) * Onion yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) * Opossum Jan. 2006 (Broad/monDom4) (monDom4) * Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1) * Opossum Oct. 2006 (Broad/monDom5) (monDom5) * Orangutan Jan. 2018 (Susie_PABv2/ponAbe3) (ponAbe3) * Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2) * Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) * Oropetium thomaeum JGI v1.0 * Oryza brachyantha Ensembl Plants v1.4b * Oryza sativa ssp. indica 9311_BGF_2005 * Oryza sativa ssp. indica MBKBASE v1.0 * Oryza sativa ssp. japonica JGI v7.0 * Oryza sativa ssp. japonica MSU RGAP 7 * Ostreococcus lucimarinus JGI 2.0 * Ostreococcus lucimarinus JGI v2.0 assembly and annotation * Ostrich 06 Jun-2014 (ASM69896v1/strCam1) (strCam1) * P. falciparum Plasmodium falciparum (?/falciparum) (falciparum) * P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2) (priPac2) * P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) * Pacific walrus Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) * Painted turtle Dec. 2011 (v3.0.1/chrPic1) (chrPic1) * Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2) * Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) * Parabacteroides distasonis ATCC 8503 (13485) * Paracoccus denitrificans PD1222 (paraDeni_PD1222) * Parnell's mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) * Parrot Jan. 2013 (AV1/amaVit1) (amaVit1) * Parvibaculum lavamentivorans DS-1 (17639) * Pasteurella multocida subsp. multocida str. Pm70 (pastMult) * Pectobacterium atrosepticum SCRI1043 (erwiCaro_ATROSEPTICA) * Pediococcus pentosaceus ATCC 25745 (pediPent_ATCC25745) * Pelobacter carbinolicus DSM 2380 (peloCarb) * Pelobacter propionicus DSM 2379 (13384) * Pelodictyon luteolum DSM 273 (peloLute_DSM273) * Pelotomaculum thermopropionicum SI (peloTher_SI) * Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) (falPer1) * Petrotoga mobilis SJ95 (17679) * Petunia axillaris Sol Genomics v1.6.2 * Phalaenopsis equestris Genomics v1.0 * Photobacterium profundum SS9 (photProf_SS9) * Photorhabdus luminescens subsp. laumondii TTO1 (photLumi) * Phyllostachys edulis NCGR v1.0 * Physcomitrella patens JGI assembly release v1.1 and COSMOSS annotation v1.6 * Physcomitrella patens JGI v3.3 * Physcomitrella patens assembly version 1.2b (2014/03/27): pp1.2b * Picrophilus torridus DSM 9790 (picrTorr1) * Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) (susScr3) * Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11) * Pig May 2010 (Sscrofa9.58) * Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2) * Pika Jul. 2008 (Broad/ochPri2) (ochPri2) * Pika May 2012 (OchPri3.0/ochPri3) (ochPri3) * Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12) (plasFalc3D7V12) * Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) * Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1) * Polar bear 09 May-2014 (UrsMar_1.0/ursMar1) (ursMar1) * Polaromonas naphthalenivorans CJ2 (13418) * Polaromonas sp. JS666 (polaJS66) * Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) * Poplar (Populus trichocarpa) (Ptrichocarpa_156) * Populus trichocarpa JGI assembly release v3.0, annotation v3.0 * Populus trichocarpa JGI v3.1 * Porphyromonas gingivalis W83 (porpGing_W83) * Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1) * Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) * Primate Apr. 24. 2006 (UCSC Recon/priMat13) (priMat13) * Princess of Burundi May 2011 (NeoBri1.0/neoBri1) (neoBri1) * Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1) * Prochlorococcus marinus str. AS9601 (13548) * Prochlorococcus marinus str. MIT 9211 (13551) * Prochlorococcus marinus str. MIT 9215 (18633) * Prochlorococcus marinus str. MIT 9301 (15746) * Prochlorococcus marinus str. MIT 9303 (13496) * Prochlorococcus marinus str. MIT 9312 (13910) * Prochlorococcus marinus str. MIT 9313 (220) * Prochlorococcus marinus str. MIT 9515 (13617) * Prochlorococcus marinus str. NATL1A (15660) * Prochlorococcus marinus str. NATL2A (13911) * Prochlorococcus marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) * Prochlorococcus marinus subsp. pastoris str. CCMP1986 (213) * Propionibacterium acnes KPA171202 (propAcne_KPA171202) * Prosthecochloris vibrioformis DSM 265 (12607) * Prunus persica JGI release v1.0 * Prunus persica JGI v2.1 * Przewalski horse Jun 2014 (Burgud/equPrz1) (equPrz1) * Pseudoalteromonas atlantica T6c (13454) * Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) * Pseudomonas aeruginosa PA7 (16720) * Pseudomonas aeruginosa PAO1 (pseuAeru) * Pseudomonas aeruginosa UCBPP-PA14 (386) * Pseudomonas entomophila L48 (16800) * Pseudomonas fluorescens Pf-5 (327) * Pseudomonas fluorescens PfO-1 (12) * Pseudomonas mendocina ymp (17457) * Pseudomonas putida F1 (13909) * Pseudomonas putida GB-1 (17629) * Pseudomonas putida KT2440 (267) * Pseudomonas putida W619 (17053) * Pseudomonas stutzeri A1501 (16817) * Pseudomonas syringae pv. phaseolicola 1448A (12416) * Pseudomonas syringae pv. syringae B728a (323) * Pseudomonas syringae pv. tomato str. DC3000 (359) * Psychrobacter arcticus 273-4 (psycArct_273_4) * Psychrobacter cryohalolentis K5 (13920) * Psychrobacter sp. PRwf-1 (15759) * Psychromonas ingrahamii 37 (psycIngr_37) * Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) * Purple Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) * Pyrobaculum aerophilum str. IM2 (pyrAer1) * Pyrobaculum arsenaticum DSM 13514 (pyroArse1) * Pyrobaculum calidifontis JCM 11548 (pyroCali1) * Pyrobaculum islandicum DSM 4184 (pyroIsla1) * Pyrococcus abyssi GE5 (pyrAby1) * Pyrococcus furiosus DSM 3638 (pyrFur2) * Pyrococcus horikoshii OT3 (pyrHor1) * Pyrus bretschneideri Pear Genome Project v1.0 * Rabbit Apr. 2009 (oryCun2) * Rabbit May 2005 (Broad/oryCun1) (oryCun1) * Ralstonia eutropha H16 (13603) * Ralstonia eutropha JMP134 (ralsEutr_JMP134) * Ralstonia metallidurans CH34 (250) * Ralstonia solanacearum GMI1000 (ralsSola) * Rat (Rattus norvegicus): rn5 * Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) * Rat June 2003 (Baylor 3.1/rn3) (rn3) * Rat Nov. 2004 (Baylor 3.4/rn4) (rn4) * Rattus norvegicus Nov. 2020 (mRatBN7.2/rn7) * Red Flour Beetle (Tribolium castaneum) (Tcas_3.0) * Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1) * Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) * Red-throated loon May 2014 (ASM69087v1/gavSte1) (gavSte1) * Renibacterium salmoninarum ATCC 33209 (19227) * RepBase Jun. 2012 (hg19/repBase0) (repBase0) * RepBase Sep. 2012 (17.08/repBase1) (repBase1) * Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1) (resEbo1) * Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) * Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2) * Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7) (rheMac7) * Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) * Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) (rheMac3) * Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1) (bucRhi1) * Rhizobium etli CFN 42 (rhizEtli_CFN_42) * Rhizobium leguminosarum bv. viciae 3841 (344) * Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) * Rhodobacter sphaeroides ATCC 17025 (15755) * Rhodobacter sphaeroides ATCC 17029 (15754) * Rhodococcus sp. RHA1 (rhodRHA1) * Rhodoferax ferrireducens T118 (13908) * Rhodopirellula baltica SH 1 (pireSp) * Rhodopseudomonas palustris BisA53 (15751) * Rhodopseudomonas palustris BisB18 (15750) * Rhodopseudomonas palustris BisB5 (15749) * Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) * Rhodopseudomonas palustris HaA2 (15747) * Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170) * Rice (Oryza sativa ssp. japonica var. Nipponbare) (oryza_sativa_japonica_nipponbare_IRGSP4.0) * Ricinus communis JCVI 1.0 * Ricinus communis JGI v0.1 * Rickettsia akari str. Hartford (12953) * Rickettsia bellii OSU 85-389 (17237) * No matching references found. * List is empty. Start Reset Cancel Drop files here Collection: List * List * Pair * List of Pairs * No matching s found. * List is empty. Type (set all): Auto-detect * Auto-detect * 4dn_pairs * 4dn_pairsam * a3m * ab1 * agilentbrukeryep.d.tar * agilentmasshunter.d.tar * agp * ampvis2 * arb * arb.gz * arff * asn1 * asn1-binary * augustus * avi * axt * bam * bcf * bcf_uncompressed * bcsl.model * bcsl.ts * bed * bed12 * bed6 * bed_tabix.gz * bedgraph * bedstrict * bgzip * bigbed * bigwig * bil * biom1 * biom2 * blastxml * blib * bref3 * brukerbaf.d.tar * brukertdf.d.tar * bus * castep * cel * cell * chain * chira.sqlite * chrint * cif * cisml * ckpt * cmap * cml * cnn * cnr * cns * consensusxml * cool * cps * cpt * cram * csfasta * csv * ct * ctl.result * cuffdiff.sqlite * cxb * d3_hierarchy * daa * dada2_dada * dada2_errorrates * dada2_mergepairs * dada2_sequencetable * dada2_uniques * dbn * dbnsfp.tabular * dcd * deeptools_compute_matrix_archive * deeptools_coverage_matrix * den_fmt * dlib * drf * dta * dta2d * dzi * edr * edta * eland * elandmulti * elib * embl * encodepeak * excel.xls * expression.json * extxyz * fai * fast5 * fast5.tar * fast5.tar.bz2 * fast5.tar.gz * fast5.tar.xz * fasta * fasta.gz * fastg * fastq * fastq.bz2 * fastq.gz * fastqcssanger * fastqcssanger.bz2 * fastqcssanger.gz * fastqillumina * fastqillumina.bz2 * fastqillumina.gz * fastqsanger * fastqsanger.bz2 * fastqsanger.gz * fastqsolexa * fastqsolexa.bz2 * fastqsolexa.gz * fcs * featurexml * ffdata * ffindex * fits * flowclr * flowframe * flowmfi * flowscore * flowset * flowstat1 * flowstat2 * flowstat3 * flowtext * flv * fps * fqtoc * fsom * gafa.sqlite * gal * gatk_dbsnp * gatk_interval * gatk_recal * gatk_report * gatk_tranche * gemini.sqlite * genbank * genbank.gz * genenotebook * geojson * gfa1 * gfa1.gz * gfa2 * gfa2.gz * gff * gff3 * gff3.bz2 * gff3.gz * gff_tabix.gz * gii * gii.gz * gmsh.geo * gmsh.msh * gpr * grd * grd.tgz * grib * gro * gtf * h5 * h5ad * h5mlm * hdf4 * hdr * hdt * hep.root * hexrd.accepted_orientations * hexrd.eta_ome.npz * hexrd.images.npz * hexrd.materials.h5 * hexrd.scored_orientations.npz * hexrd.yml * hhr * hic_matrix * hist * hlf * hmm2 * hmm3 * ibd * icm * idat * idat * idpdb * idxml * imgt.json * inchi * inp * inpcrd * intermine_tabular * interval * ipynb * itp * jellyfish * jp2 * json * jsonld * juicebox_hic * juicer_medium_tabix.gz * kallisto.idx * kroenik * ktab * lav * len * loom * maf * magres * mascotxml * maskinfo-asn1 * maskinfo-asn1-binary * mat * mcool * mdp * memepsp * memexml * meryldb * metacyto_clr.txt * metacyto_stats.txt * metacyto_summary.txt * mgf * mkv * mol * mol2 * mongodb * mothur.accnos * mothur.align * mothur.align.check * mothur.align.report * mothur.axes * mothur.cons.taxonomy * mothur.count_table * mothur.design * mothur.dist * mothur.filter * mothur.filtered.masked.quan * mothur.filtered.quan * mothur.freq * mothur.groups * mothur.list * mothur.lower.dist * mothur.map * mothur.masked.quan * mothur.names * mothur.oligos * mothur.otu * mothur.otu.corr * mothur.otulabels * mothur.pair.dist * mothur.quan * mothur.rabund * mothur.rdp.taxonomy * mothur.ref.taxonomy * mothur.relabund * mothur.sabund * mothur.seq.taxonomy * mothur.sff.flow * mothur.shared * mothur.square.dist * mothur.summary * mothur.tax.summary * mothur.tre * mov * mp3 * mp4 * mpg * mrc * mrm * ms2 * msh * msp * mtx * mz.sqlite * mz5 * mzdata * mzid * mzml * mzq * mzqc * mztab * mztab2 * mzxml * n3 * ncbi_genome_dataset.zip * ncbitaxonomy.sqlite * ndx * neper.mscell * neper.points * neper.points.tsv * neper.tesr * neper.tess * netcdf * newick * nex * nhx * nii1 * nii1.gz * nii2 * nii2.gz * nmrml * no_unzip.zip * npy * npz * nt * obo * odgi * ome.tiff * onnx * osw * owl * oxlicg * oxligl * oxling * oxliss * oxlist * oxlits * paf * paf.gz * par * param * paramxml * parquet * pdb * pdbqt * pdf * peff * peplist * peptideshaker_archive * pepxml * pepxml.tsv * phar * phylip * phyloseq * phyloxml * picard_interval_list * pileup * pithya.model * pithya.property * pithya.result * plyascii * plybinary * png * postgresql * pov * pqp * pqr * pretext * prj * prmtop * probam * probed * prof * protobuf2 * protobuf3 * protxml * protxml.tsv * psl * psms * pssm-asn1 * ptkscmp * qcml * qcml * qiime2.tabular * qname_sorted.bam * qual454 * qualillumina * qualsolexa * qualsolid * qza * qzv * rdata * rdata.camera.negative * rdata.camera.positive * rdata.camera.quick * rdata.msnbase.raw * rdata.sce * rdata.xcms.fillpeaks * rdata.xcms.findchrompeaks * rdata.xcms.group * rdata.xcms.raw * rdata.xcms.retcor * rdf * rdock_as * rds * rma6 * rna_eps * sam * sbml * sbol * scf * scidx * scool * scool * sdf * searchgui_archive * sf3 * sff * sif * smat * smi * snaphmm * snpeffdb * snpmatrix * snptest * source.c * source.cpp * source.cs * source.go * source.h * source.py * source.rs * spec.xml * splib_noindex * sqlite * sqmass * sra * sra_manifest.tabular * star * stl * stl * stockholm * storm.check * storm.sample * svg * tabular * tabular.gz * tandem * tar * taxonomy * tck * textgrid * tgz * thermo.raw * tiff * toml * top * tpr * trackhub * trafoxml * trafoxml * traml * trk * trr * tsv * ttl * twobit * txt * uniprotxml * unsorted.bam * vcf * vcf_bgzip * vel * vg * visium.tar.gz * vtkascii * vtkbinary * watersmasslynx.raw.tar * wav * wiff.tar * wiff2.tar * wig * xg * xgmml * xlsx * xmfa * xml * xquest.xml * xsd * xtc * xvg * xyz * yaml * zip * zset.geof * No matching file types found. * List is empty. This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed. Reference (set all): unspecified (?) * unspecified (?) * A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) * A. gambiae Oct. 2006 (AgamP3/anoGam3) (anoGam3) * A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4) (apiMel4) * A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) * A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1) * A. mellifera genome (apiMel3, Baylor HGSC Amel_3.0) * ARS1 Aug. 2016 Capra hircus (goat) (San Clemente 2016 USDA) (GCF_001704415.2) * Aardvark May 2012 (OryAfe1.0/oryAfe1) (oryAfe1) * Acaryochloris marina MBIC11017 (12997) * Acholeplasma laidlawii PG-8A (19259) * Acidiphilium cryptum JF-5 (acidCryp_JF_5) * Acidobacteria bacterium Ellin345 (acidBact_ELLIN345) * Acidothermus cellulolyticus 11B (acidCell_11B) * Acidovorax avenae subsp. citrulli AAC00-1 (15708) * Acidovorax sp. JS42 (acidJS42) * Acinetobacter baumannii (13001) * Acinetobacter baumannii (28921) * Acinetobacter baumannii ATCC 17978 (17477) * Acinetobacter baumannii Oct. 2012 (aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) * Acinetobacter sp. ADP1 (acinSp_ADP1) * Actinidia chinensis FEI Lab v1.0 * Actinobacillus pleuropneumoniae L20 (actiPleu_L20) * Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135) * Actinobacillus succinogenes 130Z (13370) * Adelie penguin Jun 2014 (ASM69910v1/pygAde1) (pygAde1) * Aeromonas hydrophila subsp. hydrophila ATCC 7966 (aeroHydr_ATCC7966) * Aeromonas salmonicida subsp. salmonicida A449 (16723) * Aeropyrum pernix K1 (aerPer1) * African Clawed Frog (xenLae9.2) * African clawed frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) * Afrotheria Apr. 24. 