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Type (set all):
Auto-detect

Auto-detectab1agilentbrukeryep.d.taragilentmasshunter.d.taragpampvis2arbarb.gzarffasn1asn1-binaryaugustusaviaxtbambcfbcf_uncompressedbcsl.modelbcsl.tsbedbed12bed6bed_tabix.gzbedgraphbedstrictbgzipbigbedbigwigbilbiom1biom2blastxmlblibbref3brukerbaf.d.tarbrukertdf.d.tarbuscastepcelcellchira.sqlitechrintcifcismlckptcmapcmlconsensusxmlcoolcpscptcramcsfastacsvctctl.resultcuffdiff.sqlitecxbd3_hierarchydaadada2_dadadada2_errorratesdada2_mergepairsdada2_sequencetabledada2_uniquesdbndbnsfp.tabulardcddeeptools_compute_matrix_archivedeeptools_coverage_matrixden_fmtdlibdrfdtadta2ddziedredtaelandelandmultielibemblencodepeakexcel.xlsexpression.jsonextxyzfaifast5fast5.tarfast5.tar.bz2fast5.tar.gzfastafasta.gzfastgfastqfastq.bz2fastq.gzfastqcssangerfastqcssanger.bz2fastqcssanger.gzfastqilluminafastqillumina.bz2fastqillumina.gzfastqsangerfastqsanger.bz2fastqsanger.gzfastqsolexafastqsolexa.bz2fastqsolexa.gzfcsfeaturexmlffdataffindexfitsflowclrflowframeflowmfiflowscoreflowsetflowstat1flowstat2flowstat3flowtextflvfpsfqtocfsomgafa.sqlitegalgatk_dbsnpgatk_intervalgatk_recalgatk_reportgatk_tranchegemini.sqlitegenbankgenbank.gzgenenotebookgeojsongfa1gfa1.gzgfa2gfa2.gzgffgff3gff3.bz2gff3.gzgff_tabix.gzgiigii.gzgmsh.geogmsh.mshgprgrdgrd.tgzgribgrogtfh5h5adh5mlmhdf4hdrhdthep.roothexrd.accepted_orientationshexrd.eta_ome.npzhexrd.images.npzhexrd.materials.h5hexrd.scored_orientations.npzhexrd.ymlhhrhic_matrixhlfhmm2hmm3ibdicmidatidatidpdbidxmlimgt.jsoninchiinpcrdintermine_tabularintervalipynbitpjellyfishjp2jpgjsonjsonldjuicebox_hicjuicer_medium_tabix.gzkallisto.idxkroeniklavlenloommafmascotxmlmaskinfo-asn1maskinfo-asn1-binarymatmcoolmdpmemepspmemexmlmeryldbmetacyto_clr.txtmetacyto_stats.txtmetacyto_summary.txtmgfmkvmolmol2mongodbmothur.accnosmothur.alignmothur.align.checkmothur.align.reportmothur.axesmothur.cons.taxonomymothur.count_tablemothur.designmothur.distmothur.filtermothur.filtered.masked.quanmothur.filtered.quanmothur.freqmothur.groupsmothur.listmothur.lower.distmothur.mapmothur.masked.quanmothur.namesmothur.oligosmothur.otumothur.otu.corrmothur.otulabelsmothur.pair.distmothur.quanmothur.rabundmothur.rdp.taxonomymothur.ref.taxonomymothur.relabundmothur.sabundmothur.seq.taxonomymothur.sff.flowmothur.sharedmothur.square.distmothur.summarymothur.tax.summarymothur.tremovmp3mp4mpgmrcmrmms2mshmspmtxmz.sqlitemz5mzdatamzidmzmlmzqmzqcmztabmztab2mzxmln3ncbi_genome_dataset.zipncbitaxonomy.sqlitendxneper.mscellneper.pointsneper.points.tsvneper.tesrneper.tessnetcdfnewicknexnhxnii1nii1.gznii2nii2.gznmrmlno_unzip.zipnpzntoboodgiome.tiffonnxoswowloxlicgoxligloxlingoxlissoxlistoxlitspafpaf.gzparparamparamxmlparquetpdbpdbqtpdfpeffpeplistpeptideshaker_archivepepxmlpepxml.tsvpharphylipphyloseqphyloxmlpicard_interval_listpileuppithya.modelpithya.propertypithya.resultplyasciiplybinarypngpostgresqlpovpqppqrpretextprmtopprobamprobedprotobuf2protobuf3protxmlprotxml.tsvpslpsmspssm-asn1ptkscmpqcmlqcmlqiime2.tabularqname_sorted.bamqual454qualilluminaqualsolexaqualsolidqzaqzvrdatardata.camera.negativerdata.camera.positiverdata.camera.quickrdata.msnbase.rawrdata.scerdata.xcms.fillpeaksrdata.xcms.findchrompeaksrdata.xcms.grouprdata.xcms.rawrdata.xcms.retcorrdfrdock_asrdsrma6rna_epssamsbmlscfscidxscoolscoolsdfsearchgui_archivesf3sffsifsmatsmisnaphmmsnpeffdbsnpmatrixsnptestsource.csource.cppsource.cssource.gosource.hsource.pysource.rsspec.xmlsplib_noindexsqlitesqmasssrasra_manifest.tabularstarstlstockholmstorm.checkstorm.samplesvgtabulartabular.gztandemtartaxonomytcktextgridtgzthermo.rawtifftomltoptprtrackhubtrafoxmltrafoxmltramltrktrrtsvttltwobittxtuniprotxmlunsorted.bamvcfvcf_bgzipvelvgvisium.tar.gzvtkasciivtkbinarywatersmasslynx.raw.tarwavwiff.tarwiff2.tarwigxgxgmmlxlsxxmfaxmlxquest.xmlxsdxtcxvgxyzyamlzipzset.geof
Genome (set all):
unspecified (?)

unspecified (?) A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) A. gambiae
Oct. 2006 (AgamP3/anoGam3) (anoGam3) A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4)
(apiMel4) A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) A. mellifera
July 2004 (Baylor 1.2/apiMel1) (apiMel1) ARS1 Aug. 2016 Capra hircus (goat) (San
Clemente 2016 USDA) (GCF_001704415.2) Aardvark May 2012 (OryAfe1.0/oryAfe1)
(oryAfe1) Acaryochloris marina MBIC11017 (12997) Acholeplasma laidlawii PG-8A
(19259) Acidiphilium cryptum JF-5 (acidCryp_JF_5) Acidobacteria bacterium
Ellin345 (acidBact_ELLIN345) Acidothermus cellulolyticus 11B (acidCell_11B)
Acidovorax avenae subsp. citrulli AAC00-1 (15708) Acidovorax sp. JS42 (acidJS42)
Acinetobacter baumannii (13001) Acinetobacter baumannii (28921) Acinetobacter
baumannii ATCC 17978 (17477) Acinetobacter baumannii Oct. 2012
(aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) Acinetobacter sp. ADP1 (acinSp_ADP1)
Actinidia chinensis FEI Lab v1.0 Actinobacillus pleuropneumoniae L20
(actiPleu_L20) Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135)
Actinobacillus succinogenes 130Z (13370) Adelie penguin Jun 2014
(ASM69910v1/pygAde1) (pygAde1) Aeromonas hydrophila subsp. hydrophila ATCC 7966
(aeroHydr_ATCC7966) Aeromonas salmonicida subsp. salmonicida A449 (16723)
Aeropyrum pernix K1 (aerPer1) African Clawed Frog (xenLae9.2) African clawed
frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) Afrotheria Apr. 24. 2006
(UCSC Recon/afrOth13) (afrOth13) Agrobacterium tumefaciens str. C58 (283)
Alcanivorax borkumensis SK2 (alcaBork_SK2) Alkalilimnicola ehrlichei MLHE-1
(alkaEhrl_MLHE_1) Alkaliphilus metalliredigens QYMF (13006) Alkaliphilus
oremlandii OhILAs (16083) Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) Alpaca Mar.
2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) Amazon molly 28 Oct-2013
(Poecilia_formosa-5.1.2/poeFor1) (poeFor1) Amborella trichopoda Amborella V1.0
Amborella trichopoda JGI v1.0 American alligator Aug. 2012 (allMis0.2/allMis1)
(allMis1) American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0)
(allMis0) American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) American
flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) Amur tiger 06 Sep 2013
(PanTig1.0/panTig1) (panTig1) Anabaena variabilis ATCC 29413
(anabVari_ATCC29413) Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C)
Anaeromyxobacter sp. Fw109-5 (17729) Ananas comosus JGI v3.0 Anaplasma marginale
str. St. Maries (anapMarg_ST_MARIES) Anaplasma phagocytophilum HZ (336) Anna's
hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) Apostasia shenzhenica v1.0
Aquifex aeolicus VF5 (aquiAeol) Arabidopsis lyrata (Araly1) Arabidopsis lyrata
JGI v1.0 Arabidopsis lyrata JGI v2.1 Arabidopsis thaliana Arabidopsis thaliana
COL-0 Araport11 Arabidopsis thaliana COL-0 TAIR10 Arabidopsis thaliana TAIR10
(Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) Arabidopsis thaliana
TAIR7 (araTha1) Arabidopsis thaliana TAIR8 (arabidopsis_tair8) Arabidopsis
thaliana TAIR9 (arabidopsis) Arachis ipaensis Peanut Base v1.0 Archaeoglobus
fulgidus DSM 4304 (archFulg1) Arcobacter butzleri RM4018 (16319) Arctic lamprey
Sep 2013 (LetJap1.0/letCam1) (letCam1) Armadillo Dec. 2011 (Baylor/dasNov3)
(dasNov3) Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) Armadillo May 2005
(Broad/dasNov1) (dasNov1) Arthrobacter aurescens TC1 (12512) Arthrobacter sp.
FB24 (arthFB24) Asparagus officinalis v1.1 Aster yellows witches'-broom
phytoplasma AYWB (13478) Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1)
(gadMor1) Azoarcus sp. BH72 (13217) Azoarcus sp. EbN1 (azoaSp_EBN1) Azorhizobium
caulinodans ORS 571 (azorCaul2) B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1)
Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) Baboon Mar. 2012 (Baylor
Panu_2.0/papAnu2) (papAnu2) Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1)
Bacillus amyloliquefaciens FZB42 (13403) Bacillus anthracis str. 'Ames Ancestor'
(10784) Bacillus anthracis str. Ames (baciAnth_AMES) Bacillus anthracis str.
Sterne (10878) Bacillus cereus ATCC 10987 (74) Bacillus cereus ATCC 14579 (384)
Bacillus cereus E33L (12468) Bacillus cereus subsp. cytotoxis NVH 391-98 (13624)
Bacillus clausii KSM-K16 (13291) Bacillus halodurans C-125 (baciHalo) Bacillus
licheniformis ATCC 14580 (12388) Bacillus licheniformis ATCC 14580 (13082)
Bacillus pumilus SAFR-032 (20391) Bacillus subtilis subsp. subtilis str. 168
(baciSubt) Bacillus thuringiensis serovar konkukian str. 97-27 (10877) Bacillus
thuringiensis str. Al Hakam (18255) Bacillus weihenstephanensis KBAB4 (13623)
Bacteroides fragilis NCTC 9343 (46) Bacteroides fragilis YCH46 (13067)
Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) Bacteroides vulgatus
ATCC 8482 (13378) Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) Bald eagle Aug
2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) Bar tailed trogon 16 Jun
2014 (ASM70340v1/apaVit1) (apaVit1) Barn owl May 2014 (ASM68720v1/tytAlb1)
(tytAlb1) Bartonella bacilliformis KC583 (16249) Bartonella henselae str.
Houston-1 (bartHens_HOUSTON_1) Bartonella quintana str. Toulouse (44) Bartonella
tribocorum CIP 105476 (28109) Baumannia cicadellinicola str. Hc (Homalodisca
coagulata) (baumCica_HOMALODISCA) Bdellovibrio bacteriovorus HD100 (bdelBact)
Beta vulgaris RefBeet 1.1 Beta vulgaris RefBeet v1.2 Bicolor damselfish May 2014
(Stegastes_partitus-1.0.2/stePar1) (stePar1) Bifidobacterium adolescentis ATCC
15703 (16321) Bifidobacterium longum NCC2705 (bifiLong) Big brown bat Jul 2012
(EptFus1.0/eptFus1) (eptFus1) Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1)
Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) Black rockcod Jul 2014
(NC01/notCor1) (notCor1) Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2)
Bonobo May 2012 (Max-Planck/panPan1) (panPan1) Bonobo May 2020
(Mhudiblu_PPA_v0/panPan3) (panPan3) Bordetella bronchiseptica RB50 (bordBron)
Bordetella parapertussis 12822 (25) Bordetella pertussis Tohama I (26)
Bordetella petrii DSM 12804 (28135) Boreoeutherian Apr. 24. 2006 (UCSC
Recon/borEut13) (borEut13) Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12)
(canHg12) Borrelia afzelii PKo (17057) Borrelia burgdorferi B31 (borrBurg)
Borrelia garinii PBi (12554) Brachypodium distachyon JGI v3.1 Brachypodium
distachyon MIPS 1.2 Bradyrhizobium japonicum USDA 110 (bradJapo) Bradyrhizobium
sp. BTAi1 (16137) Bradyrhizobium sp. ORS278 (19575) Brandt's myotis (bat) 28 Jun
2013 (ASM41265v1/myoBra1) (myoBra1) Braney test Jul. 2013 (braNey1/braNey1)
(braNey1) Brassica oleracea Ensembl Genomes v2.1 Brassica rapa Annotation v1.2
on assembly v1.1 (Phytozome 9.1) Brassica rapa JGI FPsc1.3 Brown kiwi Jun. 2015
(MPI-EVA AptMant0/aptMan1) (aptMan1) Brown roatelo Jun 2014 (ASM69576v1/mesUni1)
(mesUni1) Brucella abortus biovar 1 str. 9-941 (9619) Brucella canis ATCC 23365
(20243) Brucella melitensis 16M (brucMeli) Brucella melitensis biovar Abortus
2308 (16203) Brucella ovis ATCC 25840 (12514) Brucella suis 1330 (320) Brucella
suis ATCC 23445 (20371) Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1)
Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) Buchnera aphidicola
str. Bp (Baizongia pistaciae) (256) Buchnera aphidicola str. Cc (Cinara cedri)
(16372) Buchnera aphidicola str. Sg (Schizaphis graminum) (312) Budgerigar Sep.
