pebblescout.ncbi.nlm.nih.gov
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2607:f220:41e:4290::113
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URL:
https://pebblescout.ncbi.nlm.nih.gov/
Submission Tags: falconsandbox
Submission: On October 30 via api from US — Scanned from DE
Submission Tags: falconsandbox
Submission: On October 30 via api from US — Scanned from DE
Form analysis 25 forms found in the DOM
POST
<form id="id-form" enctype="multipart/form-data" method="post" target="_blank" data-fasta-letters="ATGCNUatgcnu" data-fasta-errors-rate="0.1" data-fasta-maxsizemb="15" data-fasta-minsize="42">
<div id="id-form-custom" style="display:none"></div>
<input type="hidden" id="id-acc" name="accession"><input type="hidden" id="id-report" value="summary"><input id="c-_h" type="hidden" name="_h" value="1001" default="1001" screen_only="1">
<div class="step" title="Type FASTA Lines or GenBank Accession" style="border:none; padding-bottom:0.15rem">
<i class="edit icon"></i>
<div class="content">
<div class="title" style="padding-bottom:.5rem">Type FASTA Lines or GenBank Accessions Separated by Commas</div>
<div class="ui action input" style="">
<textarea id="id-fasta" type="text" name="fasta" placeholder="Type FASTA lines here (sequence length must be at least 42 bases) or comma separated list or GenBank accessions"
onchange="oNotifier.Notify(this, 'check', {target_id:'id-fasta', message_id:'id-fasta-message', check_fasta:true})" data-section="pebblescout" data-ga-action="textarea_fasta_text"></textarea><button class="ui icon button" type="button"
title="Erase" aria-label="Erase" onclick="oNotifier.Notify(this, 'erase', {target_id:'id-fasta', message_id:'id-fasta-message'})" data-section="pebblescout" data-ga-action="btn_erase_fasta_text"><i class="x icon"></i></button>
<div id="id-fasta-message" class="ui left pointing red basic label" style="display:none;height:3rem;"></div>
</div>
</div>
</div>
<div class="step" title="Upload file with FASTA lines" style="padding-top:0.15rem; border:none">
<i class="upload icon"></i>
<div class="content">
<div class="title" style="padding-bottom:.5rem">or Upload FASTA File</div>
<input id="id-file" type="file" name="fasta_file" placeholder="Upload file with FASTA" onchange="oNotifier.Notify(this, 'check', {target_id:'id-file', message_id:'id-file-message', check_fasta:true})" data-section="pebblescout"
data-ga-action="input_fasta_file" style="background-color:#eee; margin-right:.25rem; padding:.5rem 0"><button class="ui icon button" type="button" title="Erase" aria-label="Erase"
onclick="oNotifier.Notify(this, 'erase', {target_id:'id-file', message_id:'id-file-message'})" data-section="pebblescout" data-ga-action="btn_erase_fasta_file"><i class="x icon"></i></button>
<div id="id-file-message" class="ui left pointing red basic label" style="display:none"></div>
</div>
</div>
<div id="id-from-to-section" class="step" title="Set Subsequence" style="display:none;padding-top:0.15rem; border:none">
<i class="cut icon"></i>
<div class="content">
<div class="title" style="padding-bottom:.5rem">Set Subsequence</div>
<div class="ui action labeled input" style="margin-bottom:.25rem;">
<label for="id-from" class="ui label" style="width:5rem;">From</label>
<div id="id-from-message" class="ui xright xpointing red basic label" style="display:none"></div>
<input id="id-from" type="number" name="from" placeholder="begin" size="5" min="1" pattern="\d*" onchange="oNotifier.Notify(this, 'check', {target_id:'id-from', message_id:'id-from-message', value:this.value, min:1, max:15728640})"
data-section="pebblescout" data-ga-action="input_from" style="margin-right:.25rem;width:8rem"><button class="ui icon button" type="button" title="Erase" aria-label="Erase"
onclick="oNotifier.Notify(this, 'erase', {target_id:'id-from', message_id:'id-from-message'})" data-section="pebblescout" data-ga-action="btn_erase_from"><i class="x icon"></i></button>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;">
<label for="id-to" class="ui label" style="width:5rem;">To</label>
<div id="id-to-message" class="ui xleft xpointing red basic label" style="display:none"></div>
<input id="id-to" type="number" name="to" placeholder="end" size="5" min="2" pattern="\d*" onchange="oNotifier.Notify(this, 'check', {target_id:'id-to', message_id:'id-to-message', value:this.value, min:2, max:15728640})"
data-section="pebblescout" data-ga-action="input_to" style="margin-right:.25rem;width:8rem"><button class="ui icon button" type="button" title="Erase" aria-label="Erase"
onclick="oNotifier.Notify(this, 'erase', {target_id:'id-to', message_id:'id-to-message'})" data-section="pebblescout" data-ga-action="btn_erase_to"><i class="x icon"></i></button>
</div>
</div>
</div>
</form><form id="id-report-meta-profile" class="ph ph-report">
<input type="hidden" id="id-o-meta-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-meta-summary" class="ph ph-report active">
<input type="hidden" id="id-o-meta-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-meta-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-meta-summary-g" name="g" value="5663"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-summary-g",value:this.value,default:5663,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_meta_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-summary-g",value:this.value,default:5663,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_meta_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-meta-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-meta-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-meta-summary-c" name="c" value="13000"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-summary-c",value:this.value,default:13000,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_meta_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-summary-c",value:this.value,default:13000,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_meta_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-meta-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-meta-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-meta-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_meta_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_meta_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-meta-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-meta-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-meta-detailed" class="ph ph-report">
<input type="hidden" id="id-o-meta-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-meta-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-meta-detailed-g" name="g" value="5663"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-detailed-g",value:this.value,default:5663,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_meta_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-detailed-g",value:this.value,default:5663,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-meta-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_meta_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-meta-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-meta-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-meta-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-meta-detailed-c" name="c" value="13000"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-detailed-c",value:this.value,default:13000,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_meta_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-detailed-c",value:this.value,default:13000,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-meta-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_meta_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-meta-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-meta-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-meta-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-meta-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-meta-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_meta_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-meta-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_meta_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-wgs-profile" class="ph ph-report">
<input type="hidden" id="id-o-wgs-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-wgs-summary" class="ph ph-report active">