2006 (UCSC Recon/afrOth13) (afrOth13) * Agrobacterium tumefaciens str. C58 (283) * Alcanivorax borkumensis SK2 (alcaBork_SK2) * Alkalilimnicola ehrlichei MLHE-1 (alkaEhrl_MLHE_1) * Alkaliphilus metalliredigens QYMF (13006) * Alkaliphilus oremlandii OhILAs (16083) * Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) * Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) * Amazon molly 28 Oct-2013 (Poecilia_formosa-5.1.2/poeFor1) (poeFor1) * Amborella trichopoda Amborella V1.0 * Amborella trichopoda JGI v1.0 * American alligator Aug. 2012 (allMis0.2/allMis1) (allMis1) * American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0) (allMis0) * American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) * American flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) * Amur tiger 06 Sep 2013 (PanTig1.0/panTig1) (panTig1) * Anabaena variabilis ATCC 29413 (anabVari_ATCC29413) * Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C) * Anaeromyxobacter sp. Fw109-5 (17729) * Ananas comosus JGI v3.0 * Anaplasma marginale str. St. Maries (anapMarg_ST_MARIES) * Anaplasma phagocytophilum HZ (336) * Anna's hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) * Apostasia shenzhenica v1.0 * Aquifex aeolicus VF5 (aquiAeol) * Arabidopsis lyrata (Araly1) * Arabidopsis lyrata JGI v1.0 * Arabidopsis lyrata JGI v2.1 * Arabidopsis thaliana * Arabidopsis thaliana COL-0 Araport11 * Arabidopsis thaliana COL-0 TAIR10 * Arabidopsis thaliana TAIR10 (Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) * Arabidopsis thaliana TAIR7 (araTha1) * Arabidopsis thaliana TAIR8 (arabidopsis_tair8) * Arabidopsis thaliana TAIR9 (arabidopsis) * Arachis ipaensis Peanut Base v1.0 * Archaeoglobus fulgidus DSM 4304 (archFulg1) * Arcobacter butzleri RM4018 (16319) * Arctic lamprey Sep 2013 (LetJap1.0/letCam1) (letCam1) * Armadillo Dec. 2011 (Baylor/dasNov3) (dasNov3) * Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) * Armadillo May 2005 (Broad/dasNov1) (dasNov1) * Arthrobacter aurescens TC1 (12512) * Arthrobacter sp. FB24 (arthFB24) * Asparagus officinalis v1.1 * Aster yellows witches'-broom phytoplasma AYWB (13478) * Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) (gadMor1) * Azoarcus sp. BH72 (13217) * Azoarcus sp. EbN1 (azoaSp_EBN1) * Azorhizobium caulinodans ORS 571 (azorCaul2) * B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1) * Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) * Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) (papAnu2) * Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1) * Bacillus amyloliquefaciens FZB42 (13403) * Bacillus anthracis str. 'Ames Ancestor' (10784) * Bacillus anthracis str. Ames (baciAnth_AMES) * Bacillus anthracis str. Sterne (10878) * Bacillus cereus ATCC 10987 (74) * Bacillus cereus ATCC 14579 (384) * Bacillus cereus E33L (12468) * Bacillus cereus subsp. cytotoxis NVH 391-98 (13624) * Bacillus clausii KSM-K16 (13291) * Bacillus halodurans C-125 (baciHalo) * Bacillus licheniformis ATCC 14580 (12388) * Bacillus licheniformis ATCC 14580 (13082) * Bacillus pumilus SAFR-032 (20391) * Bacillus subtilis subsp. subtilis str. 168 (baciSubt) * Bacillus thuringiensis serovar konkukian str. 97-27 (10877) * Bacillus thuringiensis str. Al Hakam (18255) * Bacillus weihenstephanensis KBAB4 (13623) * Bacteroides fragilis NCTC 9343 (46) * Bacteroides fragilis YCH46 (13067) * Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) * Bacteroides vulgatus ATCC 8482 (13378) * Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) * Bald eagle Aug 2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) * Bar tailed trogon 16 Jun 2014 (ASM70340v1/apaVit1) (apaVit1) * Barn owl May 2014 (ASM68720v1/tytAlb1) (tytAlb1) * Bartonella bacilliformis KC583 (16249) * Bartonella henselae str. Houston-1 (bartHens_HOUSTON_1) * Bartonella quintana str. Toulouse (44) * Bartonella tribocorum CIP 105476 (28109) * Baumannia cicadellinicola str. Hc (Homalodisca coagulata) (baumCica_HOMALODISCA) * Bdellovibrio bacteriovorus HD100 (bdelBact) * Beta vulgaris RefBeet 1.1 * Beta vulgaris RefBeet v1.2 * Bicolor damselfish May 2014 (Stegastes_partitus-1.0.2/stePar1) (stePar1) * Bifidobacterium adolescentis ATCC 15703 (16321) * Bifidobacterium longum NCC2705 (bifiLong) * Big brown bat Jul 2012 (EptFus1.0/eptFus1) (eptFus1) * Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1) * Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) * Black rockcod Jul 2014 (NC01/notCor1) (notCor1) * Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2) * Bonobo May 2012 (Max-Planck/panPan1) (panPan1) * Bonobo May 2020 (Mhudiblu_PPA_v0/panPan3) (panPan3) * Bordetella bronchiseptica RB50 (bordBron) * Bordetella parapertussis 12822 (25) * Bordetella pertussis Tohama I (26) * Bordetella petrii DSM 12804 (28135) * Boreoeutherian Apr. 24. 2006 (UCSC Recon/borEut13) (borEut13) * Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12) (canHg12) * Borrelia afzelii PKo (17057) * Borrelia burgdorferi B31 (borrBurg) * Borrelia garinii PBi (12554) * Brachypodium distachyon JGI v3.1 * Brachypodium distachyon MIPS 1.2 * Bradyrhizobium japonicum USDA 110 (bradJapo) * Bradyrhizobium sp. BTAi1 (16137) * Bradyrhizobium sp. ORS278 (19575) * Brandt's myotis (bat) 28 Jun 2013 (ASM41265v1/myoBra1) (myoBra1) * Braney test Jul. 2013 (braNey1/braNey1) (braNey1) * Brassica oleracea Ensembl Genomes v2.1 * Brassica rapa Annotation v1.2 on assembly v1.1 (Phytozome 9.1) * Brassica rapa JGI FPsc1.3 * Brown kiwi Jun. 2015 (MPI-EVA AptMant0/aptMan1) (aptMan1) * Brown roatelo Jun 2014 (ASM69576v1/mesUni1) (mesUni1) * Brucella abortus biovar 1 str. 9-941 (9619) * Brucella canis ATCC 23365 (20243) * Brucella melitensis 16M (brucMeli) * Brucella melitensis biovar Abortus 2308 (16203) * Brucella ovis ATCC 25840 (12514) * Brucella suis 1330 (320) * Brucella suis ATCC 23445 (20371) * Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1) * Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) * Buchnera aphidicola str. Bp (Baizongia pistaciae) (256) * Buchnera aphidicola str. Cc (Cinara cedri) (16372) * Buchnera aphidicola str. Sg (Schizaphis graminum) (312) * Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) (melUnd1) * Bundibugyo ebolavirus Aug. 2014 (NC_014373.1/bunEbo1) (bunEbo1) * Burkholderia ambifaria AMMD (burkCepa_AMMD) * Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) * Burkholderia cenocepacia HI2424 (burkCeno_HI2424) * Burkholderia cenocepacia MC0-3 (17929) * Burkholderia mallei ATCC 23344 (burkMall_ATCC23344) * Burkholderia mallei NCTC 10229 (13943) * Burkholderia mallei NCTC 10247 (13946) * Burkholderia mallei SAVP1 (13947) * Burkholderia multivorans ATCC 17616 (17407) * Burkholderia pseudomallei 1106a (burkPseu_1106A) * Burkholderia pseudomallei 1710b (13954) * Burkholderia pseudomallei 668 (13953) * Burkholderia pseudomallei K96243 (178) * Burkholderia sp. 383 (burk383) * Burkholderia thailandensis E264 (burkThai_E264) * Burkholderia vietnamiensis G4 (burkViet_G4) * Burkholderia xenovorans LB400 (burkXeno_LB400) * Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1) * Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) * Bushbaby Dec. 2006 (Broad/otoGar1) (otoGar1) * Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) * C. angaria Oct. 2010 (WS225/caeAng1) (caeAng1) * C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2) * C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) * C. brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) * C. briggsae Apr. 2011 (WS225/cb4) (cb4) * C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) * C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3) * C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1) * C. elegans Aug. 2007 (WS180/ce5) (ce5) * C. elegans Feb 2009 (WS200/ce7) (ce7) * C. elegans Jan 2010 (WS210/ce9) (ce9) * C. elegans Jan. 2007 (WS170/ce4) (ce4) * C. elegans Jun 2009 (WS204/ce8) (ce8) * C. elegans Mar. 2004 (WS120/ce2) (ce2) * C. elegans March 2005 (WS140/ce3) (ce3) * C. intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) * C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1) * C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) * C. japonica Sep. 2010 (WUGSC 7.0.1/caeJap3) (caeJap3) * C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4) (caeJap4) * C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) * C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1) * C. remanei Jul. 2007 (WS220/caeRem4) (caeRem4) * C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) * C. remanei March 2005 (WUGSC prelim/caeRem1) (caeRem1) * C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3) * C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) * C. savignyi July 2005 (Sidow