2011 (WUSTL v6.3/melUnd1) (melUnd1) Bundibugyo ebolavirus Aug. 2014
(NC_014373.1/bunEbo1) (bunEbo1) Burkholderia ambifaria AMMD (burkCepa_AMMD)
Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) Burkholderia cenocepacia
HI2424 (burkCeno_HI2424) Burkholderia cenocepacia MC0-3 (17929) Burkholderia
mallei ATCC 23344 (burkMall_ATCC23344) Burkholderia mallei NCTC 10229 (13943)
Burkholderia mallei NCTC 10247 (13946) Burkholderia mallei SAVP1 (13947)
Burkholderia multivorans ATCC 17616 (17407) Burkholderia pseudomallei 1106a
(burkPseu_1106A) Burkholderia pseudomallei 1710b (13954) Burkholderia
pseudomallei 668 (13953) Burkholderia pseudomallei K96243 (178) Burkholderia sp.
383 (burk383) Burkholderia thailandensis E264 (burkThai_E264) Burkholderia
vietnamiensis G4 (burkViet_G4) Burkholderia xenovorans LB400 (burkXeno_LB400)
Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1)
Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) Bushbaby Dec. 2006
(Broad/otoGar1) (otoGar1) Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) C.
angaria Oct. 2010 (WS225/caeAng1) (caeAng1) C. brenneri Feb. 2008 (WUGSC
6.0.1/caePb2) (caePb2) C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) C.
brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) C. briggsae Apr. 2011
(WS225/cb4) (cb4) C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) C. briggsae Jan.
2007 (WUGSC 1.0/cb3) (cb3) C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1)
C. elegans Aug. 2007 (WS180/ce5) (ce5) C. elegans Feb 2009 (WS200/ce7) (ce7) C.
elegans Feb. 2013 (WBcel235/ce11) (ce11) C. elegans Jan 2010 (WS210/ce9) (ce9)
C. elegans Jan. 2007 (WS170/ce4) (ce4) C. elegans Jun 2009 (WS204/ce8) (ce8) C.
elegans Mar. 2004 (WS120/ce2) (ce2) C. elegans March 2005 (WS140/ce3) (ce3) C.
elegans May 2008 (WS190/ce6) (ce6) C. elegans Oct. 2010 (WS220/ce10) (ce10) C.
intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) C. intestinalis Dec. 2002 (JGI
1.0/ci1) (ci1) C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) C. japonica Sep.
2010 (WUGSC 7.0.1/caeJap3) (caeJap3) C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4)
(caeJap4) C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) C. japonica Mar.
2008 (WUGSC 3.0.2/caeJap1) (caeJap1) C. remanei Jul. 2007 (WS220/caeRem4)
(caeRem4) C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) C. remanei March
2005 (WUGSC prelim/caeRem1) (caeRem1) C. remanei May 2007 (WUGSC 15.0.1/caeRem3)
(caeRem3) C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) C. savignyi July 2005
(Sidow Lab 2.0/cioSav2) (cioSav2) C. sp. 11 ju1373 Nov. 2010 (WUSTL
3.0.1/caeSp111) (caeSp111) C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71)
(caeSp71) C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) Cactus Nov.
2010 (CactusV3/cacTus3) (cacTus3) Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2)
Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) Cajanus cajan Penguin Genomics
v5.0 Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) Caldivirga
maquilingensis IC-167 (caldMaqu1) Campylobacter concisus 13826 (17159)
Campylobacter curvus 525.92 (17161) Campylobacter fetus subsp. fetus 82-40
(campFetu_82_40) Campylobacter hominis ATCC BAA-381 (20083) Campylobacter jejuni
RM1221 (campJeju_RM1221) Campylobacter jejuni subsp. doylei 269.97 (17163)
Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) Campylobacter jejuni
subsp. jejuni 81116 (17953) Campylobacter jejuni subsp. jejuni NCTC 11168
(campJeju) Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) Candidatus Blochmannia
floridanus (blocFlor) Candidatus Blochmannia pennsylvanicus str. BPEN (13875)
Candidatus Carsonella ruddii PV (candCars_RUDDII) Candidatus Desulforudis
audaxviator MP104C (21047) Candidatus Korarchaeum cryptofilum OPF8 (16525)
Candidatus Methanoregula boonei 6A8 (methBoon1) Candidatus Pelagibacter ubique
HTCC1062 (candPela_UBIQUE_HTCC1) Candidatus Protochlamydia amoebophila UWE25
(paraSp_UWE25) Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
(16841) Candidatus Sulcia muelleri GWSS (19617) Candidatus Vesicomyosocius
okutanii HA (18267) Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1)
Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) Capsella rubella JGI
annotation v1.0 on assembly v1 Capsella rubella JGI v1.0 Capsicum annuum Pepper
Genome v2.0 Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) Carica
papaya Hawaii Agriculture Research Center Carica papaya JGI ASGPB0.4 Cat Dec.
2008 (NHGRI/GTB V17e/felCat4) (felCat4) Cat Mar. 2006 (Broad/felCat3) (felCat3)
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) Cat Nov. 2017
(Felis_catus_9.0/felCat9) (felCat9) Cat Sep. 2011 (ICGSC Felis_catus
6.2/felCat5) (felCat5) Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1)
Caulobacter crescentus CB15 (caulCres) Caulobacter sp. K31 (16306) Cenchrus
americanus v1.0 CentromereY 2013 GrCh38 (centromeres1) Chenopodium quinoa JGI
v1.0 Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) Chicken Feb. 2004
(WUGSC 1.0/galGal2) (galGal2) Chicken Mar. 2018 (GRCg6a/galGal6) (galGal6)
Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) Chicken Nov. 2011 (ICGSC
Gallus_gallus-4.0/galGal4) (galGal4) Chicken Oct. 2021
(bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) Chimp Feb. 2011
(CSAC 2.1.4/panTro4) (panTro4) Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6)
Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) Chimp May 2016 (Pan_tro
3.0/panTro5) (panTro5) Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) Chimp Oct.
2010 (CGSC 2.1.3/panTro3) (panTro3) Chinchilla May 2012 (ChiLan1.0/chiLan1)
(chiLan1) Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) Chinese
hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) Chinese hamster
Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) Chinese hamster Jun. 2017
(CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) Chinese pangolin Aug 2014
(M_pentadactyla-1.1.1/manPen1) (manPen1) Chinese softshell turtle Oct 2011
(PelSin_1.0/pelSin1) (pelSin1) Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1)
(tupChi1) Chlamydia muridarum Nigg (229) Chlamydia trachomatis 434/Bu (28583)
Chlamydia trachomatis A/HAR-13 (13885) Chlamydia trachomatis D/UW-3/CX
(chlaTrac) Chlamydia trachomatis L2b/UCH-1/proctitis (28585) Chlamydomonas
reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6
Chlamydomonas reinhardtii JGI v5.5 Chlamydophila abortus S26/3 (355)
Chlamydophila caviae GPIC (228) Chlamydophila felis Fe/C-56 (370) Chlamydophila
pneumoniae AR39 (247) Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029)
Chlamydophila pneumoniae J138 (257) Chlamydophila pneumoniae TW-183 (420)
Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) Chlorobium phaeobacteroides DSM
266 (12609) Chlorobium tepidum TLS (chloTepi_TLS) Chloroflexus aurantiacus
J-10-fl (59) Chromobacterium violaceum ATCC 12472 (chroViol) Chromohalobacter
salexigens DSM 3043 (chroSale_DSM3043) Chuck-will's-widow Jun 2014
(ASM70074v1/capCar1) (capCar1) Cicer arietinum LIS v1.0 Citrobacter koseri ATCC
BAA-895 (12716) Citrullus lanatus Cucurbit Genomics Database Citrullus lanatus
Cucurbit Genomics Database v1.0 Citrus clementina JGI v1.0 Citrus sinensis JGI
v1 assembly and v1.0 annotation Clavibacter michiganensis subsp. michiganensis
NCPPB 382 (clavMich_NCPPB_382) Clavibacter michiganensis subsp. sepedonicus
(184) Clostridium acetobutylicum ATCC 824 (77) Clostridium beijerinckii NCIMB
8052 (12637) Clostridium botulinum A str. ATCC 19397 (19517) Clostridium
botulinum A str. ATCC 3502 (193) Clostridium botulinum A str. Hall (19521)
Clostridium botulinum A3 str. Loch Maree (28507) Clostridium botulinum B1 str.
Okra (28505) Clostridium botulinum F str. Langeland (19519) Clostridium
difficile 630 (78) Clostridium kluyveri DSM 555 (19065) Clostridium novyi NT
(16820) Clostridium perfringens ATCC 13124 (304) Clostridium perfringens SM101
(12521) Clostridium perfringens str. 13 (79) Clostridium phytofermentans ISDg
(16184) Clostridium tetani E88 (81) Clostridium thermocellum ATCC 27405 (314)
Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) Coffea canephora Coffee Genome
Hub v1 Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) Colwellia
psychrerythraea 34H (colwPsyc_34H) Common cuckoo Jun 2014 (ASM70932v1/cucCan1)
(cucCan1) Corchorus olitorius GenBank v1.0 Corynebacterium diphtheriae NCTC
13129 (87) Corynebacterium efficiens YS-314 (coryEffi_YS_314) Corynebacterium
glutamicum ATCC 13032 (13760) Corynebacterium glutamicum ATCC 13032 (307)
Corynebacterium glutamicum R (19193) Corynebacterium jeikeium K411 (13967) Cow
Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) Cow Apr. 2018 (ARS-UCD1.2/bosTau9)
(bosTau9) Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) Cow Aug. 2009 (UMD3.1)
(bosTauMd3) Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) (bosTau8) Cow Mar. 2005
(Baylor 2.0/bosTau2) (bosTau2) Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6)
(bosTau6) Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) Cow Oct. 2011 (Baylor
Btau_4.6.1/bosTau7) (bosTau7) Coxiella burnetii Dugway 5J108-111 (16721)
Coxiella burnetii RSA 331 (16791) Coxiella burnetii RSA 493 (coxiBurn)
Crab-eating macaque Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (macFas5)
Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) Crowned crain Jun 2014
(ASM70989v1/balPav1) (balPav1) Cuckoo roller May 2014 (ASM69178v1/lepDis1)
(lepDis1) Cucumis melo Melonomics v3.5 Cucumis sativus L. JGI v1.0 Cytophaga
hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) D. albomicans 21 May 2012
(DroAlb_1.0/droAlb1) (droAlb1) D. ananassae Aug. 2005 (Agencourt prelim/droAna2)
(droAna2) D. ananassae Feb. 2006 (droAna3) D. ananassae July 2004 (TIGR/droAna1)
(droAna1) D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) D. bipectinata
04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) D. elegans 04 Mar 2013
(Dele_2.0/droEle2) (droEle2) D. erecta Aug. 2005 (Agencourt prelim/droEre1)
(droEre1) D. erecta Feb. 2006 (droEre2) D. eugracilis 04 Mar 2013
(Deug_2.0/droEug2) (droEug2) D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2)
(droFic2) D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) D.
grimshawi Feb. 2006 (droGri2) D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2)
(droKik2) D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) D. melanogaster Apr.
2006 (BDGP R5/dm3) (dm3) D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1
MT/dm6) (dm6) D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) D. miranda 19 Apr
2013 (DroMir_2.2/droMir2) (droMir2) D. mojavensis Aug. 2004 (Agencourt
prelim/droMoj1) (droMoj1) D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2)
(droMoj2) D. mojavensis Feb. 2006 (droMoj3) D. persimilis Oct. 2005
(Broad/droPer1) (droPer1) D. pseudoobscura (dp4) (dp4) D. pseudoobscura 11 Apr
2013 (Dpse_3.0/droPse3) (droPse3) D. pseudoobscura Aug. 2003 (Baylor
freeze1/dp2) (dp2) D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) D.
rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) D. sechellia Oct. 2005
(Broad/droSec1) (droSec1) D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1)
(droSim1) D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) D. takahashii
04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) D. virilis Aug. 2005 (Agencourt
prelim/droVir2) (droVir2) D. virilis Feb. 2006 (droVir3) D. virilis July 2004
(Agencourt prelim/droVir1) (droVir1) D. willistoni 03 Aug 2006
(dwil_caf1/droWil2) (droWil2) D. willistoni Feb. 2006 (droWil1) D. yakuba 27 Jun
2006 (dyak_caf1/droYak3) (droYak3) D. yakuba Apr. 2004 (WUGSC 1.0/droYak1)
(droYak1) D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) Dalmatian pelican
May 2014 (ASM68737v1/pelCri1) (pelCri1) Daucus carota JGI v2.0 David's myotis
(bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) Dechloromonas aromatica RCB
(dechArom_RCB) Deer Tick (Ixodes scapularis) (IscaW1) Dehalococcoides
ethenogenes 195 (dehaEthe_195) Dehalococcoides sp. BAV1 (15770) Dehalococcoides
sp. CBDB1 (15604) Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300)
Deinococcus radiodurans R1 (deinRadi) Delftia acidovorans SPH-1 (17413)
Desulfitobacterium hafniense Y51 (desuHafn_Y51) Desulfococcus oleovorans Hxd3
(18007) Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) Desulfotomaculum
reducens MI-1 (desuRedu_MI_1) Desulfovibrio desulfuricans G20 (329)
Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) Desulfovibrio vulgaris subsp.
vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) Dichelobacter nodosus
VCS1703A (dichNodo_VCS1703A) Dinoroseobacter shibae DFL 12 (17417) Dog July 2004
(Broad/canFam1) (canFam1) Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) Dog
May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) Dog May 2005
(Broad/canFam2) (canFam2) Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) Dog
Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) Dolphin Feb. 2008
(Broad/turTru1) (turTru1) Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2)
Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) Downy woodpecker Jun 2014
(ASM69900v1/picPub1) (picPub1) Ebola virus 49 sequences: 5 Ebola, 2 Marburg
strains (eboVir2) Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1)
Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) Ecoref Feb.
2013 (ecoRef3/ecoRef3) (ecoRef3) Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4)
Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) Ecoref Jan. 2013 (ecoRef2/ecoRef2)
(ecoRef2) Ehrlichia canis str. Jake (10694) Ehrlichia chaffeensis str. Arkansas
(325) Ehrlichia ruminantium str. Gardel (13356) Ehrlichia ruminantium str.