<input type="hidden" id="id-o-wgs-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-wgs-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-wgs-summary-g" name="g" value="6232"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-summary-g",value:this.value,default:6232,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_wgs_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-summary-g",value:this.value,default:6232,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_wgs_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-wgs-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-wgs-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-wgs-summary-c" name="c" value="4500"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-summary-c",value:this.value,default:4500,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_wgs_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-summary-c",value:this.value,default:4500,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_wgs_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-wgs-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-wgs-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-wgs-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_wgs_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_wgs_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-wgs-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-wgs-detailed" class="ph ph-report">
<input type="hidden" id="id-o-wgs-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-wgs-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-wgs-detailed-g" name="g" value="6232"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-detailed-g",value:this.value,default:6232,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_wgs_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-detailed-g",value:this.value,default:6232,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_wgs_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-wgs-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-wgs-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-wgs-detailed-c" name="c" value="4500"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-detailed-c",value:this.value,default:4500,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_wgs_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-detailed-c",value:this.value,default:4500,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_wgs_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-wgs-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-wgs-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-wgs-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-wgs-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-wgs-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_wgs_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-wgs-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_wgs_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-refseq-profile" class="ph ph-report">
<input type="hidden" id="id-o-refseq-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-refseq-summary" class="ph ph-report active">
<input type="hidden" id="id-o-refseq-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-refseq-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-refseq-summary-g" name="g" value="11924"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-summary-g",value:this.value,default:11924,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_refseq_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-summary-g",value:this.value,default:11924,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_refseq_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-refseq-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-refseq-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-refseq-summary-c" name="c" value="1030"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-summary-c",value:this.value,default:1030,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_refseq_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-summary-c",value:this.value,default:1030,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_refseq_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-refseq-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-refseq-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-refseq-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_refseq_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_refseq_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-refseq-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-refseq-detailed" class="ph ph-report">
<input type="hidden" id="id-o-refseq-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-refseq-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-refseq-detailed-g" name="g" value="11924"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-detailed-g",value:this.value,default:11924,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_refseq_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-detailed-g",value:this.value,default:11924,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_refseq_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-refseq-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-refseq-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-refseq-detailed-c" name="c" value="1030"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-detailed-c",value:this.value,default:1030,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_refseq_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-detailed-c",value:this.value,default:1030,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_refseq_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-refseq-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-refseq-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-refseq-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-refseq-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-refseq-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_refseq_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-refseq-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_refseq_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-run-profile" class="ph ph-report">
<input type="hidden" id="id-o-run-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-run-summary" class="ph ph-report active">
<input type="hidden" id="id-o-run-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-run-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-run-summary-g" name="g" value="36842"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-summary-g",value:this.value,default:36842,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_run_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-summary-g",value:this.value,default:36842,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_run_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-run-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-run-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-run-summary-c" name="c" value="150"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-summary-c",value:this.value,default:150,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_run_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-summary-c",value:this.value,default:150,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_run_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-run-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-run-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-run-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_run_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_run_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-run-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-run-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-run-detailed" class="ph ph-report">
