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Click here for the Legacy PeanutBase site.
PeanutBase
Genetic and genomic data to enable more rapid crop improvement in peanut.
 * Home
 * Species
    * hypogaea (peanut: cultivated tetraploid)
    * duranensis wild: diploid progenitor of A genome
    * ipaensis wild: diploid progenitor of B genome
    * cardenasii wild: diploid
    * stenosperma wild: diploid
      

 * Tools
    * Data Store
    * DSCensor
    * ArachisMine
    * The Peanut Genome
    * Browse A. duranensis
    * Browse A. ipaensis
    * Gene Expression Resources
    * Legumebot
    * Marker-Assisted Selection
    * NIFA PCCGP Project
    * Gene Search Tool
    * Trait Search Tool
    * BLAST
    * Funnotate
    * ArachisPheno
    * GCViT
    * Gene Family Search
    * Genome Context Viewer
    * Germplasm
    * Gigwa
    * JBrowse
    * ZZBrowse

 * Download
 * Community
 * External
 * Contact
 * Help

 * 
 * 
 * 

 * 

 * Home
 * SPECIES(TAXA)
    * hypogaea (peanut: cultivated tetraploid)
    * duranensis wild: diploid progenitor of A genome
    * ipaensis wild: diploid progenitor of B genome
    * cardenasii wild: diploid
    * stenosperma wild: diploid
      

 * Tools
    * Data Store
    * DSCensor
    * ArachisMine
    * The Peanut Genome
    * Browse A. duranensis
    * Browse A. ipaensis
    * Gene Expression Resources
    * Legumebot
    * Marker-Assisted Selection
    * NIFA PCCGP Project
    * Gene Search Tool
    * Trait Search Tool
    * BLAST
    * Funnotate
    * ArachisPheno
    * GCViT
    * Gene Family Search
    * Genome Context Viewer
    * Germplasm
    * Gigwa
    * JBrowse
    * ZZBrowse

 * Download
 * Community
 * Contact
 * Help


 * Home
 * Taxa
   * Arachis (peanut: domesticated and wild)
   * OTHERS (Many special-focus species and collections)
 * Tools
   * Data Store
   * DSCensor
   * ArachisMine
   * The Peanut Genome
   * Browse A. duranensis
   * Browse A. ipaensis
   * Gene Expression Resources
   * Legumebot
   * Marker-Assisted Selection
   * NIFA PCCGP Project
   * Gene Search Tool
   * Trait Search Tool
   * BLAST
   * Funnotate
   * ArachisPheno
   * GCViT
   * Gene Family Search
   * Genome Context Viewer
   * Germplasm
   * Gigwa
   * JBrowse
   * ZZBrowse
 * Download
 * Community
 * Contact
 * Help

 * 
 * Twitter
 * Newsletter
 * GitHub


TOOLS

 * Download / Query
 * Data Store
 * DSCensor
 * ArachisMine

 * Genomes
 * The Peanut Genome
 * Browse A. duranensis
 * Browse A. ipaensis

 * Miscellaneous
 * Gene Expression Resources
 * Legumebot
 * Marker-Assisted Selection
 * NIFA PCCGP Project

 * Search
 * Gene Search Tool
 * Trait Search Tool

 * Sequence Search
 * BLAST
 * Funnotate

 * Visualize / Browse
 * ArachisPheno
 * GCViT
 * Gene Family Search
 * Genome Context Viewer
 * Germplasm
 * Gigwa
 * JBrowse
 * ZZBrowse


ABOUT PEANUTBASE

PeanutBase integrates genetic and genomic information across many Arachis
species including cultivated peanut. Access this information by selecting a
genus under TAXA, or a tool or method under TOOLS, or select DOWNLOAD(DataStore)
via the Data Store. You can also explore most of the data via the rich toolsets
at ArachisMine (also accessed throughout this website).

Taxa - Resources for legumes at various taxonomic levels (species, genera, and
the family as a whole): data sets, genome browsers, pan-gene sets, synteny
visualizations, sequence and keyword search, etc.

Tools - Pan-legume tools: sequence and keyword search, gene families and
phylogenies, synteny visualization, etc. search, etc.

Download(DataStore) - Browse and download data sets from the LIS Data Store.



CITE PEANUTBASE AND THE PEANUT GENOMES

 * Cite PeanutBase
   Sudhansu Dash, Ethalinda K.S. Cannon, Scott R. Kalberer, Andrew D. Farmer and
   Steven B. Cannon. PeanutBase and Other Bioinformatic Resources for Peanut (
   Chapter 8). In Peanuts Genetics, Process ing, and Utilization, edited by H.
   Thomas Stalker and Richard F. Wilson, AOCS Press, 2016, Pages 241-252. (ISBN
   978163067 0382, doi:10.1016/B978-1-63067-038-2.00008-3).
 * Cite peanut genome
   David J. Bertioli, Jerry Jenkins, Josh Clevenger, Olga Dudchenko, Dongying
   Gao, Guillermo Seijo, Soraya C. M. Leal-Bertioli, Long hui Ren, Andrew D.
   Farmer, Manish K. Pandey, Sergio S. Samoluk, Brian Abernathy, Gaurav Agarwal,
   Carolina Ballén-Taborda, Connor Cameron, Jacqueline Campbell, Carolina
   Chavarro, Annapurna Chitikineni, Ye Chu, Sudhansu Dash, Moaine El Baidouri,
   Baozhu Guo, We i Huang, Kyung Do Kim, Walid Korani, Sophie Lanciano,
   Christopher G. Lui, Marie Mirouze, Márcio C. Moretzsohn, Melanie Pham, Jin
   Hee Shin, Kenta Shirasawa, Senjuti Sinharoy, Avinash Sreedasyam, Nathan T.
   Weeks, Xinyou Zhang, Zheng Zheng, Ziqi Sun, Lutz Froen icke, Erez L. Aiden,
   Richard Michelmore, Rajeev K. Varshney, C. Corley Holbrook, Ethalinda K. S.
   Cannon, Brian E. Scheffler, Jane Grimwood, Peggy Ozias-Akins, Steven B.
   Cannon, Scott A. Jackson & Jeremy Schmutz. The genome sequence of segmental
   allotetraploi d peanut Arachis hypogaea. Nature Genetics 51, 877–884 (2019).
   
   Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X,
   Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shir asawa K, Huang W,
   Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Do
   Kim K, Burow MD, Varshney RK, Wan g X, Zhang X, Barkley N, Guimarães PM,
   Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli
   SC, Xun X, Jac kson SA, Michelmore R, Ozias-Akins P. The genome sequences of
   Arachis duranensis and Arachis ipaensis, the diploid ancestors of c ultivated
   peanut. Nature Genetics 48:438–446 (2016). doi: 10.1038/ng.3517. PubMed PMID:
   26901068 .    


FUNDING AND DEVELOPMENT

PaeanutBase is funded by The Peanut Research Foundation (TPRF) and in kind
support from LIS at (NCGR and USDA-ARS). It is developed and hosted by the
National Center for Genome Resources (NCGR) and the USDA-ARS Legume Clade
Database group at Ames, IA.




NEWS

 * (September 2024) Two more duranensis genomes with alignments 13 September
   2024
 * (April 2024) More userguides and improvements 20 April 2024
 * (March 2024) More genome alignments 20 March 2024
 * (February 2024) Stenosperma annotation at PeanutBase 20 February 2024
 * (December 2023) Quality metrics for expression data and userguide update. 08
   November 2023

More News


EVENTS

 * AAGB(2025), Goa, India 23 Mar 2025 - 25 Mar 2025

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