Welgevonden (13355) Ehrlichia ruminantium str. Welgevonden
(ehrlRumi_WELGEVONDEN) Elaeis guineensis EG5.1 Elaeis guineensis NCBI Genome
v1.0 Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) Elephant Jul. 2009
(Broad/loxAfr3) (loxAfr3) Elephant May 2005 (Broad/loxAfr1) (loxAfr1) Elephant
shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) Emperor penguin 06
Jun 2014 (ASM69914v1/aptFor1) (aptFor1) Enterobacter sakazakii ATCC BAA-894
(12720) Enterobacter sp. 638 (ente638) Enterococcus faecalis V583
(enteFaec_V583) Erythranthe guttata JGI v2.0 Erythrobacter litoralis HTCC2594
(erytLito_HTCC2594) Escherichia coli 536 (16235) Escherichia coli APEC O1
(eschColi_APEC_O1) Escherichia coli C str. ATCC 8739 (18083) Escherichia coli
CFT073 (eschColi_CFT073) Escherichia coli DH10B (20079) Escherichia coli E24377A
(13960) Escherichia coli EC4115 (eschColi_EC4115) Escherichia coli HS (13959)
Escherichia coli K12 (eschColi_K12) Escherichia coli O157:H7 EDL933 (259)
Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) Escherichia coli SECEC
SMS-3-5 (19469) Escherichia coli TW14359 (eschColi_TW14359) Escherichia coli
UTI89 (16259) Escherichia coli W3110 (16351) Euarchontoglires Apr. 24. 2006
(UCSC Recon/euaGli13) (euaGli13) Eucalyptus grandis JGI assembly v1.0,
annotation v1.1 Eucalyptus grandis JGI v2.0 European sea bass Apr 2014
(seabass_V1.0/dicLab1) (dicLab1) Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13)
(eutHer13) Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) Ferret Apr. 2011
(MusPutFur1.0/musFur1) (musFur1) Fervidobacterium nodosum Rt17-B1 (16719)
Finegoldia magna ATCC 29328 (18981) Fission Yeast (S. pombe)
(Schizosaccharomyces_pombe_1.1) Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1)
(sebRub1) Flavobacterium johnsoniae UW101 (flavJohn_UW101) Flavobacterium
psychrophilum JIP02/86 (19979) Foshan strain genomic contigs sequences, AaloF1
assembly. Fragaria vesca JGI v1.1 Fragaria vesca Strawberry Genome 1.0
Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) Francisella
tularensis subsp. holarctica (16421) Francisella tularensis subsp. holarctica
FTA (20197) Francisella tularensis subsp. holarctica OSU18 (17265) Francisella
tularensis subsp. novicida U112 (16088) Francisella tularensis subsp. tularensis
FSC198 (17375) Francisella tularensis subsp. tularensis SCHU S4
(franTula_TULARENSIS) Francisella tularensis subsp. tularensis WY96-3418 (18459)
Frankia alni ACN14a (17403) Frankia sp. CcI3 (franCcI3) Frankia sp. EAN1pec
(13915) Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) Fugu Oct. 2004 (JGI 4.0/fr2) (fr2)
Fugu Oct. 2011 (FUGU5/fr3) (fr3) Fusobacterium nucleatum subsp. nucleatum ATCC
25586 (fusoNucl) GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2)
GRCh38.p2 Dec 2014 (hg38Patch2) Garter snake Jun. 2015
(Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) Geobacillus kaustophilus HTA426
(geobKaus_HTA426) Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2)
Geobacter metallireducens GS-15 (geobMeta_GS15) Geobacter sulfurreducens PCA
(geobSulf) Geobacter uraniireducens Rf4 (geobUran_RF4) Gharial APR 2009
(preliminary/gavGan0) (gavGan0) Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1)
(nomLeu1) Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) Gibbon Oct. 2012
(GGSC Nleu3.0/nomLeu3) (nomLeu3) Glires Apr. 24. 2006 (UCSC Recon/gliRes13)
(gliRes13) Gloeobacter violaceus PCC 7421 (gloeViol) Gluconacetobacter
diazotrophicus PAl 5 (377) Gluconobacter oxydans 621H (glucOxyd_621H) Glycine
max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly Glycine max
JGI Wm82.a2.v1 Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1)
Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) Golden hamster Mar 2013
(MesAur1.0/mesAur1) (mesAur1) Golden snub-nosed monkey Oct. 2014
(Rrox_v1/rhiRox1) (rhiRox1) Golden-collared manakin May 2014
(ASM69201v1/manVit1) (manVit1) Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2)
Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) Gorilla Dec 2014
(gorGor4.1/gorGor4) (gorGor4) Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5)
Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) Gorilla Oct. 2008 (Sanger
0.1/gorGor1) (gorGor1) Gossypium raimondii JGI annotation v2.1 on assembly v2.0
Gossypium raimondii JGI v2.1 Gramella forsetii KT0803 (gramFors_KT0803)
Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) Grch37.p10 Sep. 2012
(GRCh37.p10/hg19Patch10) (hg19Patch10) Grch37.p5 Jun. 2011
(GRCh37.p5/hg19Patch5) (hg19Patch5) Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9)
(hg19Patch9) Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) Great
cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) Greater horseshoe bat Sep.
2013 (ASM46549v1/rhiFer1) (rhiFer1) Green monkey 25 Mar-2014 (Chlorocebus_sabeus
1.1/chlSab2) (chlSab2) Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1)
Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) Guppy Apr. 2014
(Guppy_female_1.0/poeRet1) (poeRet1) H. contortus Dec. 2009 (WormBase
WS210/haeCon1) (haeCon1) Haemophilus ducreyi 35000HP (38) Haemophilus influenzae
86-028NP (11752) Haemophilus influenzae PittEE (16400) Haemophilus influenzae
PittGG (16401) Haemophilus influenzae Rd KW20 (haemInfl_KW20) Haemophilus somnus
129PT (haemSomn_129PT) Haemophilus somnus 2336 (388) Hahella chejuensis KCTC
2396 (haheChej_KCTC_2396) Haloarcula marismortui ATCC 43049 (halMar1)
Halobacterium salinarum R1 (106) Halobacterium sp. NRC-1 (haloHalo1)
Haloquadratum walsbyi DSM 16790 (haloWals1) Halorhodospira halophila SL1
(haloHalo_SL1) Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) Head
Louse (Pediculus humanus) (PhumU1) Hedgehog June 2006 (Broad/eriEur1) (eriEur1)
Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) Helicobacter acinonychis str.
Sheeba (heliAcin_SHEEBA) Helicobacter hepaticus ATCC 51449 (heliHepa)
Helicobacter pylori 26695 (heliPylo_26695) Helicobacter pylori HPAG1
(heliPylo_HPAG1) Helicobacter pylori J99 (heliPylo_J99) Heliobacterium
modesticaldum Ice1 (13427) Herminiimonas arsenicoxydans (hermArse) Herpetosiphon
aurantiacus ATCC 23779 (16523) Hevea brasiliensis NCBI Genomes v1 Hg19 lgg
inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) Hlaref Apr. 2012
(hlaRefV1/hlaRef1) (hlaRef1) Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2)
Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) Hoatzin May 2014
(ASM69207v1/opiHoa1) (opiHoa1) Hominidae Apr. 24. 2006 (UCSC Recon/homIni13)
(homIni13) Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) Homo Sapiens
(GRCh38) Transcriptome + ERCC Homo sapiens (hg19 with mtDNA replaced with rCRS)
(Homo_sapiens_nuHg19_mtrCRS) Homo sapiens b37 (hg_g1k_v37) Homo sapiens
hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) Honeybee (Apis
mellifera): apiMel3 (apiMel3) Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1)
(corCor1) Hordeum vulgare Ensembl Genomes ASM32608v1 Hordeum vulgare IBC PGSB v2
Hordeum vulgare MIPS Horse Jan. 2007 (Broad/equCab1) (equCab1) Horse Jan. 2018
(EquCab3.0/equCab3) (equCab3) Horse Sep. 2007 (Broad/equCab2) (equCab2) Houbara
bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) Human Apr. 2003 (NCBI33/hg15)
(hg15) Human CHM13 2.0 (T2T Consortium) Jan. 2022 Human Dec. 2013 (GRCh38/hg38)
(hg38) Human Feb. 2009 (GRCh37/hg19) (hg19) Human Jan. 2021 isolate CHM13 (T2T
Consortium) female Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) Human July 2003
(NCBI34/hg16) (hg16) Human Mar. 2006 (NCBI36/hg18) (hg18) Human May 2004
(NCBI35/hg17) (hg17) Human herpesvirus 1 (15217) Human repeats Nov. 2012
(1/repeats2) (repeats2) Hydra magnipapillata str. 105 (Hydra_JCVI) Hyperthermus
butylicus DSM 5456 (hypeButy1) Hyphomonas neptunium ATCC 15444
(hyphNept_ATCC15444) Idiomarina loihiensis L2TR (idioLoih_L2TR) Ignicoccus
hospitalis KIN4/I (13914) Indian false vampire Sep. 2013 (ASM46534v1/megLyr1)
(megLyr1) Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) J. Craig Venter
Sep. 2007 (HuRef/venter1) (venter1) Jannaschia sp. CCS1 (jannCCS1)
Janthinobacterium sp. Marseille (16549) Japanese eel 18 Mar-2014
(japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1)
(angJap1) Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) Kangaroo rat
Jul. 2008 (Broad/dipOrd1) (dipOrd1) Killdeer Aug 2014 (ASM70802v2/chaVoc2)
(chaVoc2) Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) Killer whale Jan 2013
(Oorc_1.1/orcOrc1) (orcOrc1) Kineococcus radiotolerans SRS30216 (10689) Kirref
Apr. 2011 (kirRef/kirRef) (kirRef) Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2)
(kirRefV2) Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) Kirrefv4 Apr. 2011
(kirRefV4/kirRefV4) (kirRefV4) Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) Korean Man
(Homo_sapiens_AK1) Lactobacillus acidophilus NCFM (82) Lactobacillus brevis ATCC
367 (404) Lactobacillus casei ATCC 334 (402) Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842 (16871) Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365 (403) Lactobacillus gasseri ATCC 33323 (84) Lactobacillus helveticus DPC
4571 (17811) Lactobacillus johnsonii NCC 533 (9638) Lactobacillus plantarum
WCFS1 (lactPlan) Lactobacillus reuteri F275 (15766) Lactobacillus sakei subsp.
sakei 23K (13435) Lactobacillus salivarius UCC118 (lactSali_UCC118) Lactococcus
lactis subsp. cremoris MG1363 (18797) Lactococcus lactis subsp. cremoris SK11
(401) Lactococcus lactis subsp. lactis Il1403 (lactLact) Lamprey Dec. 2017
(Pmar_germline 1.0/petMar3) (petMar3) Lamprey Mar. 2007 (WUGSC 3.0/petMar1)
(petMar1) Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) Lancelet Apr. 2008
(JGI v2.0/braFlo2) (braFlo2) Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1)
Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) Lawsonia
intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) Legionella pneumophila str.
Corby (17491) Legionella pneumophila str. Lens (13126) Legionella pneumophila
str. Paris (13127) Legionella pneumophila subsp. pneumophila str. Philadelphia 1
(legiPneu_PHILADELPHIA) Leifsonia xyli subsp. xyli str. CTCB07
(leifXyli_XYLI_CTCB0) Leishmania major 2005 (lMaj5) Leptospira borgpetersenii
serovar Hardjo-bovis JB197 (16148) Leptospira borgpetersenii serovar
Hardjo-bovis L550 (16146) Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130 (10687) Leptospira interrogans serovar Lai str. 56601 (leptInte)
Leptothrix cholodnii SP-6 (20039) Lesser Egyptian jerboa May 2012
(JacJac1.0/jacJac1) (jacJac1) Leuconostoc citreum KM20 (16062) Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) Limpet Jul.
2013 (lotGig0/lotGig0) (lotGig0) Listeria innocua Clip11262 (listInno) Listeria
monocytogenes EGD-e (276) Listeria monocytogenes str. 4b F2365 (85) Listeria
welshimeri serovar 6b str. SLCC5334 (13443) Little egret May 2014
(ASM68718v1/egrGar1) (egrGar1) Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) Lizard
May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) Lotus japonicus Kazusa 2.5
Lysinibacillus sphaericus C3-41 (19619) M. domestica 22 Apr 2013
(Musca_domestica-2.0.2/musDom2) (musDom2) M. hapla Sep. 2008 (M. hapla VW9
WS210/melHap1) (melHap1) M. incognita Feb. 2008 (M. incognita WS210/melInc1)
(melInc1) MMTV Nov. 2009 (MMTV/mmtv) (mmtv) Magnetococcus sp. MC-1 (magnMC1)
Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) Maize (Zea mays)
(Zea_mays_B73_RefGen_v2) Malayan flying lemur Jun. 2014
(G_variegatus-3.0.2/galVar1) (galVar1) Mallard duck Apr 2013
(BGI_duck_1.0/anaPla1) (anaPla1) Malus domestica IASMA Malus domestica Penguin
Genomics v2 Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) Manihot esculenta
Cassava4 Manihot esculenta JGI v6.1 Mannheimia succiniciproducens MBEL55E
(mannSucc_MBEL55E) Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1)
Marchantia polymorpha JGI v3.1 Maricaulis maris MCS10 (mariMari_MCS10)
Marinobacter aquaeolei VT8 (mariAqua_VT8) Marinomonas sp. MWYL1 (17445) Marmoset
June 2007 (WUGSC 2.0.2/calJac1) (calJac1) Marmoset March 2009 (WUGSC
3.2/calJac3) (calJac3) Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)
(calJac4) Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) Medaka Oct. 2005
(NIG/UT MEDAKA1/oryLat2) (oryLat2) Medicago truncatula JCVI 4.0 Medicago
truncatula JGI Mt4.0v1 Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1)
(geoFor1) Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) Mesoplasma florum L1
(mesoFlor_L1) Mesorhizobium loti MAFF303099 (mesoLoti) Mesorhizobium sp. BNC1
(10690) Metallosphaera sedula DSM 5348 (metaSedu) Methanobrevibacter smithii
ATCC 35061 (methSmit1) Methanocaldococcus jannaschii DSM 2661 (methJann1)
Methanococcoides burtonii DSM 6242 (methBurt2) Methanococcus aeolicus Nankai-3
(methAeol1) Methanococcus maripaludis C5 (methMari_C5_1) Methanococcus
maripaludis C6 (19639) Methanococcus maripaludis C7 (methMari_C7) Methanococcus
maripaludis S2 (metMar1) Methanococcus vannielii SB (methVann1)
Methanocorpusculum labreanum Z (methLabrZ_1) Methanoculleus marisnigri JR1
(mculMari1) Methanopyrus kandleri AV19 (methKand1) Methanosaeta thermophila PT
(methTherPT1) Methanosarcina acetivorans C2A (metAce1) Methanosarcina barkeri
str. Fusaro (methBark1) Methanosarcina mazei Go1 (methMaze1) Methanosphaera
stadtmanae DSM 3091 (methStad1) Methanospirillum hungatei JF-1 (methHung1)
Methanothermobacter thermautotrophicus str. Delta H (methTher1) Methylibium
petroleiphilum PM1 (methPetr_PM1) Methylobacillus flagellatus KT (methFlag_KT)
Methylobacterium extorquens PA1 (18637) Methylobacterium radiotolerans JCM 2831
(18817) Methylobacterium sp. 4-46 (18809) Methylococcus capsulatus str. Bath
(methCaps_BATH) Mexican tetra (cavefish) Apr 2013
(Astyanax_mexicanus-1.0.2/astMex1) (astMex1) Mhcref Apr. 2011
(mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) Mhcref Jan. 2011 (mhcRefV1/mhcRef)
(mhcRef) Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) Mhcref
July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) Mhcref July 2011
(mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) Mhcref July 2011
(mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) Mhcref July 2011
(mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) Mhcref July 2011
(mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) Mhcref July 2011
(mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) Mhcref July 2011
(mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) Mhcref July 2011
(mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) Mhcref July 2011
(mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) Mhcref July 2011
(mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) Mhcref June 2011
(mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) Mhcref June 2011
(mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) Mhcref June 2011
(mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) Mhcref Mar. 2012
(mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) Mhcref Mar. 2012
(mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) Mhcref Mar. 2012
(mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) Mhcref Oct. 2011
(mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) Mhcref Oct. 2011
(mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) Mhcref Oct. 2011
(mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) Mhcref Oct. 2011
(mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) Microbat Jul. 2010 (Broad Institute
Myoluc2.0/myoLuc2) (myoLuc2) Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1)
Microcystis aeruginosa NIES-843 (27835) Micromonas commoda JGI v3.0 Minke whale
Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) Mm10haps Dec. 2011 (Mouse
strains/mm10Strains1) (mm10Strains1) Monkeypox virus MPXV-M5312_HM12_Rivers
(MT903340.1/GCF_014621545.1) (mpxvRivers) Moorella thermoacetica ATCC 39073
(moorTher_ATCC39073) Mosquito (Aedes aegypti) (AaegL1) Mosquito (Anopheles
gambiae) (AgamP3) Mosquito (Culex quinquefasciatus) (CpipJ1) Mouse (Mus
Musculus): mm10 Full Mouse Aug. 2005 (NCBI35/mm7) (mm7) Mouse Feb. 2006
(NCBI36/mm8) (mm8) Mouse July 2007 (NCBI37/mm9) (mm9) Mouse Jun. 2020
(GRCm39/mm39) (mm39) Mouse May 2004 (mm5) Mouse lemur Jul. 2007 (Broad/micMur1)
(micMur1) Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) Musa acuminata
Banana Genome v1.0 Musa acuminata Banana Genome v2.0 Musa acuminata
Genescope-Cirad Mycobacterium abscessus (15691) Mycobacterium avium 104 (88)
Mycobacterium avium subsp. paratuberculosis K-10 (91) Mycobacterium bovis
AF2122/97 (89) Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) Mycobacterium
gilvum PYR-GCK (15760) Mycobacterium leprae TN (90) Mycobacterium smegmatis str.