<input type="hidden" id="id-o-run-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-run-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-run-detailed-g" name="g" value="36842"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-detailed-g",value:this.value,default:36842,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_run_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-detailed-g",value:this.value,default:36842,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-run-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_run_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-run-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-run-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-run-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-run-detailed-c" name="c" value="150"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-detailed-c",value:this.value,default:150,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_run_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-detailed-c",value:this.value,default:150,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-run-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_run_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-run-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-run-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-run-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-run-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-run-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_run_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-run-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_run_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-biosample-profile" class="ph ph-report">
<input type="hidden" id="id-o-biosample-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-biosample-summary" class="ph ph-report active">
<input type="hidden" id="id-o-biosample-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-biosample-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-biosample-summary-g" name="g" value="2504"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-summary-g",value:this.value,default:2504,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_biosample_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-summary-g",value:this.value,default:2504,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_biosample_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-biosample-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-biosample-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-biosample-summary-c" name="c" value="10"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-summary-c",value:this.value,default:10,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_biosample_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-summary-c",value:this.value,default:10,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_biosample_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-biosample-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-biosample-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-biosample-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_biosample_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_biosample_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-biosample-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-biosample-detailed" class="ph ph-report">
<input type="hidden" id="id-o-biosample-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-biosample-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-biosample-detailed-g" name="g" value="2504"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-detailed-g",value:this.value,default:2504,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_biosample_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-detailed-g",value:this.value,default:2504,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_biosample_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-biosample-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-biosample-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-biosample-detailed-c" name="c" value="10"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-detailed-c",value:this.value,default:10,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_biosample_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-detailed-c",value:this.value,default:10,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_biosample_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-biosample-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-biosample-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-biosample-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-biosample-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-biosample-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_biosample_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-biosample-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_biosample_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-hrna_2021-profile" class="ph ph-report">
<input type="hidden" id="id-o-hrna_2021-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-hrna_2021-summary" class="ph ph-report active">
<input type="hidden" id="id-o-hrna_2021-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-hrna_2021-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-hrna_2021-summary-g" name="g" value="20581"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-summary-g",value:this.value,default:20581,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-summary-g",value:this.value,default:20581,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_hrna_2021_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-hrna_2021-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-hrna_2021-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-hrna_2021-summary-c" name="c" value="1150"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-summary-c",value:this.value,default:1150,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-summary-c",value:this.value,default:1150,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_hrna_2021_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-hrna_2021-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-hrna_2021-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-hrna_2021-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_hrna_2021_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-hrna_2021-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-hrna_2021-detailed" class="ph ph-report">
<input type="hidden" id="id-o-hrna_2021-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-hrna_2021-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-hrna_2021-detailed-g" name="g" value="20581"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-detailed-g",value:this.value,default:20581,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-detailed-g",value:this.value,default:20581,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_hrna_2021_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-hrna_2021-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-hrna_2021-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-hrna_2021-detailed-c" name="c" value="1150"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-detailed-c",value:this.value,default:1150,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-detailed-c",value:this.value,default:1150,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_hrna_2021_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-hrna_2021-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-hrna_2021-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-hrna_2021-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-hrna_2021-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-hrna_2021-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_hrna_2021_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-hrna_2021-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_hrna_2021_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-vpbsmrt-profile" class="ph ph-report">
<input type="hidden" id="id-o-vpbsmrt-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-vpbsmrt-summary" class="ph ph-report active">
<input type="hidden" id="id-o-vpbsmrt-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-vpbsmrt-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-vpbsmrt-summary-g" name="g" value="6917"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-summary-g",value:this.value,default:6917,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-summary-g",value:this.value,default:6917,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_vpbsmrt_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-vpbsmrt-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-vpbsmrt-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-vpbsmrt-summary-c" name="c" value="610"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-summary-c",value:this.value,default:610,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-summary-c",value:this.value,default:610,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_vpbsmrt_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-vpbsmrt-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-vpbsmrt-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-vpbsmrt-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_vpbsmrt_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-vpbsmrt-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-vpbsmrt-detailed" class="ph ph-report">