Lab 2.0/cioSav2) (cioSav2) * C. sp. 11 ju1373 Nov. 2010 (WUSTL 3.0.1/caeSp111) (caeSp111) * C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71) (caeSp71) * C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) * Cactus Nov. 2010 (CactusV3/cacTus3) (cacTus3) * Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2) * Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) * Caenorhabditis elegans Feb. 2013 (WBcel235/ce11) * Caenorhabditis elegans: ce10 * Caenorhabditis elegans: ce6 * Cajanus cajan Penguin Genomics v5.0 * Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) * Caldivirga maquilingensis IC-167 (caldMaqu1) * Campylobacter concisus 13826 (17159) * Campylobacter curvus 525.92 (17161) * Campylobacter fetus subsp. fetus 82-40 (campFetu_82_40) * Campylobacter hominis ATCC BAA-381 (20083) * Campylobacter jejuni RM1221 (campJeju_RM1221) * Campylobacter jejuni subsp. doylei 269.97 (17163) * Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) * Campylobacter jejuni subsp. jejuni 81116 (17953) * Campylobacter jejuni subsp. jejuni NCTC 11168 (campJeju) * Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) * Candidatus Blochmannia floridanus (blocFlor) * Candidatus Blochmannia pennsylvanicus str. BPEN (13875) * Candidatus Carsonella ruddii PV (candCars_RUDDII) * Candidatus Desulforudis audaxviator MP104C (21047) * Candidatus Korarchaeum cryptofilum OPF8 (16525) * Candidatus Methanoregula boonei 6A8 (methBoon1) * Candidatus Pelagibacter ubique HTCC1062 (candPela_UBIQUE_HTCC1) * Candidatus Protochlamydia amoebophila UWE25 (paraSp_UWE25) * Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) (16841) * Candidatus Sulcia muelleri GWSS (19617) * Candidatus Vesicomyosocius okutanii HA (18267) * Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1) * Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) * Capsella rubella JGI annotation v1.0 on assembly v1 * Capsella rubella JGI v1.0 * Capsicum annuum Pepper Genome v2.0 * Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) * Carica papaya Hawaii Agriculture Research Center * Carica papaya JGI ASGPB0.4 * Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) (felCat4) * Cat Mar. 2006 (Broad/felCat3) (felCat3) * Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) * Cat Nov. 2017 (Felis catus, domestic cat): felCat9 * Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) (felCat5) * Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1) * Caulobacter crescentus CB15 (caulCres) * Caulobacter sp. K31 (16306) * Cenchrus americanus v1.0 * CentromereY 2013 GrCh38 (centromeres1) * Chenopodium quinoa JGI v1.0 * Chicken (Gallus gallus): galGal6 * Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) * Chicken Feb. 2004 (WUGSC 1.0/galGal2) (galGal2) * Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) * Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4) * Chicken Oct. 2021 (bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) * Chimp Feb. 2011 (CSAC 2.1.4/panTro4) (panTro4) * Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6) * Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) * Chimp May 2016 (Pan_tro 3.0/panTro5) (panTro5) * Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) * Chimp Oct. 2010 (CGSC 2.1.3/panTro3) (panTro3) * Chinchilla May 2012 (ChiLan1.0/chiLan1) (chiLan1) * Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) * Chinese hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) * Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) * Chinese hamster Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) * Chinese pangolin Aug 2014 (M_pentadactyla-1.1.1/manPen1) (manPen1) * Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) (pelSin1) * Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1) (tupChi1) * Chlamydia muridarum Nigg (229) * Chlamydia trachomatis 434/Bu (28583) * Chlamydia trachomatis A/HAR-13 (13885) * Chlamydia trachomatis D/UW-3/CX (chlaTrac) * Chlamydia trachomatis L2b/UCH-1/proctitis (28585) * Chlamydomonas reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6 * Chlamydomonas reinhardtii JGI v5.5 * Chlamydophila abortus S26/3 (355) * Chlamydophila caviae GPIC (228) * Chlamydophila felis Fe/C-56 (370) * Chlamydophila pneumoniae AR39 (247) * Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029) * Chlamydophila pneumoniae J138 (257) * Chlamydophila pneumoniae TW-183 (420) * Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) * Chlorobium phaeobacteroides DSM 266 (12609) * Chlorobium tepidum TLS (chloTepi_TLS) * Chloroflexus aurantiacus J-10-fl (59) * Chromobacterium violaceum ATCC 12472 (chroViol) * Chromohalobacter salexigens DSM 3043 (chroSale_DSM3043) * Chuck-will's-widow Jun 2014 (ASM70074v1/capCar1) (capCar1) * Cicer arietinum LIS v1.0 * Citrobacter koseri ATCC BAA-895 (12716) * Citrullus lanatus Cucurbit Genomics Database * Citrullus lanatus Cucurbit Genomics Database v1.0 * Citrus clementina JGI v1.0 * Citrus sinensis JGI v1 assembly and v1.0 annotation * Clavibacter michiganensis subsp. michiganensis NCPPB 382 (clavMich_NCPPB_382) * Clavibacter michiganensis subsp. sepedonicus (184) * Clostridium acetobutylicum ATCC 824 (77) * Clostridium beijerinckii NCIMB 8052 (12637) * Clostridium botulinum A str. ATCC 19397 (19517) * Clostridium botulinum A str. ATCC 3502 (193) * Clostridium botulinum A str. Hall (19521) * Clostridium botulinum A3 str. Loch Maree (28507) * Clostridium botulinum B1 str. Okra (28505) * Clostridium botulinum F str. Langeland (19519) * Clostridium difficile 630 (78) * Clostridium kluyveri DSM 555 (19065) * Clostridium novyi NT (16820) * Clostridium perfringens ATCC 13124 (304) * Clostridium perfringens SM101 (12521) * Clostridium perfringens str. 13 (79) * Clostridium phytofermentans ISDg (16184) * Clostridium tetani E88 (81) * Clostridium thermocellum ATCC 27405 (314) * Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) * Coffea canephora Coffee Genome Hub v1 * Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) * Colwellia psychrerythraea 34H (colwPsyc_34H) * Common cuckoo Jun 2014 (ASM70932v1/cucCan1) (cucCan1) * Corchorus olitorius GenBank v1.0 * Corynebacterium diphtheriae NCTC 13129 (87) * Corynebacterium efficiens YS-314 (coryEffi_YS_314) * Corynebacterium glutamicum ATCC 13032 (13760) * Corynebacterium glutamicum ATCC 13032 (307) * Corynebacterium glutamicum R (19193) * Corynebacterium jeikeium K411 (13967) * Cow Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) * Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) * Cow Aug. 2009 (UMD3.1) (bosTauMd3) * Cow Mar. 2005 (Baylor 2.0/bosTau2) (bosTau2) * Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) (bosTau6) * Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) * Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) (bosTau7) * Coxiella burnetii Dugway 5J108-111 (16721) * Coxiella burnetii RSA 331 (16791) * Coxiella burnetii RSA 493 (coxiBurn) * Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) * Crowned crain Jun 2014 (ASM70989v1/balPav1) (balPav1) * Cuckoo roller May 2014 (ASM69178v1/lepDis1) (lepDis1) * Cucumis melo Melonomics v3.5 * Cucumis sativus L. JGI v1.0 * Cytophaga hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) * D. albomicans 21 May 2012 (DroAlb_1.0/droAlb1) (droAlb1) * D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2) * D. ananassae Feb. 2006 (droAna3) * D. ananassae July 2004 (TIGR/droAna1) (droAna1) * D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) * D. bipectinata 04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) * D. elegans 04 Mar 2013 (Dele_2.0/droEle2) (droEle2) * D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1) * D. erecta Feb. 2006 (droEre2) * D. eugracilis 04 Mar 2013 (Deug_2.0/droEug2) (droEug2) * D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2) (droFic2) * D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) * D. grimshawi Feb. 2006 (droGri2) * D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2) (droKik2) * D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) * D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3) * D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (dm6) * D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) * D. miranda 19 Apr 2013 (DroMir_2.2/droMir2) (droMir2) * D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1) * D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2) * D. mojavensis Feb. 2006 (droMoj3) * D. persimilis Oct. 2005 (Broad/droPer1) (droPer1) * D. pseudoobscura (dp4) (dp4) * D. pseudoobscura 11 Apr 2013 (Dpse_3.0/droPse3) (droPse3) * D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2) * D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) * D. rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) * D. sechellia Oct. 2005 (Broad/droSec1) (droSec1) * D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1) * D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) * D. takahashii 04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) * D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2) * D. virilis Feb. 2006 (droVir3) * D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1) * D. willistoni 03 Aug 2006 (dwil_caf1/droWil2) (droWil2) * D. willistoni Feb. 2006 (droWil1) * D. yakuba 27 Jun 2006 (dyak_caf1/droYak3) (droYak3) * D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1) * D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) * Dalmatian pelican May 2014 (ASM68737v1/pelCri1) (pelCri1) * Daucus carota JGI v2.0 * David's myotis (bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) * Dechloromonas aromatica RCB (dechArom_RCB) * Deer Tick (Ixodes scapularis) (IscaW1) * Dehalococcoides ethenogenes 195 (dehaEthe_195) * Dehalococcoides sp. BAV1 (15770) * Dehalococcoides sp. CBDB1 (15604) * Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300) * Deinococcus radiodurans R1 (deinRadi) * Delftia acidovorans SPH-1 (17413) * Desulfitobacterium hafniense Y51 (desuHafn_Y51) * Desulfococcus oleovorans Hxd3 (18007) * Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) * Desulfotomaculum reducens MI-1 (desuRedu_MI_1) * Desulfovibrio desulfuricans G20 (329) * Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) * Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) * Dichelobacter nodosus VCS1703A (dichNodo_VCS1703A) * Dinoroseobacter shibae DFL 12 (17417) * Dog July 2004 (Broad/canFam1) (canFam1) * Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) * Dog May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) * Dog May 2005 (Broad/canFam2) (canFam2) * Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) * Dog Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) * Dolphin Feb. 2008 (Broad/turTru1) (turTru1) * Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2) * Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) * Downy woodpecker Jun 2014 (ASM69900v1/picPub1) (picPub1) * Ebola virus 49 sequences: 5 Ebola, 2 Marburg strains (eboVir2) * Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1) * Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) * Ecoref Feb. 2013 (ecoRef3/ecoRef3) (ecoRef3) * Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4) * Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) * Ecoref Jan. 2013 (ecoRef2/ecoRef2) (ecoRef2) * Ehrlichia canis str. Jake (10694) * Ehrlichia chaffeensis str. Arkansas (325) * Ehrlichia ruminantium str. Gardel (13356) * Ehrlichia ruminantium str. Welgevonden (13355) * Ehrlichia ruminantium str. Welgevonden (ehrlRumi_WELGEVONDEN) * Elaeis guineensis EG5.1 * Elaeis guineensis NCBI Genome v1.0 * Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) * Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3) * Elephant May 2005 (Broad/loxAfr1) (loxAfr1) * Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) * Emperor penguin 06 Jun 2014 (ASM69914v1/aptFor1) (aptFor1) * Enterobacter sakazakii ATCC BAA-894 (12720) * Enterobacter sp. 638 (ente638) * Enterococcus faecalis V583 (enteFaec_V583) * Erythranthe guttata JGI v2.0 * Erythrobacter litoralis HTCC2594 (erytLito_HTCC2594) * Escherichia coli 536 (16235) * Escherichia coli APEC O1 (eschColi_APEC_O1) * Escherichia coli C str. ATCC 8739 (18083) * Escherichia coli CFT073 (eschColi_CFT073) * Escherichia coli DH10B (20079) * Escherichia coli E24377A (13960) * Escherichia coli EC4115 (eschColi_EC4115) * Escherichia coli HS (13959) * Escherichia coli K12 (eschColi_K12) * Escherichia coli O157:H7 EDL933 (259) * Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) * Escherichia coli SECEC SMS-3-5 (19469) * Escherichia coli TW14359 (eschColi_TW14359) * Escherichia coli UTI89 (16259) * Escherichia coli W3110 (16351) * Euarchontoglires Apr. 24. 2006 (UCSC Recon/euaGli13) (euaGli13) * Eucalyptus grandis JGI assembly v1.0, annotation v1.1 * Eucalyptus grandis JGI v2.0 * European sea bass Apr 2014 (seabass_V1.0/dicLab1) (dicLab1) * Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13) (eutHer13) * Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) * Ferret Apr. 2011 (MusPutFur1.0/musFur1) (musFur1) * Fervidobacterium nodosum Rt17-B1 (16719) * Finegoldia magna ATCC 29328 (18981) * Fission Yeast (S. pombe) (Schizosaccharomyces_pombe_1.1) * Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1) (sebRub1) * Flavobacterium johnsoniae UW101 (flavJohn_UW101) * Flavobacterium psychrophilum JIP02/86 (19979) * Foshan strain genomic contigs sequences, AaloF1 assembly. * Fragaria vesca JGI v1.1 * Fragaria vesca Strawberry Genome 1.0 * Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) * Francisella tularensis subsp. holarctica (16421) * Francisella tularensis subsp. holarctica FTA (20197) * Francisella tularensis subsp. holarctica OSU18 (17265) * Francisella tularensis subsp. novicida U112 (16088) * Francisella tularensis subsp. tularensis FSC198 (17375) * Francisella tularensis subsp. tularensis SCHU S4 (franTula_TULARENSIS) * Francisella tularensis subsp. tularensis WY96-3418 (18459) * Frankia alni ACN14a (17403) * Frankia sp. CcI3 (franCcI3) * Frankia sp. EAN1pec (13915) * Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) * Fugu Oct. 2004 (JGI 4.0/fr2) (fr2) * Fugu Oct. 2011 (FUGU5/fr3) (fr3) * Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (fusoNucl) * GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2) * GRCh38.p2 Dec 2014 (hg38Patch2) * Garter snake Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) * Geobacillus kaustophilus HTA426 (geobKaus_HTA426) * Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2) * Geobacter metallireducens GS-15 (geobMeta_GS15) * Geobacter sulfurreducens PCA (geobSulf) * Geobacter uraniireducens Rf4 (geobUran_RF4) * Gharial APR 2009 (preliminary/gavGan0) (gavGan0) * Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) (nomLeu1) * Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) * Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) (nomLeu3) * Glires Apr. 24. 