MC2 155 (92) Mycobacterium sp. JLS (16079) Mycobacterium sp. KMS (16081)
Mycobacterium sp. MCS (15762) Mycobacterium tuberculosis CDC1551 (223)
Mycobacterium tuberculosis F11 (15642) Mycobacterium tuberculosis H37Ra (18883)
Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) Mycobacterium ulcerans Agy99
(16230) Mycobacterium vanbaalenii PYR-1 (15761) Mycoplasma agalactiae PG2
(16095) Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) Mycoplasma
gallisepticum R (409) Mycoplasma genitalium G37 (mycoGeni) Mycoplasma
hyopneumoniae 232 (13120) Mycoplasma hyopneumoniae 7448 (10639) Mycoplasma
hyopneumoniae J (10675) Mycoplasma mobile 163K (10697) Mycoplasma mycoides
subsp. mycoides SC str. PG1 (10616) Mycoplasma penetrans HF-2 (176) Mycoplasma
pneumoniae M129 (99) Mycoplasma pulmonis UAB CTIP (100) Mycoplasma synoviae 53
(10676) Myxococcus xanthus DK 1622 (myxoXant_DK_1622) Naked mole-rat Jan. 2012
(Broad HetGla_female_1.0/hetGla2) (hetGla2) Naked mole-rat Jul. 2011 (BGI
HetGla_1.0/hetGla1) (hetGla1) Nanoarchaeum equitans Kin4-M (nanEqu1)
Natronomonas pharaonis DSM 2160 (natrPhar1) Neisseria gonorrhoeae FA 1090
(neisGono_FA1090_1) Neisseria meningitidis 053442 (16393) Neisseria meningitidis
FAM18 (neisMeni_FAM18_1) Neisseria meningitidis MC58 (neisMeni_MC58_1) Neisseria
meningitidis Z2491 (neisMeni_Z2491_1) Nelumbo nucifera LOTUS-DB v1.1
Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) Nile tilapia Jan. 2011
(Broad oreNil1.0/oreNil1) (oreNil1) Nile tilapia Jan. 2011 (Broad
oreNil1.1/oreNil2) (oreNil2) Nitratiruptor sp. SB155-2 (18963) Nitrobacter
hamburgensis X14 (13473) Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255)
Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) Nitrosomonas europaea ATCC
19718 (nitrEuro) Nitrosomonas eutropha C91 (13913) Nitrosopumilus maritimus SCM1
(19265) Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) Nocardia
farcinica IFM 10152 (nocaFarc_IFM10152) Nocardioides sp. JS614 (nocaJS61)
Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) Northern carmine
bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) Northern fulmar May 2014
(ASM69083v1/fulGla1) (fulGla1) Northern pike Jul 2014 (EsoLuc1.0/esoLuc1)
(esoLuc1) Nostoc sp. PCC 7120 (nostSp) Notyet Oct. 2011 (notYet1/calMil0)
(calMil0) Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444)
Oceanobacillus iheyensis HTE831 (oceaIhey) Ochrobactrum anthropi ATCC 49188
(19485) Oenococcus oeni PSU-1 (oenoOeni_PSU_1) Oikopleura dioica (od01) Onion
yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) Opossum Jan. 2006
(Broad/monDom4) (monDom4) Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1)
Opossum Oct. 2006 (Broad/monDom5) (monDom5) Orangutan Jan. 2018
(Susie_PABv2/ponAbe3) (ponAbe3) Orangutan July 2007 (WUGSC 2.0.2/ponAbe2)
(ponAbe2) Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) Oropetium
thomaeum JGI v1.0 Oryza brachyantha Ensembl Plants v1.4b Oryza sativa ssp.
indica 9311_BGF_2005 Oryza sativa ssp. indica MBKBASE v1.0 Oryza sativa ssp.
japonica JGI v7.0 Oryza sativa ssp. japonica MSU RGAP 7 Ostreococcus lucimarinus
JGI 2.0 Ostreococcus lucimarinus JGI v2.0 assembly and annotation Ostrich 06
Jun-2014 (ASM69896v1/strCam1) (strCam1) P. falciparum Plasmodium falciparum
(?/falciparum) (falciparum) P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2)
(priPac2) P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) Pacific walrus
Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) Painted turtle Dec. 2011
(v3.0.1/chrPic1) (chrPic1) Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2)
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) Parabacteroides distasonis
ATCC 8503 (13485) Paracoccus denitrificans PD1222 (paraDeni_PD1222) Parnell's
mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) Parrot Jan. 2013
(AV1/amaVit1) (amaVit1) Parvibaculum lavamentivorans DS-1 (17639) Pasteurella
multocida subsp. multocida str. Pm70 (pastMult) Pectobacterium atrosepticum
SCRI1043 (erwiCaro_ATROSEPTICA) Pediococcus pentosaceus ATCC 25745
(pediPent_ATCC25745) Pelobacter carbinolicus DSM 2380 (peloCarb) Pelobacter
propionicus DSM 2379 (13384) Pelodictyon luteolum DSM 273 (peloLute_DSM273)
Pelotomaculum thermopropionicum SI (peloTher_SI) Peregrine falcon Feb 2013
(F_peregrinus_v1.0/falPer1) (falPer1) Petrotoga mobilis SJ95 (17679) Petunia
axillaris Sol Genomics v1.6.2 Phalaenopsis equestris Genomics v1.0
Photobacterium profundum SS9 (photProf_SS9) Photorhabdus luminescens subsp.
laumondii TTO1 (photLumi) Phyllostachys edulis NCGR v1.0 Physcomitrella patens
JGI assembly release v1.1 and COSMOSS annotation v1.6 Physcomitrella patens JGI
v3.3 Picrophilus torridus DSM 9790 (picrTorr1) Pig Aug. 2011 (SGSC
Sscrofa10.2/susScr3) (susScr3) Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11)
Pig May 2010 (Sscrofa9.58) Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2)
Pika Jul. 2008 (Broad/ochPri2) (ochPri2) Pika May 2012 (OchPri3.0/ochPri3)
(ochPri3) Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12)
(plasFalc3D7V12) Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) Platypus Mar.
2007 (WUGSC 5.0.1/ornAna1) (ornAna1) Polar bear 09 May-2014 (UrsMar_1.0/ursMar1)
(ursMar1) Polaromonas naphthalenivorans CJ2 (13418) Polaromonas sp. JS666
(polaJS66) Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) Poplar (Populus
trichocarpa) (Ptrichocarpa_156) Populus trichocarpa JGI assembly release v3.0,
annotation v3.0 Populus trichocarpa JGI v3.1 Porphyromonas gingivalis W83
(porpGing_W83) Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1)
Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) Primate Apr. 24. 2006 (UCSC
Recon/priMat13) (priMat13) Princess of Burundi May 2011 (NeoBri1.0/neoBri1)
(neoBri1) Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1)
Prochlorococcus marinus str. AS9601 (13548) Prochlorococcus marinus str. MIT
9211 (13551) Prochlorococcus marinus str. MIT 9215 (18633) Prochlorococcus
marinus str. MIT 9301 (15746) Prochlorococcus marinus str. MIT 9303 (13496)
Prochlorococcus marinus str. MIT 9312 (13910) Prochlorococcus marinus str. MIT
9313 (220) Prochlorococcus marinus str. MIT 9515 (13617) Prochlorococcus marinus
str. NATL1A (15660) Prochlorococcus marinus str. NATL2A (13911) Prochlorococcus
marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) Prochlorococcus marinus
subsp. pastoris str. CCMP1986 (213) Propionibacterium acnes KPA171202
(propAcne_KPA171202) Prosthecochloris vibrioformis DSM 265 (12607) Prunus
persica JGI release v1.0 Prunus persica JGI v2.1 Przewalski horse Jun 2014
(Burgud/equPrz1) (equPrz1) Pseudoalteromonas atlantica T6c (13454)
Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) Pseudomonas aeruginosa
PA7 (16720) Pseudomonas aeruginosa PAO1 (pseuAeru) Pseudomonas aeruginosa
UCBPP-PA14 (386) Pseudomonas entomophila L48 (16800) Pseudomonas fluorescens
Pf-5 (327) Pseudomonas fluorescens PfO-1 (12) Pseudomonas mendocina ymp (17457)
Pseudomonas putida F1 (13909) Pseudomonas putida GB-1 (17629) Pseudomonas putida
KT2440 (267) Pseudomonas putida W619 (17053) Pseudomonas stutzeri A1501 (16817)
Pseudomonas syringae pv. phaseolicola 1448A (12416) Pseudomonas syringae pv.
syringae B728a (323) Pseudomonas syringae pv. tomato str. DC3000 (359)
Psychrobacter arcticus 273-4 (psycArct_273_4) Psychrobacter cryohalolentis K5
(13920) Psychrobacter sp. PRwf-1 (15759) Psychromonas ingrahamii 37
(psycIngr_37) Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) Purple
Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) Pyrobaculum
aerophilum str. IM2 (pyrAer1) Pyrobaculum arsenaticum DSM 13514 (pyroArse1)
Pyrobaculum calidifontis JCM 11548 (pyroCali1) Pyrobaculum islandicum DSM 4184
(pyroIsla1) Pyrococcus abyssi GE5 (pyrAby1) Pyrococcus furiosus DSM 3638
(pyrFur2) Pyrococcus horikoshii OT3 (pyrHor1) Pyrus bretschneideri Pear Genome
Project v1.0 Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2) Rabbit May 2005
(Broad/oryCun1) (oryCun1) Ralstonia eutropha H16 (13603) Ralstonia eutropha
JMP134 (ralsEutr_JMP134) Ralstonia metallidurans CH34 (250) Ralstonia
solanacearum GMI1000 (ralsSola) Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) Rat June 2003
(Baylor 3.1/rn3) (rn3) Rat Mar. 2012 (RGSC 5.0/rn5) (rn5) Rat Nov. 2004 (Baylor
3.4/rn4) (rn4) Rat Nov. 2020 (mRatBN7.2/rn7) (rn7) Red Flour Beetle (Tribolium
castaneum) (Tcas_3.0) Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1)
Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) Red-throated loon May
2014 (ASM69087v1/gavSte1) (gavSte1) Renibacterium salmoninarum ATCC 33209
(19227) RepBase Jun. 2012 (hg19/repBase0) (repBase0) RepBase Sep. 2012
(17.08/repBase1) (repBase1) Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1)
(resEbo1) Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) Rhesus Jan. 2006 (MGSC
Merged 1.0/rheMac2) (rheMac2) Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7)
(rheMac7) Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) Rhesus Oct. 2010
(BGI CR_1.0/rheMac3) (rheMac3) Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1)
(bucRhi1) Rhizobium etli CFN 42 (rhizEtli_CFN_42) Rhizobium leguminosarum bv.
