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This website uses cookies to ensure you get the best experience on our website. Learn more Got it! Image.sc Forum Topic Replies Views Activity Related Communities Websites There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory … 2 19136 February 10, 2020 Welcome to the Image.sc Forum! Announcements Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag… 4 12303 April 29, 2020 How to ignore Trackmate CSV Importer programmatically? 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Usage & Issues napari , cellpose , cellpose-napari 8 139 March 17, 2023 Is it possible to get coordinates for segmentation mask generated by felzenszwalb functions? Development scikit-image 5 58 March 17, 2023 JVM not running in Spyder 5.4.1 using PyImageJ Development python , pyimagej , spyder 1 41 March 17, 2023 Fiji runCommand second argument for Sort? Development fiji , imagej 1 21 March 17, 2023 About the cell segmentation by using cellpose 2.2 Image Analysis imagej1 , bio-formats , cellprofiler , imagej , python , qupath 1 22 March 17, 2023 How to change color of tracked particles in mosaic Image Analysis fiji , mosaic 3 30 March 17, 2023 BioImage Model Zoo would like to join image.sc as community partner Websites community-partner , bioimageio 0 34 March 15, 2023 How to draw curves by the obtained x-y coordinates on the initial image Image Analysis fiji , imagej 5 79 March 16, 2023 Estimate Quantitative properties of fibers (in battery separators) using Python Image Analysis python 2 28 March 16, 2023 Export problem with cytomap Usage & Issues qupath , cytomap 16 407 March 16, 2023 A question in intensity measurement Image Analysis qupath 3 22 March 16, 2023 Automated Draw Lines to closest detected cell of specified class Image Analysis qupath 9 25 March 16, 2023 Bounding box object detection in deepImageJ Image Analysis fiji , deepimagej 2 54 March 16, 2023 Pycromanger: issue using MDA Acquisitions (unclosed file warning and metadata) Usage & Issues python , micro-manager 1 25 March 16, 2023 Check Orientation in brainreg Usage & Issues registration , napari , brainglobe , brainreg 0 27 March 16, 2023 Convex hull units? SNT Image Analysis neuroanatomy , convexhull , snt 0 8 March 16, 2023 Command not Recognized in Macro Image Analysis fiji , contrast , imagej , macro , segmentation 2 27 March 16, 2023 next page → * Home * Categories * FAQ/Guidelines * Terms of Service * Privacy Policy Powered by Discourse, best viewed with JavaScript enabled Skip to main content * zulipchatlight * relatedforums Sign UpLog In * Community * Everything * Users * About * FAQ More Categories * Announcements * Development * Image Analysis * Job Opportunities * Usage & Issues * All categories Tags * imagej * fiji * cellprofiler * qupath * macro * All tags Community Partners All Topics AGAVE AICSImageIO Aydin BIAFLOWS BIII BiofilmQ Bio-Formats BoneJ BrainGlobe Cellpose CellProfiler CLIJ CytoMAP Cytomine DAIM DeepLabCut Fiji FLIMLib GerBI Icy IDR ilastik ImageJ ImageJ2 ImgLib2 ImJoy JIPipe Mars MCMICRO MIA MIB μManager MoBIE MorphoGraphX MorphoNet napari NEUBIAS OME OMERO OmeSliCC OpenIRIS OpenSPIM Orbit Piximi PYME Python-Microscope QUAREP-LiMi QuPath SCIFIO scikit-image sciview SR-Tesseler StarDist starfish TissUUmaps vedo webKnossos ZeroCostDL4Mic Your Icon Here Dormant Partners -------------------------------------------------------------------------------- SPONSORED BY RELATED COMMUNITIES 1. all categories 2. all tags 3. all 4. * Latest * Top * Categories Topic Replies Views Activity Related Communities Websites There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory … read more 2 19.1k Feb 2020 Welcome to the Image.sc Forum! Announcements Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag… read more 4 12.3k Aug 2019 How to ignore Trackmate CSV Importer programmatically? Usage & Issues imagej fiji trackmate trackmatecsvimporter 0 3 25m Napari - napari-ome-zarr plugin is not registered Usage & Issues napari ome-zarr 16 118 1h .tiff images from vilber machine cannot be imported on OMERO Usage & Issues fiji bio-formats omero omero-insight 2 18 1h Unable to Install/Run AnalyzeSkeleton in ImageJ Extension within QuPath Usage & Issues imagej fiji qupath skeleton-analysis 8 55 1h Windows installation of CellProfiler for use wih stardist and cellpose Usage & Issues cellprofiler 0 10 2h Fiji batch processing macro issues - slow down with time Usage & Issues imagej fiji macro 5 227 2h GPU-accelerated CellProfiler Development cellprofiler 4 686 2h How to convert .dcm file to any image format Image Analysis imagej fiji plugin batch-processing 2 78 2h Extract single slice (image) from stack Image Analysis imagej 3 8.0k 2h About Microscope Measurement Tools Usage & Issues fiji 6 473 3h Deskewing Lightsheet Data Image Analysis lightsheet 3 26 3h Importing seg.npy files into napari? Usage & Issues napari cellpose cellpose-napari 8 139 6h Is it possible to get coordinates for segmentation mask generated by felzenszwalb functions? Development scikit-image 5 58 6h JVM not running in Spyder 5.4.1 using PyImageJ Development python pyimagej spyder 1 41 7h Fiji runCommand second argument for Sort? Development imagej fiji 1 21 7h About the cell segmentation by using cellpose 2.2 Image Analysis imagej cellprofiler qupath python bio-formats imagej1 1 22 8h How to change color of tracked particles in mosaic Image Analysis fiji mosaic 3 30 8h BioImage Model Zoo would like to join image.sc as community partner Websites community-partner bioimageio 0 34 8h How to draw curves by the obtained x-y coordinates on the initial image Image Analysis imagej fiji 5 79 9h Estimate Quantitative properties of fibers (in battery separators) using Python Image Analysis python 2 28 10h Export problem with cytomap Usage & Issues qupath cytomap 16 407 11h A question in intensity measurement Image Analysis qupath 3 22 11h Automated Draw Lines to closest detected cell of specified class Image Analysis qupath 9 25 11h Bounding box object detection in deepImageJ Image Analysis fiji deepimagej 2 54 11h Pycromanger: issue using MDA Acquisitions (unclosed file warning and metadata) Usage & Issues python micro-manager 1 25 12h Check Orientation in brainreg Usage & Issues napari registration brainglobe brainreg 0 27 12h Convex hull units? SNT Image Analysis snt neuroanatomy convexhull 0 8 12h Command not Recognized in Macro Image Analysis imagej fiji macro segmentation contrast 2 27 13h Invalid date Invalid date