2006 (UCSC Recon/gliRes13) (gliRes13) * Gloeobacter violaceus PCC 7421 (gloeViol) * Gluconacetobacter diazotrophicus PAl 5 (377) * Gluconobacter oxydans 621H (glucOxyd_621H) * Glycine max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly * Glycine max JGI Wm82.a2.v1 * Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1) * Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) * Golden hamster Mar 2013 (MesAur1.0/mesAur1) (mesAur1) * Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) (rhiRox1) * Golden-collared manakin May 2014 (ASM69201v1/manVit1) (manVit1) * Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2) * Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) * Gorilla Dec 2014 (gorGor4.1/gorGor4) (gorGor4) * Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5) * Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) * Gorilla Oct. 2008 (Sanger 0.1/gorGor1) (gorGor1) * Gossypium raimondii JGI annotation v2.1 on assembly v2.0 * Gossypium raimondii JGI v2.1 * Gramella forsetii KT0803 (gramFors_KT0803) * Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) * Grch37.p10 Sep. 2012 (GRCh37.p10/hg19Patch10) (hg19Patch10) * Grch37.p5 Jun. 2011 (GRCh37.p5/hg19Patch5) (hg19Patch5) * Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9) (hg19Patch9) * Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) * Great cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) * Greater horseshoe bat Sep. 2013 (ASM46549v1/rhiFer1) (rhiFer1) * Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) (chlSab2) * Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1) * Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) * Guppy Apr. 2014 (Guppy_female_1.0/poeRet1) (poeRet1) * H. contortus Dec. 2009 (WormBase WS210/haeCon1) (haeCon1) * Haemophilus ducreyi 35000HP (38) * Haemophilus influenzae 86-028NP (11752) * Haemophilus influenzae PittEE (16400) * Haemophilus influenzae PittGG (16401) * Haemophilus influenzae Rd KW20 (haemInfl_KW20) * Haemophilus somnus 129PT (haemSomn_129PT) * Haemophilus somnus 2336 (388) * Hahella chejuensis KCTC 2396 (haheChej_KCTC_2396) * Haloarcula marismortui ATCC 43049 (halMar1) * Halobacterium salinarum R1 (106) * Halobacterium sp. NRC-1 (haloHalo1) * Haloquadratum walsbyi DSM 16790 (haloWals1) * Halorhodospira halophila SL1 (haloHalo_SL1) * Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) * Head Louse (Pediculus humanus) (PhumU1) * Hedgehog June 2006 (Broad/eriEur1) (eriEur1) * Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) * Helicobacter acinonychis str. Sheeba (heliAcin_SHEEBA) * Helicobacter hepaticus ATCC 51449 (heliHepa) * Helicobacter pylori 26695 (heliPylo_26695) * Helicobacter pylori HPAG1 (heliPylo_HPAG1) * Helicobacter pylori J99 (heliPylo_J99) * Heliobacterium modesticaldum Ice1 (13427) * Herminiimonas arsenicoxydans (hermArse) * Herpetosiphon aurantiacus ATCC 23779 (16523) * Hevea brasiliensis NCBI Genomes v1 * Hg19 lgg inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) * Hlaref Apr. 2012 (hlaRefV1/hlaRef1) (hlaRef1) * Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2) * Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) * Hoatzin May 2014 (ASM69207v1/opiHoa1) (opiHoa1) * Hominidae Apr. 24. 2006 (UCSC Recon/homIni13) (homIni13) * Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) * Homo Sapiens (GRCh38) Transcriptome + ERCC * Homo sapiens (hg19 with mtDNA replaced with rCRS) (Homo_sapiens_nuHg19_mtrCRS) * Homo sapiens b37 (hg_g1k_v37) * Homo sapiens hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) * Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1) (corCor1) * Hordeum vulgare Ensembl Genomes ASM32608v1 * Hordeum vulgare IBC PGSB v2 * Hordeum vulgare MIPS * Horse Jan. 2007 (Broad/equCab1) (equCab1) * Horse Jan. 2018 (EquCab3.0/equCab3) * Horse Sep. 2007 (Broad/equCab2) (equCab2) * Houbara bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) * Human (Homo sapiens): hg19 Full * Human Apr. 2003 (NCBI33/hg15) (hg15) * Human CHM13 2.0 (T2T Consortium) Jan. 2022 * Human Dec. 2013 (GRCh38/hg38) (hg38) * Human Jan. 2021 isolate CHM13 (T2T Consortium) female * Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) * Human July 2003 (NCBI34/hg16) (hg16) * Human Mar. 2006 (NCBI36/hg18) (hg18) * Human May 2004 (NCBI35/hg17) (hg17) * Human herpesvirus 1 (15217) * Human repeats Nov. 2012 (1/repeats2) (repeats2) * Hydra magnipapillata str. 105 (Hydra_JCVI) * Hyperthermus butylicus DSM 5456 (hypeButy1) * Hyphomonas neptunium ATCC 15444 (hyphNept_ATCC15444) * Idiomarina loihiensis L2TR (idioLoih_L2TR) * Ignicoccus hospitalis KIN4/I (13914) * Indian false vampire Sep. 2013 (ASM46534v1/megLyr1) (megLyr1) * Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) * J. Craig Venter Sep. 2007 (HuRef/venter1) (venter1) * Jannaschia sp. CCS1 (jannCCS1) * Janthinobacterium sp. Marseille (16549) * Japanese eel 18 Mar-2014 (japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1) (angJap1) * Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) * Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1) * Killdeer Aug 2014 (ASM70802v2/chaVoc2) (chaVoc2) * Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) * Killer whale Jan 2013 (Oorc_1.1/orcOrc1) (orcOrc1) * Kineococcus radiotolerans SRS30216 (10689) * Kirref Apr. 2011 (kirRef/kirRef) (kirRef) * Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2) (kirRefV2) * Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) * Kirrefv4 Apr. 2011 (kirRefV4/kirRefV4) (kirRefV4) * Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5) * Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) * Korean Man (Homo_sapiens_AK1) * Lactobacillus acidophilus NCFM (82) * Lactobacillus brevis ATCC 367 (404) * Lactobacillus casei ATCC 334 (402) * Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (16871) * Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (403) * Lactobacillus gasseri ATCC 33323 (84) * Lactobacillus helveticus DPC 4571 (17811) * Lactobacillus johnsonii NCC 533 (9638) * Lactobacillus plantarum WCFS1 (lactPlan) * Lactobacillus reuteri F275 (15766) * Lactobacillus sakei subsp. sakei 23K (13435) * Lactobacillus salivarius UCC118 (lactSali_UCC118) * Lactococcus lactis subsp. cremoris MG1363 (18797) * Lactococcus lactis subsp. cremoris SK11 (401) * Lactococcus lactis subsp. lactis Il1403 (lactLact) * Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) (petMar3) * Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1) * Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) * Lancelet Apr. 2008 (JGI v2.0/braFlo2) (braFlo2) * Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1) * Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) * Lawsonia intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) * Legionella pneumophila str. Corby (17491) * Legionella pneumophila str. Lens (13126) * Legionella pneumophila str. Paris (13127) * Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (legiPneu_PHILADELPHIA) * Leifsonia xyli subsp. xyli str. CTCB07 (leifXyli_XYLI_CTCB0) * Leishmania major 2005 (lMaj5) * Leptospira borgpetersenii serovar Hardjo-bovis JB197 (16148) * Leptospira borgpetersenii serovar Hardjo-bovis L550 (16146) * Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (10687) * Leptospira interrogans serovar Lai str. 56601 (leptInte) * Leptothrix cholodnii SP-6 (20039) * Lesser Egyptian jerboa May 2012 (JacJac1.0/jacJac1) (jacJac1) * Leuconostoc citreum KM20 (16062) * Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) * Limpet Jul. 2013 (lotGig0/lotGig0) (lotGig0) * Listeria innocua Clip11262 (listInno) * Listeria monocytogenes EGD-e (276) * Listeria monocytogenes str. 4b F2365 (85) * Listeria welshimeri serovar 6b str. SLCC5334 (13443) * Little egret May 2014 (ASM68718v1/egrGar1) (egrGar1) * Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) * Lizard May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) * Lotus japonicus Kazusa 2.5 * Lysinibacillus sphaericus C3-41 (19619) * M. domestica 22 Apr 2013 (Musca_domestica-2.0.2/musDom2) (musDom2) * M. hapla Sep. 2008 (M. hapla VW9 WS210/melHap1) (melHap1) * M. incognita Feb. 2008 (M. incognita WS210/melInc1) (melInc1) * MMTV Nov. 2009 (MMTV/mmtv) (mmtv) * Macaca fascicularis Jun 2013 (macFas5) * Magnetococcus sp. MC-1 (magnMC1) * Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) * Maize (Zea mays) (Zea_mays_B73_RefGen_v2) * Malayan flying lemur Jun. 2014 (G_variegatus-3.0.2/galVar1) (galVar1) * Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) (anaPla1) * Malus domestica IASMA * Malus domestica Penguin Genomics v2 * Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) * Manihot esculenta Cassava4 * Manihot esculenta JGI v6.1 * Mannheimia succiniciproducens MBEL55E (mannSucc_MBEL55E) * Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1) * Marchantia polymorpha JGI v3.1 * Maricaulis