viciae 3841 (344) Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) Rhodobacter
sphaeroides ATCC 17025 (15755) Rhodobacter sphaeroides ATCC 17029 (15754)
Rhodococcus sp. RHA1 (rhodRHA1) Rhodoferax ferrireducens T118 (13908)
Rhodopirellula baltica SH 1 (pireSp) Rhodopseudomonas palustris BisA53 (15751)
Rhodopseudomonas palustris BisB18 (15750) Rhodopseudomonas palustris BisB5
(15749) Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) Rhodopseudomonas
palustris HaA2 (15747) Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170)
Rice (Oryza sativa ssp. japonica var. Nipponbare)
(oryza_sativa_japonica_nipponbare_IRGSP4.0) Ricinus communis JCVI 1.0 Ricinus
communis JGI v0.1 Rickettsia akari str. Hartford (12953) Rickettsia bellii OSU
85-389 (17237) Rickettsia bellii RML369-C (rickBell_RML369_C) Rickettsia
canadensis str. McKiel (12952) Rickettsia conorii str. Malish 7 (42) Rickettsia
felis URRWXCal2 (13884) Rickettsia massiliae MTU5 (18271) Rickettsia prowazekii
str. Madrid E (43) Rickettsia rickettsii str. 'Sheila Smith' (9636) Rickettsia
rickettsii str. Iowa (19943) Rickettsia typhi str. Wilmington (10679) Rifleman
27 May 2014 (ASM69581v1/acaChl1) (acaChl1) Rock hyrax Jul. 2008 (Broad/proCap1)
(proCap1) Rock pigeon Dec 2017 (Cliv_2.1/colLiv2) Rock pigeon Feb 2013
(Cliv_1.0/colLiv1) (colLiv1) Rodent Apr. 24. 2006 (UCSC Recon/rodEnt13)
(rodEnt13) Roseiflexus castenholzii DSM 13941 (13462) Roseiflexus sp. RS-1
(16190) Roseobacter denitrificans OCh 114 (roseDeni_OCH_114) Rubrobacter
xylanophilus DSM 9941 (rubrXyla_DSM9941) S. cerevisae str. S288C
(Saccharomyces_cerevisiae_S288C_SGD2010) S. cerevisiae Apr. 2011
(SacCer_Apr2011/sacCer3) (sacCer3) S. cerevisiae June 2008 (SGD/sacCer2)
(sacCer2) S. cerevisiae Oct. 2003 (SGD/sacCer1) (sacCer1) S. lycopersicum
(Tomato) Feb 2019 (SL4.0) S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1)
S. purpuratus Feb. 2009 (BCM-HGSC Spur_v2.5/strPur3) (strPur3) S. purpuratus
Jun. 2011 (BCM-HGSC Spur_v3.1/strPur4) (strPur4) S. purpuratus Sep. 2006 (Baylor
2.1/strPur2) (strPur2) S.enterica_NC_016810.1 SARS coronavirus Apr. 2003
(GenBank Apr. 14 '03/sc1) (sc1) SARS-CoV-2 Jan. 2020 (NC_045512.2) (wuhCor1)
SARS-CoV-2 isolate Wuhan-Hu-1, complete genome (NC_045512) Saccharophagus
degradans 2-40 (saccDegr_2_40) Saccharopolyspora erythraea NRRL 2338
(saccEryt_NRRL_2338) Saccharum spontaneum v20190103 Saker falcon Feb 2013
(F_cherrug_v1.0/falChe1) (falChe1) Salinibacter ruber DSM 13855
(saliRube_DSM13855) Salinispora arenicola CNS-205 (17109) Salinispora tropica
CNB-440 (saliTrop_CNB_440) Salmonella enterica (NC_016810.1) Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- (13030) Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67 (9618) Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150 (salmEnte_PARATYPI_ATC) Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7 (27803) Salmonella enterica subsp.
enterica serovar Typhi str. CT18 (salmTyph) Salmonella enterica subsp. enterica
serovar Typhi str. Ty2 (salmTyph_TY2) Salmonella typhimurium LT2 (241) Saltwater
crocodile June 2011 (UCSC cPoro_v0.1c45/croPor0) (croPor0) Scarlet Macaw Jun
2013 (SMACv1.1/araMac1) (araMac1) Schrenkiella parvula Thellungiella v2.0
(TpV84) Sea hare Jul. 2013 (aplCal0/aplCal0) (aplCal0) Sea hare Sept. 2008
(Broad 2.0/aplCal1) (aplCal1) Selaginella moellendorffii JGI v1.0 Selaginella
moellendorffii NCBIr100 Serratia proteamaculans 568 (17459) Setaria italica JGI
8.3X chromosome-scale assembly release 2.0, annotation version 2.1 Setaria
italica JGI v2.2 Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) (oviAri3) Sheep Feb.
2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1) Sheep Nov. 2015 (Oar_v4.0/oviAri4)
(oviAri4) Sheepshead minnow Jul 2014 (C_variegatus-1.0/cypVar1) (cypVar1)
Shewanella amazonensis SB2B (shewAmaz) Shewanella baltica OS155 (shewBalt)
Shewanella baltica OS185 (17643) Shewanella baltica OS195 (13389) Shewanella
denitrificans OS217 (shewDeni) Shewanella frigidimarina NCIMB 400 (shewFrig)
Shewanella halifaxensis HAW-EB4 (20241) Shewanella loihica PV-4 (shewLoihPV4)
Shewanella oneidensis MR-1 (shewOnei) Shewanella pealeana ATCC 700345 (17415)
Shewanella putrefaciens CN-32 (shewPutrCN32) Shewanella sediminis HAW-EB3
(18789) Shewanella sp. ANA-3 (shewANA3) Shewanella sp. MR-4 (shewMR4) Shewanella
sp. MR-7 (shewMR7) Shewanella sp. W3-18-1 (shewW318) Shewanella woodyi ATCC
51908 (17455) Shigella boydii Sb227 (13146) Shigella dysenteriae Sd197 (13145)
Shigella flexneri 2a str. 2457T (408) Shigella flexneri 2a str. 301
(shigFlex_2A) Shigella flexneri 5 str. 8401 (16375) Shigella sonnei Ss046
(13151) Shrew Aug. 2008 (Broad/sorAra2) (sorAra2) Shrew June 2006
(Broad/sorAra1) (sorAra1) Silicibacter pomeroyi DSS-3 (siliPome_DSS_3)
Silicibacter sp. TM1040 (13040) Silkworm (Bombyx_mori_p50T_2.0) Simhuman Oct.
2011 (simHuman/simHuman) (simHuman) Simhumanmammal Oct. 2011
(simHumanMammal/simHumanMammal) (simHumanMammal) Simmam Jan. 2011
(SimMamV1/simHumanMam) (simHumanMam) Simprim Jan. 2011 (SimPrimV1/simHumanPrim)
(simHumanPrim) Simrefmam Jan. 2011 (SimRefMamV1/simRefMam) (simRefMam)
Sinorhizobium medicae WSM419 (16304) Sinorhizobium meliloti 1021 (sinoMeli)
Sloth Jul. 2008 (Broad/choHof1) (choHof1) Snail Jun. 2013 (bioGla0/bioGla0)
(bioGla0) Sodalis glossinidius str. 'morsitans' (sodaGlos_MORSITANS) Solanum
lycopersicum ITAG 2.3 Solanum lycopersicum Sol Genomics itag2.4 Solanum
tuberosum ITAG 001 Solanum tuberosum JGI v4.03 Solibacter usitatus Ellin6076
(soliUsit_ELLIN6076) Sorangium cellulosum 'So ce 56' (28111) Sorghum bicolor JGI
1.4 Sorghum bicolor JGI v3.1 Southern platyfish Jan 2012
(Xiphophorus_maculatus-4.4.2/xipMac1) (xipMac1) Southern sea otter Jun. 2019
(ASM641071v1/enhLutNer1) (enhLutNer1) Speckled mousebird May 2014
(ASM69071v1/colStr1) (colStr1) Sperm whale Sep. 2013
(Physeter_macrocephalus-2.0.2/phyCat1) (phyCat1) Sphingomonas wittichii RW1
(17343) Sphingopyxis alaskensis RB2256 (sphiAlas_RB2256) Spiny softshell turtle
May 2013 (ASM38561v1/apaSpi1) (apaSpi1) Spirodela polyrhiza JGI v2.0 Spotted gar
Dec 2011 (LepOcu1/lepOcu1) (lepOcu1) Squirrel Feb. 2008 (Broad/speTri1)
(speTri1) Squirrel Nov. 2011 (Broad/speTri2) (speTri2) Squirrel monkey Oct. 2011
(Broad/saiBol1) (saiBol1) Staphylococcus aureus RF122 (63) Staphylococcus aureus
subsp. aureus COL (238) Staphylococcus aureus subsp. aureus JH1 (15758)
Staphylococcus aureus subsp. aureus JH9 (15757) Staphylococcus aureus subsp.
aureus MRSA252 (265) Staphylococcus aureus subsp. aureus MSSA476 (266)
Staphylococcus aureus subsp. aureus MW2 (306) Staphylococcus aureus subsp.
aureus Mu3 (18509) Staphylococcus aureus subsp. aureus Mu50 (stapAure_MU50)
Staphylococcus aureus subsp. aureus N315 (264) Staphylococcus aureus subsp.
aureus NCTC 8325 (237) Staphylococcus aureus subsp. aureus USA300 (16313)
Staphylococcus aureus subsp. aureus USA300_TCH1516 (19489) Staphylococcus aureus
subsp. aureus str. Newman (18801) Staphylococcus epidermidis ATCC 12228 (279)
Staphylococcus epidermidis RP62A (64) Staphylococcus haemolyticus JCSC1435
(12508) Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (15596)
Staphylothermus marinus F1 (stapMari1) Star-nosed mole Mar 2012
(ConCri1.0/conCri1) (conCri1) Starlet sea anemone Jun. 2007 (JGI-PDF/nemVec1)
(nemVec1) Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1) Straw colored fruit
bat 13 Sep 2013 (ASM46528v1/eidHel1) (eidHel1) Streptococcus agalactiae 2603V/R
(330) Streptococcus agalactiae A909 (326) Streptococcus agalactiae NEM316 (334)
Streptococcus gordonii str. Challis substr. CH1 (66) Streptococcus mutans UA159
(333) Streptococcus pneumoniae D39 (16374) Streptococcus pneumoniae Hungary19A-6
(28035) Streptococcus pneumoniae R6 (278) Streptococcus pneumoniae TIGR4 (277)
Streptococcus pyogenes M1 GAS (strePyog_M1_GAS) Streptococcus pyogenes MGAS10270
(16364) Streptococcus pyogenes MGAS10394 (12469) Streptococcus pyogenes
MGAS10750 (16366) Streptococcus pyogenes MGAS2096 (16365) Streptococcus pyogenes
MGAS315 (311) Streptococcus pyogenes MGAS5005 (13888) Streptococcus pyogenes
MGAS6180 (13887) Streptococcus pyogenes MGAS8232 (286) Streptococcus pyogenes
MGAS9429 (16363) Streptococcus pyogenes SSI-1 (301) Streptococcus pyogenes str.
Manfredo (270) Streptococcus sanguinis SK36 (13942) Streptococcus suis 05ZYH33
(17153) Streptococcus suis 98HAH33 (17155) Streptococcus thermophilus CNRZ1066
(13163) Streptococcus thermophilus LMD-9 (13773) Streptococcus thermophilus LMG
18311 (13162) Streptomyces avermitilis MA-4680 (189) Streptomyces coelicolor
A3(2) (streCoel) Sudan ebolavirus Aug. 2014 (NC_006432.1/sudEbo1) (sudEbo1)
Sulfolobus acidocaldarius DSM 639 (sulfAcid1) Sulfolobus solfataricus P2
(sulSol1) Sulfolobus tokodaii str. 7 (sulfToko1) Sulfurimonas denitrificans DSM
1251 (thioDeni_ATCC33889) Sulfurovum sp. NBC37-1 (18965) Sunbittern May 2014
(ASM69077v1/eurHel1) (eurHel1) Symbiobacterium thermophilum IAM 14863
(symbTher_IAM14863) Synechococcus elongatus PCC 6301 (13282) Synechococcus
elongatus PCC 7942 (10645) Synechococcus sp. CC9311 (12530) Synechococcus sp.
CC9605 (13643) Synechococcus sp. CC9902 (13655) Synechococcus sp.
JA-2-3B'a(2-13) (16252) Synechococcus sp. JA-3-3Ab (16251) Synechococcus sp. PCC
7002 (28247) Synechococcus sp. RCC307 (13654) Synechococcus sp. WH 7803 (13642)
Synechococcus sp. WH 8102 (syneSp_WH8102) Synechocystis sp. PCC 6803 (synePCC6)
Syntrophobacter fumaroxidans MPOB (syntFuma_MPOB) Syntrophomonas wolfei subsp.
wolfei str. Goettingen (syntWolf_GOETTINGEN) Syntrophus aciditrophicus SB
(syntAcid_SB) T. castaneum Sep. 2005 (Baylor 2.0/triCas2) (triCas2) Tai forest
ebolavirus Aug. 2014 (NC_014372.1/taiEbo1) (taiEbo1) Tarenaya hassleriana RefSeq
v1 Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1) Tarsier Sep. 2013
(Tarsius_syrichta-2.0.1/tarSyr2) (tarSyr2) Tasmanian devil Feb. 2011 (WTSI
Devil_ref v7.0/sarHar1) (sarHar1) Tenrec July 2005 (Broad/echTel1) (echTel1)
Tenrec Nov. 2012 (Broad/echTel2) (echTel2) Tetraodon Feb. 2004 (Genoscope
7/tetNig1) (tetNig1) Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2)
Thellungiella parvula TpV84 Theobroma cacao D. Gilbert public gene set 8 Mar
2012 on assembly v1.1 Theobroma cacao Dec 2010 (CIRAD/Theobroma cacao Belizian
Criollo) (Tcacao_1.0) Theobroma cacao RefSeq v1.1 Thermoanaerobacter
pseudethanolicus ATCC 33223 (13901) Thermoanaerobacter sp. X514 (16394)
Thermoanaerobacter tengcongensis MB4 (therTeng) Thermobifida fusca YX
(therFusc_YX) Thermococcus kodakarensis KOD1 (therKoda1) Thermofilum pendens Hrk
5 (therPend1) Thermoplasma acidophilum DSM 1728 (therAcid1) Thermoplasma
volcanium GSS1 (therVolc1) Thermosipho melanesiensis BI429 (17249)
Thermosynechococcus elongatus BP-1 (therElon) Thermotoga lettingae TMO (15644)
Thermotoga maritima MSB8 (therMari) Thermotoga petrophila RKU-1 (therPetr_RKU_1)
Thermotoga sp. RQ2 (19543) Thermus thermophilus HB27 (therTher_HB27) Thermus
thermophilus HB8 (therTher_HB8) Thiobacillus denitrificans ATCC 25259
(thioDeni_ATCC25259) Thiomicrospira crunogena XCL-2 (thioCrun_XCL_2) Tibetan
antelope May 2013 (PHO1.0/panHod1) (panHod1) Tibetan frog Mar. 2015
(BGI_ZX_2015/nanPar1) (nanPar1) Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1)
(pseHum1) Tiger rockfish 22 Oct-2013 (Snig1.0/sebNig1) (sebNig1) Tongue sole 28
Jan-2014 (Cse_v1.0/cynSem1) (cynSem1) Tree shrew Dec. 2006 (Broad/tupBel1)
(tupBel1) Treponema denticola ATCC 35405 (4) Treponema pallidum subsp. pallidum
str. Nichols (trepPall) Trichodesmium erythraeum IMS101 (tricEryt_IMS101)
Trifolium pratense JGI v2 Triticum aestivum Ensembl Plants TGACv1 Triticum
aestivum IWGSC1.1 Triticum turgidum Svevo v1.0 Tropheryma whipplei TW08/27
(tropWhip_TW08_27) Tropheryma whipplei str. Twist (95) Trypanosoma brucei 427
Lister strain genome build 37 Turkey Dec. 2009 (TGC Turkey_2.01/melGal1)
(melGal1) Turkey Nov. 2014 (Turkey_5.0/melGal5) (melGal5) Upper Galilee
mountains blind mole rat Jun 2014 (S.galili_v1.0/nanGal1) (nanGal1) Ureaplasma
parvum serovar 3 str. ATCC 27815 (19087) Ureaplasma parvum serovar 3 str. ATCC
700970 (ureaUrea) Utricularia gibba CoGe v4 Verminephrobacter eiseniae EF01-2
(vermEise_EF01_2) Vibrio cholerae O1 biovar eltor str. N16961 (vibrChol1) Vibrio
cholerae O395 (vibrChol_O395_1) Vibrio fischeri ES114 (vibrFisc_ES114_1) Vibrio
harveyi ATCC BAA-1116 (19857) Vibrio parahaemolyticus RIMD 2210633 (vibrPara1)
Vibrio vulnificus CMCP6 (vibrVuln_CMCP6_1) Vibrio vulnificus YJ016
(vibrVuln_YJ016_1) Vigna radiata var. radiata LIS v6 Vitis vinifera JGI
12xMarch2010 Vitis vinifera genescope v1 Wallaby Nov. 2007 (Baylor 1.0/macEug1)
(macEug1) Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) (macEug2) Water buffalo Sep.