<input type="hidden" id="id-o-vpbsmrt-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-vpbsmrt-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-vpbsmrt-detailed-g" name="g" value="6917"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-detailed-g",value:this.value,default:6917,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-detailed-g",value:this.value,default:6917,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_vpbsmrt_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-vpbsmrt-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-vpbsmrt-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-vpbsmrt-detailed-c" name="c" value="610"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-detailed-c",value:this.value,default:610,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-detailed-c",value:this.value,default:610,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_vpbsmrt_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-vpbsmrt-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-vpbsmrt-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-vpbsmrt-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-vpbsmrt-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-vpbsmrt-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_vpbsmrt_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-vpbsmrt-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_vpbsmrt_detailed__a"><i class="x icon"></i></button>
</div>
</form><form id="id-report-sra_microbe-profile" class="ph ph-report">
<input type="hidden" id="id-o-sra_microbe-profile-m" name="m" value="3" default="3">
<div class="ui message">No advanced options</div>
</form><form id="id-report-sra_microbe-summary" class="ph ph-report active">
<input type="hidden" id="id-o-sra_microbe-summary-m" name="m" value="2" default="2">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-sra_microbe-summary-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-sra_microbe-summary-g" name="g" value="7539"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-summary-g",value:this.value,default:7539,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_summary_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-summary-g",value:this.value,default:7539,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_summary_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-g')" data-section="pebblescout" data-ga-action="input_option_help_sra_microbe_summary_g"><i class="icon question"></i></button>
</div>
<div id="id-help-sra_microbe-summary-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-sra_microbe-summary-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-sra_microbe-summary-c" name="c" value="1760"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-summary-c",value:this.value,default:1760,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_summary_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-summary-c",value:this.value,default:1760,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_summary_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-c')" data-section="pebblescout" data-ga-action="input_option_help_sra_microbe_summary_c"><i class="icon question"></i></button>
</div>
<div id="id-help-sra_microbe-summary-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Max #subjects per query option">
<label for="id-o-sra_microbe-summary-_r" class="ui label" style="width:15rem;">Max #subjects per query</label><input id="id-o-sra_microbe-summary-_r" name="_r" value="100"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_summary__r" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-summary-_r",value:this.value,default:100,min:1,max:100000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_summary__r"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-_r')" data-section="pebblescout" data-ga-action="input_option_help_sra_microbe_summary__r"><i class="icon question"></i></button>
</div>
<div id="id-help-sra_microbe-summary-_r" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-summary-_r')"></i>
<div class="header">Explanation of Max #subjects per query</div>
<p> Maximum number of subjects to report results for per query. View is limited to 100 subjects per query. In Download, one can use -1 to specify all results found. </p>
</div>
<br>
</form><form id="id-report-sra_microbe-detailed" class="ph ph-report">
<input type="hidden" id="id-o-sra_microbe-detailed-m" name="m" value="1" default="1">
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Masking threshold option">
<label for="id-o-sra_microbe-detailed-g" class="ui label" style="width:15rem;">Masking threshold</label><input id="id-o-sra_microbe-detailed-g" name="g" value="7539"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-detailed-g",value:this.value,default:7539,min:1,max:3500000})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_detailed_g" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-detailed-g",value:this.value,default:7539,min:1,max:3500000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_detailed_g"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-detailed-g')" data-section="pebblescout" data-ga-action="input_option_help_sra_microbe_detailed_g"><i class="icon question"></i></button>
</div>
<div id="id-help-sra_microbe-detailed-g" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-detailed-g')"></i>
<div class="header">Explanation of Masking threshold</div>
<p> 25-mers saved in the index from more than the specified masking constant are not considered for computation. See <a href="?view=doc#s-3">How is masking determined?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit Score constant option">
<label for="id-o-sra_microbe-detailed-c" class="ui label" style="width:15rem;">Score constant</label><input id="id-o-sra_microbe-detailed-c" name="c" value="1760"
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-detailed-c",value:this.value,default:1760,min:1,max:1000000})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_detailed_c" type="number"
style="width:8rem"><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-detailed-c",value:this.value,default:1760,min:1,max:1000000})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_detailed_c"><i class="x icon"></i></button><button class="teal circular ui icon button" type="button" aria-label="Description" style="border-radius:10em; margin-left:.5rem"
onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-detailed-c')" data-section="pebblescout" data-ga-action="input_option_help_sra_microbe_detailed_c"><i class="icon question"></i></button>
</div>
<div id="id-help-sra_microbe-detailed-c" class="ui info message help" style="display:none">
<i class="close icon" onclick="oNotifier.Notify(this, 'help', 'id-help-sra_microbe-detailed-c')"></i>
<div class="header">Explanation of Score constant</div>
<p> Score constant determines the scaling for computing raw score. Lower constant promotes rarely saved 25-mers more than a higher constant. See <a href="?view=doc#s-4">What do the different scores mean?</a> in documentation. </p>
</div>
<br>
<div class="ui action labeled input" style="margin-bottom:.25rem;" title="Edit List of accessions option">
<label for="id-o-sra_microbe-detailed-_a" class="ui label" style="width:15rem;">List of accessions</label><input id="id-o-sra_microbe-detailed-_a" name="_a" value=""
onchange="oNotifier.Notify(this, 'check', {target_id:"id-o-sra_microbe-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout" data-ga-action="input_option_sra_microbe_detailed__a" style="width:20rem"
placeholder="Mandatory field. Should be not empty."><button class="ui icon button" type="button" title="Restore default value" aria-label="Restore default value"
onclick="oNotifier.Notify(this, 'erase', {target_id:"id-o-sra_microbe-detailed-_a",value:this.value,filter:"acc_list"})" data-section="pebblescout"
data-ga-action="input_option_restore_default_sra_microbe_detailed__a"><i class="x icon"></i></button>
</div>
</form>Text Content
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that any information you provide is encrypted and transmitted securely.