maris MCS10 (mariMari_MCS10) * Marinobacter aquaeolei VT8 (mariAqua_VT8) * Marinomonas sp. MWYL1 (17445) * Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1) * Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3) * Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4) (calJac4) * Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) * Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2) * Medicago truncatula JCVI 4.0 * Medicago truncatula JGI Mt4.0v1 * Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) (geoFor1) * Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) * Mesoplasma florum L1 (mesoFlor_L1) * Mesorhizobium loti MAFF303099 (mesoLoti) * Mesorhizobium sp. BNC1 (10690) * Metallosphaera sedula DSM 5348 (metaSedu) * Methanobrevibacter smithii ATCC 35061 (methSmit1) * Methanocaldococcus jannaschii DSM 2661 (methJann1) * Methanococcoides burtonii DSM 6242 (methBurt2) * Methanococcus aeolicus Nankai-3 (methAeol1) * Methanococcus maripaludis C5 (methMari_C5_1) * Methanococcus maripaludis C6 (19639) * Methanococcus maripaludis C7 (methMari_C7) * Methanococcus maripaludis S2 (metMar1) * Methanococcus vannielii SB (methVann1) * Methanocorpusculum labreanum Z (methLabrZ_1) * Methanoculleus marisnigri JR1 (mculMari1) * Methanopyrus kandleri AV19 (methKand1) * Methanosaeta thermophila PT (methTherPT1) * Methanosarcina acetivorans C2A (metAce1) * Methanosarcina barkeri str. Fusaro (methBark1) * Methanosarcina mazei Go1 (methMaze1) * Methanosphaera stadtmanae DSM 3091 (methStad1) * Methanospirillum hungatei JF-1 (methHung1) * Methanothermobacter thermautotrophicus str. Delta H (methTher1) * Methylibium petroleiphilum PM1 (methPetr_PM1) * Methylobacillus flagellatus KT (methFlag_KT) * Methylobacterium extorquens PA1 (18637) * Methylobacterium radiotolerans JCM 2831 (18817) * Methylobacterium sp. 4-46 (18809) * Methylococcus capsulatus str. Bath (methCaps_BATH) * Mexican tetra (cavefish) Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) (astMex1) * Mhcref Apr. 2011 (mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) * Mhcref Jan. 2011 (mhcRefV1/mhcRef) (mhcRef) * Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) * Mhcref July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) * Mhcref July 2011 (mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) * Mhcref July 2011 (mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) * Mhcref July 2011 (mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) * Mhcref July 2011 (mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) * Mhcref July 2011 (mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) * Mhcref July 2011 (mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) * Mhcref July 2011 (mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) * Mhcref July 2011 (mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) * Mhcref July 2011 (mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) * Mhcref July 2011 (mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) * Mhcref June 2011 (mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) * Mhcref June 2011 (mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) * Mhcref June 2011 (mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) * Mhcref Mar. 2012 (mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) * Mhcref Mar. 2012 (mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) * Mhcref Mar. 2012 (mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) * Mhcref Oct. 2011 (mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) * Mhcref Oct. 2011 (mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) * Mhcref Oct. 2011 (mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) * Mhcref Oct. 2011 (mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) * Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) (myoLuc2) * Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1) * Microcystis aeruginosa NIES-843 (27835) * Micromonas commoda JGI v3.0 * Minke whale Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) * Mm10haps Dec. 2011 (Mouse strains/mm10Strains1) (mm10Strains1) * Monkeypox virus MPXV-M5312_HM12_Rivers (MT903340.1/GCF_014621545.1) (mpxvRivers) * Moorella thermoacetica ATCC 39073 (moorTher_ATCC39073) * Mosquito (Aedes aegypti) (AaegL1) * Mosquito (Anopheles gambiae) (AgamP3) * Mosquito (Culex quinquefasciatus) (CpipJ1) * Mouse (Mus Musculus): mm10 Full * Mouse (Mus Musculus): mm39 Full * Mouse Aug. 2005 (NCBI35/mm7) (mm7) * Mouse Feb. 2006 (NCBI36/mm8) (mm8) * Mouse July 2007 (NCBI37/mm9) (mm9) * Mouse May 2004 (mm5) * Mouse lemur Jul. 2007 (Broad/micMur1) (micMur1) * Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) * Musa acuminata Banana Genome v1.0 * Musa acuminata Banana Genome v2.0 * Musa acuminata Genescope-Cirad * Mycobacterium abscessus (15691) * Mycobacterium avium 104 (88) * Mycobacterium avium subsp. paratuberculosis K-10 (91) * Mycobacterium bovis AF2122/97 (89) * Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) * Mycobacterium gilvum PYR-GCK (15760) * Mycobacterium leprae TN (90) * Mycobacterium smegmatis str. MC2 155 (92) * Mycobacterium sp. JLS (16079) * Mycobacterium sp. KMS (16081) * Mycobacterium sp. MCS (15762) * Mycobacterium tuberculosis CDC1551 (223) * Mycobacterium tuberculosis F11 (15642) * Mycobacterium tuberculosis H37Ra (18883) * Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) * Mycobacterium ulcerans Agy99 (16230) * Mycobacterium vanbaalenii PYR-1 (15761) * Mycoplasma agalactiae PG2 (16095) * Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) * Mycoplasma gallisepticum R (409) * Mycoplasma genitalium G37 (mycoGeni) * Mycoplasma hyopneumoniae 232 (13120) * Mycoplasma hyopneumoniae 7448 (10639) * Mycoplasma hyopneumoniae J (10675) * Mycoplasma mobile 163K (10697) * Mycoplasma mycoides subsp. mycoides SC str. PG1 (10616) * Mycoplasma penetrans HF-2 (176) * Mycoplasma pneumoniae M129 (99) * Mycoplasma pulmonis UAB CTIP (100) * Mycoplasma synoviae 53 (10676) * Myxococcus xanthus DK 1622 (myxoXant_DK_1622) * Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) (hetGla2) * Naked mole-rat Jul. 2011 (BGI HetGla_1.0/hetGla1) (hetGla1) * Nanoarchaeum equitans Kin4-M (nanEqu1) * Natronomonas pharaonis DSM 2160 (natrPhar1) * Neisseria gonorrhoeae FA 1090 (neisGono_FA1090_1) * Neisseria meningitidis 053442 (16393) * Neisseria meningitidis FAM18 (neisMeni_FAM18_1) * Neisseria meningitidis MC58 (neisMeni_MC58_1) * Neisseria meningitidis Z2491 (neisMeni_Z2491_1) * Nelumbo nucifera LOTUS-DB v1.1 * Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) * Nile tilapia Jan. 2011 (Broad oreNil1.0/oreNil1) (oreNil1) * Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) (oreNil2) * Nitratiruptor sp. SB155-2 (18963) * Nitrobacter hamburgensis X14 (13473) * Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255) * Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) * Nitrosomonas europaea ATCC 19718 (nitrEuro) * Nitrosomonas eutropha C91 (13913) * Nitrosopumilus maritimus SCM1 (19265) * Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) * Nocardia farcinica IFM 10152 (nocaFarc_IFM10152) * Nocardioides sp. JS614 (nocaJS61) * Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) * Northern carmine bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) * Northern fulmar May 2014 (ASM69083v1/fulGla1) (fulGla1) * Northern pike Jul 2014 (EsoLuc1.0/esoLuc1) (esoLuc1) * Nostoc sp. PCC 7120 (nostSp) * Notyet Oct. 2011 (notYet1/calMil0) (calMil0) * Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444) * Oceanobacillus iheyensis HTE831 (oceaIhey) * Ochrobactrum anthropi ATCC 49188 (19485) * Oenococcus oeni PSU-1 (oenoOeni_PSU_1) * Oikopleura dioica (od01) * Onion yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) * Opossum Jan. 2006 (Broad/monDom4) (monDom4) * Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1) * Opossum Oct. 2006 (Broad/monDom5) (monDom5) * Orangutan Jan. 2018 (Susie_PABv2/ponAbe3) (ponAbe3) * Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2) * Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) * Oropetium thomaeum JGI v1.0 * Oryza brachyantha Ensembl Plants v1.4b * Oryza sativa ssp. indica 9311_BGF_2005 * Oryza sativa ssp. indica MBKBASE v1.0 * Oryza sativa ssp. japonica JGI v7.0 * Oryza sativa ssp. japonica MSU RGAP 7 * Ostreococcus lucimarinus JGI 2.0 * Ostreococcus lucimarinus JGI v2.0 assembly and annotation * Ostrich 06 Jun-2014 (ASM69896v1/strCam1) (strCam1) * P. falciparum Plasmodium falciparum (?