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This website uses cookies to ensure you get the best experience on our website. Learn more Got it! IMAGE.SC FORUM Topic Replies Views Activity Related Communities Websites There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory … 2 16368 February 10, 2020 Welcome to the Image.sc Forum! Announcements Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag… 4 10895 April 29, 2020 Count nearest neighbouring pores using python Image Analysis python , scikit-image , napari 1 24 August 11, 2022 Invalid Tile Size Usage & Issues omero-server , omero-scripts 0 8 August 11, 2022 Saving template in QuickFigures Usage & Issues fiji , imagej , quickfigures 4 33 August 11, 2022 Help for ABBA in Fiji: Error with Elastix Registration Usage & Issues fiji , abba 0 8 August 10, 2022 Cellpose on MacOS M1 Pro (Apple Silicon arm64) Development python , macos , cellpose 11 507 August 10, 2022 What errors can be found with Check Correspondence process in MGX? Image Analysis morphographx 4 35 August 10, 2022 Help saving channel metadata in micromanager beanshell script Image Analysis micro-manager 4 33 August 10, 2022 3D Segmentation Image Analysis fiji , plugin , segmentation , morpholibj 27 311 August 10, 2022 Multichannel tiff with custom channel names with Python Tifffile Usage & Issues python 3 19 August 10, 2022 Sholl analysis wrong intersection count Image Analysis neuroanatomy , sholl-analysis , snt 10 76 August 10, 2022 C++ Zarr library Development ome-ngff , zarr 22 236 August 10, 2022 Beta-galactosidase stain image problem Image Analysis cellprofiler 0 10 August 10, 2022 Best approach for measuring spheroid number and volume using nuclei Image Analysis fiji 1 26 August 10, 2022 Issue copy pasting a .vsi image from ImageJ/FIJI Usage & Issues fiji , imagej , copy , paste 1 13 August 10, 2022 Colony counting in 96 grid format - how to include objects that touch the grid? Image Analysis cellprofiler 0 9 August 10, 2022 3d Objects counter does not generate a 3D map Usage & Issues fiji , 3d-objects-counter 2 18 August 10, 2022 StarDist3D wrapper for Fiji (new version) Announcements fiji , stardist 5 240 August 10, 2022 Batch processing to Merge channels for microscopy images Image Analysis imagej , batch-processing , merge-channels , imagej-macro 4 511 August 9, 2022 Extracting ROI counts from Cellpose batch processing Data Management cellpose 0 10 August 10, 2022 .VSI Format update: Unable to open new files Usage & Issues bio-formats , qupath , industry 6 82 August 10, 2022 Spacing between images in OMERO.figure Usage & Issues omero-figure 4 82 August 10, 2022 Macro will not save the composite image Image Analysis fiji , bio-formats , macro , thresholding , scripting 4 44 August 10, 2022 CellProfiler giving nan for position for high label number Usage & Issues cellprofiler 11 81 August 10, 2022 Slow writing to persistent Zarr array Development python , tiff , zarr 6 448 August 10, 2022 Ilastik: export with original file names Usage & Issues ilastik 7 70 August 10, 2022 Apply channel names to all images in an OMERO dataset - possible bug? Usage & Issues omero 6 46 August 10, 2022 Segmenting a large dataset Usage & Issues ilastik 8 281 August 10, 2022 Cellpose in QuPath - QuPath Extension Cellpose Announcements qupath , qupath-extension 149 3746 August 10, 2022 next page → * Home * Categories * FAQ/Guidelines * Terms of Service * Privacy Policy Powered by Discourse, best viewed with JavaScript enabled Skip to main content * zulipchatlight * relatedforums Sign UpLog In * * Community Partners All Topics AGAVE AICSImageIO Aydin BIAFLOWS BIII BiofilmQ Bio-Formats BoneJ BrainGlobe Cellpose CellProfiler CLIJ CytoMAP Cytomine DeepLabCut Fiji FLIMLib GerBI Icy IDR ilastik ImageJ ImageJ2 ImgLib2 ImJoy JIPipe Mars MCMICRO MIA MIB μManager MoBIE MorphoGraphX MorphoNet napari NEUBIAS OME OMERO OpenIRIS OpenSPIM Orbit Piximi PYME Python-Microscope QuPath SCIFIO scikit-image sciview Segmenter SR-Tesseler StarDist starfish TissUUmaps vedo webKnossos ZeroCostDL4Mic Your Icon Here Dormant Partners -------------------------------------------------------------------------------- SPONSORED BY COBA RELATED COMMUNITIES 1. all categories 2. all tags 3. all * Latest * Top * Categories * Topic Replies Views Activity Related Communities Websites There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory … read more 2 16.4k Feb '20 Welcome to the Image.sc Forum! Announcements Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag… read more 4 10.9k Aug '19 Count nearest neighbouring pores using python Image Analysis python napari scikit-image 1 24 2h Invalid Tile Size Usage & Issues omero-server omero-scripts 0 8 3h Saving template in QuickFigures Usage & Issues imagej fiji quickfigures 4 33 5h Help for ABBA in Fiji: Error with Elastix Registration Usage & Issues fiji abba 0 8 5h Cellpose on MacOS M1 Pro (Apple Silicon arm64) Development python cellpose macos 11 507 6h What errors can be found with Check Correspondence process in MGX? Image Analysis morphographx 4 35 6h Help saving channel metadata in micromanager beanshell script Image Analysis micro-manager 4 33 7h 3D Segmentation Image Analysis fiji plugin segmentation morpholibj 27 311 7h Multichannel tiff with custom channel names with Python Tifffile Usage & Issues python 3 19 7h Sholl analysis wrong intersection count Image Analysis snt neuroanatomy sholl-analysis 10 76 8h C++ Zarr library Development ome-ngff zarr 22 236 8h Beta-galactosidase stain image problem Image Analysis cellprofiler 0 10 8h Best approach for measuring spheroid number and volume using nuclei Image Analysis fiji 1 26 9h Issue copy pasting a .vsi image from ImageJ/FIJI Usage & Issues imagej fiji copy paste 1 13 10h Colony counting in 96 grid format - how to include objects that touch the grid? Image Analysis cellprofiler 0 9 10h 3d Objects counter does not generate a 3D map Usage & Issues fiji 3d-objects-counter 2 18 11h StarDist3D wrapper for Fiji (new version) Announcements fiji stardist 5 240 12h Batch processing to Merge channels for microscopy images Image Analysis imagej batch-processing imagej-macro merge-channels 4 511 13h Extracting ROI counts from Cellpose batch processing Data Management cellpose 0 10 13h .VSI Format update: Unable to open new files Usage & Issues qupath bio-formats industry 6 82 13h Spacing between images in OMERO.figure Usage & Issues omero-figure 4 82 14h Macro will not save the composite image Image Analysis fiji macro bio-formats scripting thresholding 4 44 14h CellProfiler giving nan for position for high label number Usage & Issues cellprofiler 11 81 14h Slow writing to persistent Zarr array Development python tiff zarr 6 448 14h Ilastik: export with original file names Usage & Issues ilastik 7 70 14h Apply channel names to all images in an OMERO dataset - possible bug? Usage & Issues omero 6 46 15h Segmenting a large dataset Usage & Issues ilastik 8 281 15h Cellpose in QuPath - QuPath Extension Cellpose Announcements qupath qupath-extension 149 3.7k 15h Invalid date Invalid date