2013 (UMD_CASPUR_WB_2.0/bubBub1) (bubBub1) Weddell seal Mar 2013
(LepWed1.0/lepWed1) (lepWed1) West African lungfish Jul 2021 (Protopterus
annectens, PAN1.0) (GCF_019279795.1) White rhinoceros May 2012
(CerSimSim1.0/cerSim1) (cerSim1) White throated tinamou Aug 2014
(ASM70537v2/tinGut2) (tinGut2) White throated tinamou Jun 2014
(ASM70537v1/tinGut1) (tinGut1) White-tailed deer Apr 2017 (Odocoileus
virginianus) (GCF_002102435.1, Ovir.te_1.0) White-tailed eagle May 2014
(ASM69140v1/halAlb1) (halAlb1) White-tailed tropicbird May 2014
(ASM68728v1/phaLep1) (phaLep1) White-throated sparrow Apr 2013
(ASM38545v1/zonAlb1) (zonAlb1) Wigglesworthia glossinidia endosymbiont of
Glossina brevipalpis (wiggBrev) Wild yak Oct 2011 (BosGru_v2.0/bosMut1)
(bosMut1) Wolbachia endosymbiont of Drosophila melanogaster
(wolbEndo_OF_DROSOPHIL) Wolbachia endosymbiont strain TRS of Brugia malayi
(12475) Wolinella succinogenes DSM 1740 (woliSucc) X. tropicalis Aug. 2005 (JGI
4.1/xenTro2) (xenTro2) X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)
(xenTro9) X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) (xenTro3) X. tropicalis Nov.
2019 (UCB_Xtro_10.0/xenTro10) (xenTro10) X. tropicalis Oct. 2004 (JGI
3.0/xenTro1) (xenTro1) X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) (xenTro7)
Xanthobacter autotrophicus Py2 (15756) Xanthomonas axonopodis pv. citri str. 306
(297) Xanthomonas campestris pv. campestris str. 8004 (15) Xanthomonas
campestris pv. campestris str. ATCC 33913 (xantCamp) Xanthomonas campestris pv.
vesicatoria str. 85-10 (13649) Xanthomonas oryzae pv. oryzae KACC10331 (12931)
Xanthomonas oryzae pv. oryzae MAFF 311018 (16297) Xanthomonas oryzae pv. oryzae
PXO99A (Xanthomonas_oryzae_PXO99A) Xenopus tropicalis (xenTro9.1) Xylella
fastidiosa 9a5c (xyleFast) Xylella fastidiosa M12 (17823) Xylella fastidiosa
Temecula1 (285) Yangtze river dolphin 31 Jul 2013
(Lipotes_vexillifer_v1/lipVex1) (lipVex1) Yellow-throated sandgrouse Jun 2014
(ASM69924v1/pteGut1) (pteGut1) Yellowbelly pufferfish May 2013 (version 1 of
Takifugu flavidus genome/takFla1) (takFla1) Yersinia enterocolitica subsp.
enterocolitica 8081 (190) Yersinia pestis Angola (16067) Yersinia pestis Antiqua
(16645) Yersinia pestis CO92 (yersPest_CO92) Yersinia pestis KIM (288) Yersinia
pestis Nepal516 (16646) Yersinia pestis Pestoides F (16700) Yersinia pestis
biovar Microtus str. 91001 (10638) Yersinia pseudotuberculosis IP 31758 (16070)
Yersinia pseudotuberculosis IP 32953 (12950) Yersinia pseudotuberculosis YPIII
(28743) Zaire ebolavirus Aug. 2014 (NC_002549.1/zaiEbo1) (zaiEbo1) Zea mays B73
AGP v4.0 Zea mays PH207 v1.0 Zebra Mbuna Mar 2012 (MetZeb1.1/mayZeb1) (mayZeb1)
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) (taeGut2) Zebra finch Jul. 2008
(WUGSC 3.2.4/taeGut1) (taeGut1) Zebrafish (GRCz11/danRer11) without alt contigs
Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6) Zebrafish Jul. 2010 (Zv9/danRer7)
(danRer7) Zebrafish July 2007 (Zv7/danRer5) (danRer5) Zebrafish Mar. 2006
(Zv6/danRer4) (danRer4) Zebrafish May 2005 (Zv5/danRer3) (danRer3) Zebrafish May
2017 (GRCz11/danRer11) (danRer11) Zebrafish Sep. 2014 (GRCz10/danRer10)
(danRer10) Zostera marina JGI v2.2 Zoysia japonica ssp. nagirizaki Zoysia Genome
Database v1.1 Zymomonas mobilis subsp. mobilis ZM4 (zymoMobi_ZM4) canFam3
chimp/human Jun. 2008 (UCSC Recon/homPan20) (homPan20) hg19Haplotypes Feb. 2009
(GRCh37/hg19Haps) (hg19Haps) mm9 with ERCC spike-in orang/human Jun. 2008 (UCSC
Recon/homIni20) (homIni20) pUC18 Plasmid (pUC18) phiX174 (phiX) tarInv Dec. 2013
(GRCh38Tar/tarIhg38) (tarIhg38) uncultured methanogenic archaeon RC-I
(uncuMeth_RCI)
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Selectaffybatchanalyze75esetfpedfpheideaspreimzmlisa-jsonisa-tabldindeplpedludwig_modelmalistneostore.zipobfspbedppherdata.seshpsnpsiftdbnsfpspalndbaspalndbnpsplibvelvetwiffwiff2
Genome/Build:
unspecified (?)

unspecified (?) A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) A. gambiae
Oct. 2006 (AgamP3/anoGam3) (anoGam3) A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4)
(apiMel4) A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) A. mellifera
July 2004 (Baylor 1.2/apiMel1) (apiMel1) ARS1 Aug. 2016 Capra hircus (goat) (San
Clemente 2016 USDA) (GCF_001704415.2) Aardvark May 2012 (OryAfe1.0/oryAfe1)
(oryAfe1) Acaryochloris marina MBIC11017 (12997) Acholeplasma laidlawii PG-8A
(19259) Acidiphilium cryptum JF-5 (acidCryp_JF_5) Acidobacteria bacterium
Ellin345 (acidBact_ELLIN345) Acidothermus cellulolyticus 11B (acidCell_11B)
Acidovorax avenae subsp. citrulli AAC00-1 (15708) Acidovorax sp. JS42 (acidJS42)
Acinetobacter baumannii (13001) Acinetobacter baumannii (28921) Acinetobacter
baumannii ATCC 17978 (17477) Acinetobacter baumannii Oct. 2012
(aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) Acinetobacter sp. ADP1 (acinSp_ADP1)
Actinidia chinensis FEI Lab v1.0 Actinobacillus pleuropneumoniae L20
(actiPleu_L20) Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135)
Actinobacillus succinogenes 130Z (13370) Adelie penguin Jun 2014
(ASM69910v1/pygAde1) (pygAde1) Aeromonas hydrophila subsp. hydrophila ATCC 7966
(aeroHydr_ATCC7966) Aeromonas salmonicida subsp. salmonicida A449 (16723)
Aeropyrum pernix K1 (aerPer1) African Clawed Frog (xenLae9.2) African clawed
frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) Afrotheria Apr. 24. 2006
(UCSC Recon/afrOth13) (afrOth13) Agrobacterium tumefaciens str. C58 (283)
Alcanivorax borkumensis SK2 (alcaBork_SK2) Alkalilimnicola ehrlichei MLHE-1
(alkaEhrl_MLHE_1) Alkaliphilus metalliredigens QYMF (13006) Alkaliphilus
oremlandii OhILAs (16083) Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) Alpaca Mar.
2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) Amazon molly 28 Oct-2013
(Poecilia_formosa-5.1.2/poeFor1) (poeFor1) Amborella trichopoda Amborella V1.0
Amborella trichopoda JGI v1.0 American alligator Aug. 2012 (allMis0.2/allMis1)
(allMis1) American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0)
(allMis0) American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) American
flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) Amur tiger 06 Sep 2013
(PanTig1.0/panTig1) (panTig1) Anabaena variabilis ATCC 29413
(anabVari_ATCC29413) Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C)
Anaeromyxobacter sp. Fw109-5 (17729) Ananas comosus JGI v3.0 Anaplasma marginale
str. St. Maries (anapMarg_ST_MARIES) Anaplasma phagocytophilum HZ (336) Anna's
hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) Apostasia shenzhenica v1.0
Aquifex aeolicus VF5 (aquiAeol) Arabidopsis lyrata (Araly1) Arabidopsis lyrata
JGI v1.0 Arabidopsis lyrata JGI v2.1 Arabidopsis thaliana Arabidopsis thaliana
COL-0 Araport11 Arabidopsis thaliana COL-0 TAIR10 Arabidopsis thaliana TAIR10
(Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) Arabidopsis thaliana
TAIR7 (araTha1) Arabidopsis thaliana TAIR8 (arabidopsis_tair8) Arabidopsis
thaliana TAIR9 (arabidopsis) Arachis ipaensis Peanut Base v1.0 Archaeoglobus
fulgidus DSM 4304 (archFulg1) Arcobacter butzleri RM4018 (16319) Arctic lamprey
Sep 2013 (LetJap1.0/letCam1) (letCam1) Armadillo Dec. 2011 (Baylor/dasNov3)
(dasNov3) Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) Armadillo May 2005
(Broad/dasNov1) (dasNov1) Arthrobacter aurescens TC1 (12512) Arthrobacter sp.
FB24 (arthFB24) Asparagus officinalis v1.1 Aster yellows witches'-broom
phytoplasma AYWB (13478) Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1)
(gadMor1) Azoarcus sp. BH72 (13217) Azoarcus sp. EbN1 (azoaSp_EBN1) Azorhizobium
caulinodans ORS 571 (azorCaul2) B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1)
Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) Baboon Mar. 2012 (Baylor
Panu_2.0/papAnu2) (papAnu2) Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1)
Bacillus amyloliquefaciens FZB42 (13403) Bacillus anthracis str. 'Ames Ancestor'
(10784) Bacillus anthracis str. Ames (baciAnth_AMES) Bacillus anthracis str.
Sterne (10878) Bacillus cereus ATCC 10987 (74) Bacillus cereus ATCC 14579 (384)
Bacillus cereus E33L (12468) Bacillus cereus subsp. cytotoxis NVH 391-98 (13624)
Bacillus clausii KSM-K16 (13291) Bacillus halodurans C-125 (baciHalo) Bacillus
licheniformis ATCC 14580 (12388) Bacillus licheniformis ATCC 14580 (13082)
Bacillus pumilus SAFR-032 (20391) Bacillus subtilis subsp. subtilis str. 168
(baciSubt) Bacillus thuringiensis serovar konkukian str. 97-27 (10877) Bacillus
thuringiensis str. Al Hakam (18255) Bacillus weihenstephanensis KBAB4 (13623)
Bacteroides fragilis NCTC 9343 (46) Bacteroides fragilis YCH46 (13067)
Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) Bacteroides vulgatus
ATCC 8482 (13378) Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) Bald eagle Aug
2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) Bar tailed trogon 16 Jun
2014 (ASM70340v1/apaVit1) (apaVit1) Barn owl May 2014 (ASM68720v1/tytAlb1)
(tytAlb1) Bartonella bacilliformis KC583 (16249) Bartonella henselae str.