PebbleScout beta
Search
Documentation
Pebblescout is a pilot web service that allows you to do a fast and efficient
search for subjects in very large nucleotide databases, such as runs in the NIH
Sequence Read Archive (SRA) and assemblies for whole genome shotgun sequencing
projects in Genbank. Please reach out to us via email at
pebblescout@ncbi.nlm.nih.gov if you have questions or would like to provide
feedback.
Please cite "Shiryev, S.A., Agarwala, R. Indexing and searching petabase-scale
nucleotide resources. Nature Methods (2024).
https://doi.org/10.1038/s41592-024-02280-z" in any publication that uses
Pebblescout.
Eight databases currently available are as follows:
1. Metagenomic: All metagenomic and metatranscriptomic runs released in public
SRA before the end of 2021
2. WGS: All assemblies for the Whole Genome Shotgun sequencing projects
available as of Feb 14, 2022
3. RefSeq: All assemblies available in the Reference Sequence collection as of
April 22, 2022
4. PH2HS_Runs: Runs from Phase 3 of the 1000 Genomes project
5. PH3HS_Biosample: Runs from Phase 3 of the 1000 Genomes project where all
runs for the same BioSample are considered as one subject
6. Human RNAseq 2021: All Human RNAseq runs released in public SRA in the year
2021
7. Virus PacBio HiFi: Viral samples sequenced with the PacBio SMRT technology
defined in PMC9528980
8. SRA microbe: Bacterial and Viral samples defined in PMC6420049 available on
Jan 13, 2024
Documentation page provides additional information.
Please provide nucleotide queries, choose database and type of search to be
performed, change parameters, as needed, and click View or Download. Please
re-click View or Download if you change inputs.
Type FASTA Lines or GenBank Accessions Separated by Commas
or Upload FASTA File
Set Subsequence
From
To
Select Database and Report
Metagenomic WGS RefSeq PH3HS_Runs PH3HS_Biosample Human RNAseq 2021 Virus PacBio
HiFi SRA Microbe
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
ProfileSummaryDetailed
No advanced options
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
Max #subjects per query
Explanation of Max #subjects per query
Maximum number of subjects to report results for per query. View is limited to
100 subjects per query. In Download, one can use -1 to specify all results
found.
Masking threshold
Explanation of Masking threshold
25-mers saved in the index from more than the specified masking constant are not
considered for computation. See How is masking determined? in documentation.
Score constant
Explanation of Score constant
Score constant determines the scaling for computing raw score. Lower constant
promotes rarely saved 25-mers more than a higher constant. See What do the
different scores mean? in documentation.
List of accessions
View
Download
View shows a maximum of 1000 rows, Download is limited to one million rows
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Updated: Thu May 16 10:38:00 EDT 2024
Loading
Debug output
* Show Model Hide Model
PARAMS
{}
CTX
{ "version": 1, "apps": { "pebblescout": { "bCanSearch": "", "db": "meta",
"report": "summary", "db_title": "Metagenomic", "report_title": "Summary" }
}, "view": "pebblescout" }
CFG
{ "header": { "title": "PebbleScout", "subtitle": "beta", "window_title":
"PebbleScout (beta) : NCBI" }, "header_menu": { "search": { "title": "Search"
}, "doc": { "title": "Documentation" } }, "pebblescout": { "items": {
"search": { "xml": "pebblescout", "xsl": "form" }, "report": { "be":
"../sra-cl-be/sra-cl-be.cgi?rettype=pebblescout", "max_lines": 1000, "xsl":
"report" } } }, "static": { "default": { "xsl": "static", "item": "doc" },
"items": { "doc": { "xml": "xml/doc" } } } }
* Report type processed xml raw
* Reset Context