/falciparum) (falciparum) * P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2) (priPac2) * P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) * Pacific walrus Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) * Painted turtle Dec. 2011 (v3.0.1/chrPic1) (chrPic1) * Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2) * Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) * Parabacteroides distasonis ATCC 8503 (13485) * Paracoccus denitrificans PD1222 (paraDeni_PD1222) * Parnell's mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) * Parrot Jan. 2013 (AV1/amaVit1) (amaVit1) * Parvibaculum lavamentivorans DS-1 (17639) * Pasteurella multocida subsp. multocida str. Pm70 (pastMult) * Pectobacterium atrosepticum SCRI1043 (erwiCaro_ATROSEPTICA) * Pediococcus pentosaceus ATCC 25745 (pediPent_ATCC25745) * Pelobacter carbinolicus DSM 2380 (peloCarb) * Pelobacter propionicus DSM 2379 (13384) * Pelodictyon luteolum DSM 273 (peloLute_DSM273) * Pelotomaculum thermopropionicum SI (peloTher_SI) * Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) (falPer1) * Petrotoga mobilis SJ95 (17679) * Petunia axillaris Sol Genomics v1.6.2 * Phalaenopsis equestris Genomics v1.0 * Photobacterium profundum SS9 (photProf_SS9) * Photorhabdus luminescens subsp. laumondii TTO1 (photLumi) * Phyllostachys edulis NCGR v1.0 * Physcomitrella patens JGI assembly release v1.1 and COSMOSS annotation v1.6 * Physcomitrella patens JGI v3.3 * Physcomitrella patens assembly version 1.2b (2014/03/27): pp1.2b * Picrophilus torridus DSM 9790 (picrTorr1) * Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) (susScr3) * Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11) * Pig May 2010 (Sscrofa9.58) * Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2) * Pika Jul. 2008 (Broad/ochPri2) (ochPri2) * Pika May 2012 (OchPri3.0/ochPri3) (ochPri3) * Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12) (plasFalc3D7V12) * Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) * Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1) * Polar bear 09 May-2014 (UrsMar_1.0/ursMar1) (ursMar1) * Polaromonas naphthalenivorans CJ2 (13418) * Polaromonas sp. JS666 (polaJS66) * Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) * Poplar (Populus trichocarpa) (Ptrichocarpa_156) * Populus trichocarpa JGI assembly release v3.0, annotation v3.0 * Populus trichocarpa JGI v3.1 * Porphyromonas gingivalis W83 (porpGing_W83) * Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1) * Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) * Primate Apr. 24. 2006 (UCSC Recon/priMat13) (priMat13) * Princess of Burundi May 2011 (NeoBri1.0/neoBri1) (neoBri1) * Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1) * Prochlorococcus marinus str. AS9601 (13548) * Prochlorococcus marinus str. MIT 9211 (13551) * Prochlorococcus marinus str. MIT 9215 (18633) * Prochlorococcus marinus str. MIT 9301 (15746) * Prochlorococcus marinus str. MIT 9303 (13496) * Prochlorococcus marinus str. MIT 9312 (13910) * Prochlorococcus marinus str. MIT 9313 (220) * Prochlorococcus marinus str. MIT 9515 (13617) * Prochlorococcus marinus str. NATL1A (15660) * Prochlorococcus marinus str. NATL2A (13911) * Prochlorococcus marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) * Prochlorococcus marinus subsp. pastoris str. CCMP1986 (213) * Propionibacterium acnes KPA171202 (propAcne_KPA171202) * Prosthecochloris vibrioformis DSM 265 (12607) * Prunus persica JGI release v1.0 * Prunus persica JGI v2.1 * Przewalski horse Jun 2014 (Burgud/equPrz1) (equPrz1) * Pseudoalteromonas atlantica T6c (13454) * Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) * Pseudomonas aeruginosa PA7 (16720) * Pseudomonas aeruginosa PAO1 (pseuAeru) * Pseudomonas aeruginosa UCBPP-PA14 (386) * Pseudomonas entomophila L48 (16800) * Pseudomonas fluorescens Pf-5 (327) * Pseudomonas fluorescens PfO-1 (12) * Pseudomonas mendocina ymp (17457) * Pseudomonas putida F1 (13909) * Pseudomonas putida GB-1 (17629) * Pseudomonas putida KT2440 (267) * Pseudomonas putida W619 (17053) * Pseudomonas stutzeri A1501 (16817) * Pseudomonas syringae pv. phaseolicola 1448A (12416) * Pseudomonas syringae pv. syringae B728a (323) * Pseudomonas syringae pv. tomato str. DC3000 (359) * Psychrobacter arcticus 273-4 (psycArct_273_4) * Psychrobacter cryohalolentis K5 (13920) * Psychrobacter sp. PRwf-1 (15759) * Psychromonas ingrahamii 37 (psycIngr_37) * Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) * Purple Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) * Pyrobaculum aerophilum str. IM2 (pyrAer1) * Pyrobaculum arsenaticum DSM 13514 (pyroArse1) * Pyrobaculum calidifontis JCM 11548 (pyroCali1) * Pyrobaculum islandicum DSM 4184 (pyroIsla1) * Pyrococcus abyssi GE5 (pyrAby1) * Pyrococcus furiosus DSM 3638 (pyrFur2) * Pyrococcus horikoshii OT3 (pyrHor1) * Pyrus bretschneideri Pear Genome Project v1.0 * Rabbit Apr. 2009 (oryCun2) * Rabbit May 2005 (Broad/oryCun1) (oryCun1) * Ralstonia eutropha H16 (13603) * Ralstonia eutropha JMP134 (ralsEutr_JMP134) * Ralstonia metallidurans CH34 (250) * Ralstonia solanacearum GMI1000 (ralsSola) * Rat (Rattus norvegicus): rn5 * Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) * Rat June 2003 (Baylor 3.1/rn3) (rn3) * Rat Nov. 2004 (Baylor 3.4/rn4) (rn4) * Rattus norvegicus Nov. 2020 (mRatBN7.2/rn7) * Red Flour Beetle (Tribolium castaneum) (Tcas_3.0) * Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1) * Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) * Red-throated loon May 2014 (ASM69087v1/gavSte1) (gavSte1) * Renibacterium salmoninarum ATCC 33209 (19227) * RepBase Jun. 2012 (hg19/repBase0) (repBase0) * RepBase Sep. 2012 (17.08/repBase1) (repBase1) * Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1) (resEbo1) * Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) * Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2) * Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7) (rheMac7) * Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) * Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) (rheMac3) * Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1) (bucRhi1) * Rhizobium etli CFN 42 (rhizEtli_CFN_42) * Rhizobium leguminosarum bv. viciae 3841 (344) * Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) * Rhodobacter sphaeroides ATCC 17025 (15755) * Rhodobacter sphaeroides ATCC 17029 (15754) * Rhodococcus sp. RHA1 (rhodRHA1) * Rhodoferax ferrireducens T118 (13908) * Rhodopirellula baltica SH 1 (pireSp) * Rhodopseudomonas palustris BisA53 (15751) * Rhodopseudomonas palustris BisB18 (15750) * Rhodopseudomonas palustris BisB5 (15749) * Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) * Rhodopseudomonas palustris HaA2 (15747) * Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170) * Rice (Oryza sativa ssp. japonica var. Nipponbare) (oryza_sativa_japonica_nipponbare_IRGSP4.0) * Ricinus communis JCVI 1.0 * Ricinus communis JGI v0.1 * Rickettsia akari str. Hartford (12953) * Rickettsia bellii OSU 85-389 (17237) * No matching references found. * List is empty. Choose local file Paste/Fetch data Start Build Pause Reset Close Insert tabular source data to extract collection files and metadata. Upload type: Datasets * Collections * Datasets * No matching s found. * List is empty. 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