Houston-1 (bartHens_HOUSTON_1) Bartonella quintana str. Toulouse (44) Bartonella
tribocorum CIP 105476 (28109) Baumannia cicadellinicola str. Hc (Homalodisca
coagulata) (baumCica_HOMALODISCA) Bdellovibrio bacteriovorus HD100 (bdelBact)
Beta vulgaris RefBeet 1.1 Beta vulgaris RefBeet v1.2 Bicolor damselfish May 2014
(Stegastes_partitus-1.0.2/stePar1) (stePar1) Bifidobacterium adolescentis ATCC
15703 (16321) Bifidobacterium longum NCC2705 (bifiLong) Big brown bat Jul 2012
(EptFus1.0/eptFus1) (eptFus1) Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1)
Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) Black rockcod Jul 2014
(NC01/notCor1) (notCor1) Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2)
Bonobo May 2012 (Max-Planck/panPan1) (panPan1) Bonobo May 2020
(Mhudiblu_PPA_v0/panPan3) (panPan3) Bordetella bronchiseptica RB50 (bordBron)
Bordetella parapertussis 12822 (25) Bordetella pertussis Tohama I (26)
Bordetella petrii DSM 12804 (28135) Boreoeutherian Apr. 24. 2006 (UCSC
Recon/borEut13) (borEut13) Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12)
(canHg12) Borrelia afzelii PKo (17057) Borrelia burgdorferi B31 (borrBurg)
Borrelia garinii PBi (12554) Brachypodium distachyon JGI v3.1 Brachypodium
distachyon MIPS 1.2 Bradyrhizobium japonicum USDA 110 (bradJapo) Bradyrhizobium
sp. BTAi1 (16137) Bradyrhizobium sp. ORS278 (19575) Brandt's myotis (bat) 28 Jun
2013 (ASM41265v1/myoBra1) (myoBra1) Braney test Jul. 2013 (braNey1/braNey1)
(braNey1) Brassica oleracea Ensembl Genomes v2.1 Brassica rapa Annotation v1.2
on assembly v1.1 (Phytozome 9.1) Brassica rapa JGI FPsc1.3 Brown kiwi Jun. 2015
(MPI-EVA AptMant0/aptMan1) (aptMan1) Brown roatelo Jun 2014 (ASM69576v1/mesUni1)
(mesUni1) Brucella abortus biovar 1 str. 9-941 (9619) Brucella canis ATCC 23365
(20243) Brucella melitensis 16M (brucMeli) Brucella melitensis biovar Abortus
2308 (16203) Brucella ovis ATCC 25840 (12514) Brucella suis 1330 (320) Brucella
suis ATCC 23445 (20371) Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1)
Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) Buchnera aphidicola
str. Bp (Baizongia pistaciae) (256) Buchnera aphidicola str. Cc (Cinara cedri)
(16372) Buchnera aphidicola str. Sg (Schizaphis graminum) (312) Budgerigar Sep.
2011 (WUSTL v6.3/melUnd1) (melUnd1) Bundibugyo ebolavirus Aug. 2014
(NC_014373.1/bunEbo1) (bunEbo1) Burkholderia ambifaria AMMD (burkCepa_AMMD)
Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) Burkholderia cenocepacia
HI2424 (burkCeno_HI2424) Burkholderia cenocepacia MC0-3 (17929) Burkholderia
mallei ATCC 23344 (burkMall_ATCC23344) Burkholderia mallei NCTC 10229 (13943)
Burkholderia mallei NCTC 10247 (13946) Burkholderia mallei SAVP1 (13947)
Burkholderia multivorans ATCC 17616 (17407) Burkholderia pseudomallei 1106a
(burkPseu_1106A) Burkholderia pseudomallei 1710b (13954) Burkholderia
pseudomallei 668 (13953) Burkholderia pseudomallei K96243 (178) Burkholderia sp.
383 (burk383) Burkholderia thailandensis E264 (burkThai_E264) Burkholderia
vietnamiensis G4 (burkViet_G4) Burkholderia xenovorans LB400 (burkXeno_LB400)
Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1)
Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) Bushbaby Dec. 2006
(Broad/otoGar1) (otoGar1) Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) C.
angaria Oct. 2010 (WS225/caeAng1) (caeAng1) C. brenneri Feb. 2008 (WUGSC
6.0.1/caePb2) (caePb2) C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) C.
brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) C. briggsae Apr. 2011
(WS225/cb4) (cb4) C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) C. briggsae Jan.
2007 (WUGSC 1.0/cb3) (cb3) C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1)
C. elegans Aug. 2007 (WS180/ce5) (ce5) C. elegans Feb 2009 (WS200/ce7) (ce7) C.
elegans Feb. 2013 (WBcel235/ce11) (ce11) C. elegans Jan 2010 (WS210/ce9) (ce9)
C. elegans Jan. 2007 (WS170/ce4) (ce4) C. elegans Jun 2009 (WS204/ce8) (ce8) C.
elegans Mar. 2004 (WS120/ce2) (ce2) C. elegans March 2005 (WS140/ce3) (ce3) C.
elegans May 2008 (WS190/ce6) (ce6) C. elegans Oct. 2010 (WS220/ce10) (ce10) C.
intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) C. intestinalis Dec. 2002 (JGI
1.0/ci1) (ci1) C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) C. japonica Sep.
2010 (WUGSC 7.0.1/caeJap3) (caeJap3) C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4)
(caeJap4) C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) C. japonica Mar.
2008 (WUGSC 3.0.2/caeJap1) (caeJap1) C. remanei Jul. 2007 (WS220/caeRem4)
(caeRem4) C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) C. remanei March
2005 (WUGSC prelim/caeRem1) (caeRem1) C. remanei May 2007 (WUGSC 15.0.1/caeRem3)
(caeRem3) C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) C. savignyi July 2005
(Sidow Lab 2.0/cioSav2) (cioSav2) C. sp. 11 ju1373 Nov. 2010 (WUSTL
3.0.1/caeSp111) (caeSp111) C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71)
(caeSp71) C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) Cactus Nov.
2010 (CactusV3/cacTus3) (cacTus3) Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2)
Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) Cajanus cajan Penguin Genomics
v5.0 Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) Caldivirga
maquilingensis IC-167 (caldMaqu1) Campylobacter concisus 13826 (17159)
Campylobacter curvus 525.92 (17161) Campylobacter fetus subsp. fetus 82-40
(campFetu_82_40) Campylobacter hominis ATCC BAA-381 (20083) Campylobacter jejuni
RM1221 (campJeju_RM1221) Campylobacter jejuni subsp. doylei 269.97 (17163)
Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) Campylobacter jejuni
subsp. jejuni 81116 (17953) Campylobacter jejuni subsp. jejuni NCTC 11168
(campJeju) Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) Candidatus Blochmannia
floridanus (blocFlor) Candidatus Blochmannia pennsylvanicus str. BPEN (13875)
Candidatus Carsonella ruddii PV (candCars_RUDDII) Candidatus Desulforudis
audaxviator MP104C (21047) Candidatus Korarchaeum cryptofilum OPF8 (16525)
Candidatus Methanoregula boonei 6A8 (methBoon1) Candidatus Pelagibacter ubique
HTCC1062 (candPela_UBIQUE_HTCC1) Candidatus Protochlamydia amoebophila UWE25
(paraSp_UWE25) Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
(16841) Candidatus Sulcia muelleri GWSS (19617) Candidatus Vesicomyosocius
okutanii HA (18267) Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1)
Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) Capsella rubella JGI
annotation v1.0 on assembly v1 Capsella rubella JGI v1.0 Capsicum annuum Pepper
Genome v2.0 Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) Carica
papaya Hawaii Agriculture Research Center Carica papaya JGI ASGPB0.4 Cat Dec.
2008 (NHGRI/GTB V17e/felCat4) (felCat4) Cat Mar. 2006 (Broad/felCat3) (felCat3)
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) Cat Nov. 2017
(Felis_catus_9.0/felCat9) (felCat9) Cat Sep. 2011 (ICGSC Felis_catus
6.2/felCat5) (felCat5) Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1)
Caulobacter crescentus CB15 (caulCres) Caulobacter sp. K31 (16306) Cenchrus
americanus v1.0 CentromereY 2013 GrCh38 (centromeres1) Chenopodium quinoa JGI
v1.0 Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) Chicken Feb. 2004
(WUGSC 1.0/galGal2) (galGal2) Chicken Mar. 2018 (GRCg6a/galGal6) (galGal6)
Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) Chicken Nov. 2011 (ICGSC
Gallus_gallus-4.0/galGal4) (galGal4) Chicken Oct. 2021
(bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) Chimp Feb. 2011
(CSAC 2.1.4/panTro4) (panTro4) Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6)
Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) Chimp May 2016 (Pan_tro
3.0/panTro5) (panTro5) Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) Chimp Oct.
2010 (CGSC 2.1.3/panTro3) (panTro3) Chinchilla May 2012 (ChiLan1.0/chiLan1)
(chiLan1) Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) Chinese
hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) Chinese hamster
Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) Chinese hamster Jun. 2017
(CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) Chinese pangolin Aug 2014
(M_pentadactyla-1.1.1/manPen1) (manPen1) Chinese softshell turtle Oct 2011
(PelSin_1.0/pelSin1) (pelSin1) Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1)
(tupChi1) Chlamydia muridarum Nigg (229) Chlamydia trachomatis 434/Bu (28583)
Chlamydia trachomatis A/HAR-13 (13885) Chlamydia trachomatis D/UW-3/CX
(chlaTrac) Chlamydia trachomatis L2b/UCH-1/proctitis (28585) Chlamydomonas
reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6
Chlamydomonas reinhardtii JGI v5.5 Chlamydophila abortus S26/3 (355)
Chlamydophila caviae GPIC (228) Chlamydophila felis Fe/C-56 (370) Chlamydophila
pneumoniae AR39 (247) Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029)
Chlamydophila pneumoniae J138 (257) Chlamydophila pneumoniae TW-183 (420)
Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) Chlorobium phaeobacteroides DSM
266 (12609) Chlorobium tepidum TLS (chloTepi_TLS) Chloroflexus aurantiacus
J-10-fl (59) Chromobacterium violaceum ATCC 12472 (chroViol) Chromohalobacter
salexigens DSM 3043 (chroSale_DSM3043) Chuck-will's-widow Jun 2014
(ASM70074v1/capCar1) (capCar1) Cicer arietinum LIS v1.0 Citrobacter koseri ATCC
BAA-895 (12716) Citrullus lanatus Cucurbit Genomics Database Citrullus lanatus
Cucurbit Genomics Database v1.0 Citrus clementina JGI v1.0 Citrus sinensis JGI
v1 assembly and v1.0 annotation Clavibacter michiganensis subsp. michiganensis
NCPPB 382 (clavMich_NCPPB_382) Clavibacter michiganensis subsp. sepedonicus
(184) Clostridium acetobutylicum ATCC 824 (77) Clostridium beijerinckii NCIMB
8052 (12637) Clostridium botulinum A str. ATCC 19397 (19517) Clostridium
botulinum A str. ATCC 3502 (193) Clostridium botulinum A str. Hall (19521)
Clostridium botulinum A3 str. Loch Maree (28507) Clostridium botulinum B1 str.
Okra (28505) Clostridium botulinum F str. Langeland (19519) Clostridium
difficile 630 (78) Clostridium kluyveri DSM 555 (19065) Clostridium novyi NT
(16820) Clostridium perfringens ATCC 13124 (304) Clostridium perfringens SM101
(12521) Clostridium perfringens str. 13 (79) Clostridium phytofermentans ISDg
(16184) Clostridium tetani E88 (81) Clostridium thermocellum ATCC 27405 (314)
Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) Coffea canephora Coffee Genome
Hub v1 Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) Colwellia
psychrerythraea 34H (colwPsyc_34H) Common cuckoo Jun 2014 (ASM70932v1/cucCan1)
(cucCan1) Corchorus olitorius GenBank v1.0 Corynebacterium diphtheriae NCTC
13129 (87) Corynebacterium efficiens YS-314 (coryEffi_YS_314) Corynebacterium
glutamicum ATCC 13032 (13760) Corynebacterium glutamicum ATCC 13032 (307)
Corynebacterium glutamicum R (19193) Corynebacterium jeikeium K411 (13967) Cow
Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) Cow Apr. 2018 (ARS-UCD1.2/bosTau9)
(bosTau9) Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) Cow Aug. 2009 (UMD3.1)
(bosTauMd3) Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) (bosTau8) Cow Mar. 2005
(Baylor 2.0/bosTau2) (bosTau2) Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6)
(bosTau6) Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) Cow Oct. 2011 (Baylor
Btau_4.6.1/bosTau7) (bosTau7) Coxiella burnetii Dugway 5J108-111 (16721)
Coxiella burnetii RSA 331 (16791) Coxiella burnetii RSA 493 (coxiBurn)
Crab-eating macaque Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (macFas5)
Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) Crowned crain Jun 2014
(ASM70989v1/balPav1) (balPav1) Cuckoo roller May 2014 (ASM69178v1/lepDis1)
(lepDis1) Cucumis melo Melonomics v3.5 Cucumis sativus L. JGI v1.0 Cytophaga
hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) D. albomicans 21 May 2012
(DroAlb_1.0/droAlb1) (droAlb1) D. ananassae Aug. 2005 (Agencourt prelim/droAna2)
(droAna2) D. ananassae Feb. 2006 (droAna3) D. ananassae July 2004 (TIGR/droAna1)
(droAna1) D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) D. bipectinata
04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) D. elegans 04 Mar 2013
(Dele_2.0/droEle2) (droEle2) D. erecta Aug. 2005 (Agencourt prelim/droEre1)
(droEre1) D. erecta Feb. 2006 (droEre2) D. eugracilis 04 Mar 2013
(Deug_2.0/droEug2) (droEug2) D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2)
(droFic2) D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) D.
grimshawi Feb. 2006 (droGri2) D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2)
(droKik2) D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) D. melanogaster Apr.
2006 (BDGP R5/dm3) (dm3) D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1
MT/dm6) (dm6) D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) D. miranda 19 Apr
2013 (DroMir_2.2/droMir2) (droMir2) D. mojavensis Aug. 2004 (Agencourt
prelim/droMoj1) (droMoj1) D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2)
(droMoj2) D. mojavensis Feb. 2006 (droMoj3) D. persimilis Oct. 2005
(Broad/droPer1) (droPer1) D. pseudoobscura (dp4) (dp4) D. pseudoobscura 11 Apr
2013 (Dpse_3.0/droPse3) (droPse3) D. pseudoobscura Aug. 2003 (Baylor
freeze1/dp2) (dp2) D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) D.
rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) D. sechellia Oct. 2005
(Broad/droSec1) (droSec1) D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1)
(droSim1) D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) D. takahashii
04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) D. virilis Aug. 2005 (Agencourt
prelim/droVir2) (droVir2) D. virilis Feb. 2006 (droVir3) D. virilis July 2004
(Agencourt prelim/droVir1) (droVir1) D. willistoni 03 Aug 2006
(dwil_caf1/droWil2) (droWil2) D. willistoni Feb. 2006 (droWil1) D. yakuba 27 Jun
2006 (dyak_caf1/droYak3) (droYak3) D. yakuba Apr. 2004 (WUGSC 1.0/droYak1)
(droYak1) D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) Dalmatian pelican
May 2014 (ASM68737v1/pelCri1) (pelCri1) Daucus carota JGI v2.0 David's myotis
(bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) Dechloromonas aromatica RCB
(dechArom_RCB) Deer Tick (Ixodes scapularis) (IscaW1) Dehalococcoides
ethenogenes 195 (dehaEthe_195) Dehalococcoides sp. BAV1 (15770) Dehalococcoides
sp. CBDB1 (15604) Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300)
Deinococcus radiodurans R1 (deinRadi) Delftia acidovorans SPH-1 (17413)
Desulfitobacterium hafniense Y51 (desuHafn_Y51) Desulfococcus oleovorans Hxd3
(18007) Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) Desulfotomaculum
reducens MI-1 (desuRedu_MI_1) Desulfovibrio desulfuricans G20 (329)
Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) Desulfovibrio vulgaris subsp.
vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) Dichelobacter nodosus
VCS1703A (dichNodo_VCS1703A) Dinoroseobacter shibae DFL 12 (17417) Dog July 2004
(Broad/canFam1) (canFam1) Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) Dog
May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) Dog May 2005
(Broad/canFam2) (canFam2) Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) Dog
Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) Dolphin Feb. 2008
(Broad/turTru1) (turTru1) Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2)
Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) Downy woodpecker Jun 2014
(ASM69900v1/picPub1) (picPub1) Ebola virus 49 sequences: 5 Ebola, 2 Marburg
strains (eboVir2) Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1)
Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) Ecoref Feb.
2013 (ecoRef3/ecoRef3) (ecoRef3) Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4)
Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) Ecoref Jan. 2013 (ecoRef2/ecoRef2)
(ecoRef2) Ehrlichia canis str. Jake (10694) Ehrlichia chaffeensis str. Arkansas
(325) Ehrlichia ruminantium str. Gardel (13356) Ehrlichia ruminantium str.
Welgevonden (13355) Ehrlichia ruminantium str. Welgevonden
(ehrlRumi_WELGEVONDEN) Elaeis guineensis EG5.1 Elaeis guineensis NCBI Genome
v1.0 Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) Elephant Jul. 2009
(Broad/loxAfr3) (loxAfr3) Elephant May 2005 (Broad/loxAfr1) (loxAfr1) Elephant
shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) Emperor penguin 06
Jun 2014 (ASM69914v1/aptFor1) (aptFor1) Enterobacter sakazakii ATCC BAA-894
(12720) Enterobacter sp. 638 (ente638) Enterococcus faecalis V583
(enteFaec_V583) Erythranthe guttata JGI v2.0 Erythrobacter litoralis HTCC2594
(erytLito_HTCC2594) Escherichia coli 536 (16235) Escherichia coli APEC O1
(eschColi_APEC_O1) Escherichia coli C str. ATCC 8739 (18083) Escherichia coli
CFT073 (eschColi_CFT073) Escherichia coli DH10B (20079) Escherichia coli E24377A
(13960) Escherichia coli EC4115 (eschColi_EC4115) Escherichia coli HS (13959)
Escherichia coli K12 (eschColi_K12) Escherichia coli O157:H7 EDL933 (259)
Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) Escherichia coli SECEC
SMS-3-5 (19469) Escherichia coli TW14359 (eschColi_TW14359) Escherichia coli
UTI89 (16259) Escherichia coli W3110 (16351) Euarchontoglires Apr. 24. 2006
(UCSC Recon/euaGli13) (euaGli13) Eucalyptus grandis JGI assembly v1.0,
annotation v1.1 Eucalyptus grandis JGI v2.0 European sea bass Apr 2014
(seabass_V1.0/dicLab1) (dicLab1) Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13)
(eutHer13) Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) Ferret Apr. 2011
(MusPutFur1.0/musFur1) (musFur1) Fervidobacterium nodosum Rt17-B1 (16719)
Finegoldia magna ATCC 29328 (18981) Fission Yeast (S. pombe)
(Schizosaccharomyces_pombe_1.1) Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1)
(sebRub1) Flavobacterium johnsoniae UW101 (flavJohn_UW101) Flavobacterium
psychrophilum JIP02/86 (19979) Foshan strain genomic contigs sequences, AaloF1
assembly. Fragaria vesca JGI v1.1 Fragaria vesca Strawberry Genome 1.0
Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) Francisella
tularensis subsp. holarctica (16421) Francisella tularensis subsp. holarctica
FTA (20197) Francisella tularensis subsp. holarctica OSU18 (17265) Francisella
tularensis subsp. novicida U112 (16088) Francisella tularensis subsp. tularensis
FSC198 (17375) Francisella tularensis subsp. tularensis SCHU S4
(franTula_TULARENSIS) Francisella tularensis subsp. tularensis WY96-3418 (18459)
Frankia alni ACN14a (17403) Frankia sp. CcI3 (franCcI3) Frankia sp. EAN1pec
(13915) Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) Fugu Oct. 2004 (JGI 4.0/fr2) (fr2)
Fugu Oct. 2011 (FUGU5/fr3) (fr3) Fusobacterium nucleatum subsp. nucleatum ATCC
25586 (fusoNucl) GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2)
GRCh38.p2 Dec 2014 (hg38Patch2) Garter snake Jun. 2015
(Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) Geobacillus kaustophilus HTA426
(geobKaus_HTA426) Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2)
Geobacter metallireducens GS-15 (geobMeta_GS15) Geobacter sulfurreducens PCA
(geobSulf) Geobacter uraniireducens Rf4 (geobUran_RF4) Gharial APR 2009
(preliminary/gavGan0) (gavGan0) Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1)
(nomLeu1) Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) Gibbon Oct. 2012
(GGSC Nleu3.0/nomLeu3) (nomLeu3) Glires Apr. 24. 2006 (UCSC Recon/gliRes13)
(gliRes13) Gloeobacter violaceus PCC 7421 (gloeViol) Gluconacetobacter
diazotrophicus PAl 5 (377) Gluconobacter oxydans 621H (glucOxyd_621H) Glycine
max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly Glycine max
JGI Wm82.a2.v1 Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1)
Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) Golden hamster Mar 2013
(MesAur1.0/mesAur1) (mesAur1) Golden snub-nosed monkey Oct. 2014
(Rrox_v1/rhiRox1) (rhiRox1) Golden-collared manakin May 2014
(ASM69201v1/manVit1) (manVit1) Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2)
Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) Gorilla Dec 2014
(gorGor4.1/gorGor4) (gorGor4) Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5)
Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) Gorilla Oct. 2008 (Sanger
0.1/gorGor1) (gorGor1) Gossypium raimondii JGI annotation v2.1 on assembly v2.0
Gossypium raimondii JGI v2.1 Gramella forsetii KT0803 (gramFors_KT0803)
Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) Grch37.p10 Sep. 2012
(GRCh37.p10/hg19Patch10) (hg19Patch10) Grch37.p5 Jun. 2011
(GRCh37.p5/hg19Patch5) (hg19Patch5) Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9)
(hg19Patch9) Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) Great
cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) Greater horseshoe bat Sep.
2013 (ASM46549v1/rhiFer1) (rhiFer1) Green monkey 25 Mar-2014 (Chlorocebus_sabeus
1.1/chlSab2) (chlSab2) Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1)
Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) Guppy Apr. 2014
(Guppy_female_1.0/poeRet1) (poeRet1) H. contortus Dec. 2009 (WormBase
WS210/haeCon1) (haeCon1) Haemophilus ducreyi 35000HP (38) Haemophilus influenzae
86-028NP (11752) Haemophilus influenzae PittEE (16400) Haemophilus influenzae
PittGG (16401) Haemophilus influenzae Rd KW20 (haemInfl_KW20) Haemophilus somnus
129PT (haemSomn_129PT) Haemophilus somnus 2336 (388) Hahella chejuensis KCTC
2396 (haheChej_KCTC_2396) Haloarcula marismortui ATCC 43049 (halMar1)
Halobacterium salinarum R1 (106) Halobacterium sp. NRC-1 (haloHalo1)
Haloquadratum walsbyi DSM 16790 (haloWals1) Halorhodospira halophila SL1
(haloHalo_SL1) Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) Head
Louse (Pediculus humanus) (PhumU1) Hedgehog June 2006 (Broad/eriEur1) (eriEur1)
Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) Helicobacter acinonychis str.
Sheeba (heliAcin_SHEEBA) Helicobacter hepaticus ATCC 51449 (heliHepa)
Helicobacter pylori 26695 (heliPylo_26695) Helicobacter pylori HPAG1
(heliPylo_HPAG1) Helicobacter pylori J99 (heliPylo_J99) Heliobacterium
modesticaldum Ice1 (13427) Herminiimonas arsenicoxydans (hermArse) Herpetosiphon
aurantiacus ATCC 23779 (16523) Hevea brasiliensis NCBI Genomes v1 Hg19 lgg
inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) Hlaref Apr. 2012
(hlaRefV1/hlaRef1) (hlaRef1) Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2)
Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) Hoatzin May 2014
(ASM69207v1/opiHoa1) (opiHoa1) Hominidae Apr. 24. 2006 (UCSC Recon/homIni13)
(homIni13) Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) Homo Sapiens
(GRCh38) Transcriptome + ERCC Homo sapiens (hg19 with mtDNA replaced with rCRS)
(Homo_sapiens_nuHg19_mtrCRS) Homo sapiens b37 (hg_g1k_v37) Homo sapiens
hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) Honeybee (Apis
mellifera): apiMel3 (apiMel3) Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1)
(corCor1) Hordeum vulgare Ensembl Genomes ASM32608v1 Hordeum vulgare IBC PGSB v2
Hordeum vulgare MIPS Horse Jan. 2007 (Broad/equCab1) (equCab1) Horse Jan. 2018
(EquCab3.0/equCab3) (equCab3) Horse Sep. 2007 (Broad/equCab2) (equCab2) Houbara
bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) Human Apr. 2003 (NCBI33/hg15)
(hg15) Human CHM13 2.0 (T2T Consortium) Jan. 2022 Human Dec. 2013 (GRCh38/hg38)
(hg38) Human Feb. 2009 (GRCh37/hg19) (hg19) Human Jan. 2021 isolate CHM13 (T2T
Consortium) female Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) Human July 2003
(NCBI34/hg16) (hg16) Human Mar. 2006 (NCBI36/hg18) (hg18) Human May 2004
(NCBI35/hg17) (hg17) Human herpesvirus 1 (15217) Human repeats Nov. 2012
(1/repeats2) (repeats2) Hydra magnipapillata str. 105 (Hydra_JCVI) Hyperthermus
butylicus DSM 5456 (hypeButy1) Hyphomonas neptunium ATCC 15444
(hyphNept_ATCC15444) Idiomarina loihiensis L2TR (idioLoih_L2TR) Ignicoccus
hospitalis KIN4/I (13914) Indian false vampire Sep. 2013 (ASM46534v1/megLyr1)
(megLyr1) Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) J. Craig Venter
Sep. 2007 (HuRef/venter1) (venter1) Jannaschia sp. CCS1 (jannCCS1)
Janthinobacterium sp. Marseille (16549) Japanese eel 18 Mar-2014
(japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1)
(angJap1) Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) Kangaroo rat
Jul. 2008 (Broad/dipOrd1) (dipOrd1) Killdeer Aug 2014 (ASM70802v2/chaVoc2)
(chaVoc2) Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) Killer whale Jan 2013
(Oorc_1.1/orcOrc1) (orcOrc1) Kineococcus radiotolerans SRS30216 (10689) Kirref
Apr. 2011 (kirRef/kirRef) (kirRef) Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2)
(kirRefV2) Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) Kirrefv4 Apr. 2011
(kirRefV4/kirRefV4) (kirRefV4) Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) Korean Man
(Homo_sapiens_AK1) Lactobacillus acidophilus NCFM (82) Lactobacillus brevis ATCC
367 (404) Lactobacillus casei ATCC 334 (402) Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842 (16871) Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365 (403) Lactobacillus gasseri ATCC 33323 (84) Lactobacillus helveticus DPC
4571 (17811) Lactobacillus johnsonii NCC 533 (9638) Lactobacillus plantarum
WCFS1 (lactPlan) Lactobacillus reuteri F275 (15766) Lactobacillus sakei subsp.
sakei 23K (13435) Lactobacillus salivarius UCC118 (lactSali_UCC118) Lactococcus
lactis subsp. cremoris MG1363 (18797) Lactococcus lactis subsp. cremoris SK11
(401) Lactococcus lactis subsp. lactis Il1403 (lactLact) Lamprey Dec. 2017
(Pmar_germline 1.0/petMar3) (petMar3) Lamprey Mar. 2007 (WUGSC 3.0/petMar1)
(petMar1) Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) Lancelet Apr. 2008
(JGI v2.0/braFlo2) (braFlo2) Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1)
Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) Lawsonia
intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) Legionella pneumophila str.
Corby (17491) Legionella pneumophila str. Lens (13126) Legionella pneumophila
str. Paris (13127) Legionella pneumophila subsp. pneumophila str. Philadelphia 1
(legiPneu_PHILADELPHIA) Leifsonia xyli subsp. xyli str. CTCB07
(leifXyli_XYLI_CTCB0) Leishmania major 2005 (lMaj5) Leptospira borgpetersenii
serovar Hardjo-bovis JB197 (16148) Leptospira borgpetersenii serovar
Hardjo-bovis L550 (16146) Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130 (10687) Leptospira interrogans serovar Lai str. 56601 (leptInte)
Leptothrix cholodnii SP-6 (20039) Lesser Egyptian jerboa May 2012
(JacJac1.0/jacJac1) (jacJac1) Leuconostoc citreum KM20 (16062) Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) Limpet Jul.
2013 (lotGig0/lotGig0) (lotGig0) Listeria innocua Clip11262 (listInno) Listeria
monocytogenes EGD-e (276) Listeria monocytogenes str. 4b F2365 (85) Listeria
welshimeri serovar 6b str. SLCC5334 (13443) Little egret May 2014
(ASM68718v1/egrGar1) (egrGar1) Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) Lizard
May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) Lotus japonicus Kazusa 2.5
Lysinibacillus sphaericus C3-41 (19619) M. domestica 22 Apr 2013
(Musca_domestica-2.0.2/musDom2) (musDom2) M. hapla Sep. 2008 (M. hapla VW9
WS210/melHap1) (melHap1) M. incognita Feb. 2008 (M. incognita WS210/melInc1)
(melInc1) MMTV Nov. 2009 (MMTV/mmtv) (mmtv) Magnetococcus sp. MC-1 (magnMC1)
Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) Maize (Zea mays)
(Zea_mays_B73_RefGen_v2) Malayan flying lemur Jun. 2014
(G_variegatus-3.0.2/galVar1) (galVar1) Mallard duck Apr 2013
(BGI_duck_1.0/anaPla1) (anaPla1) Malus domestica IASMA Malus domestica Penguin
Genomics v2 Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) Manihot esculenta
Cassava4 Manihot esculenta JGI v6.1 Mannheimia succiniciproducens MBEL55E
(mannSucc_MBEL55E) Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1)
Marchantia polymorpha JGI v3.1 Maricaulis maris MCS10 (mariMari_MCS10)
Marinobacter aquaeolei VT8 (mariAqua_VT8) Marinomonas sp. MWYL1 (17445) Marmoset
June 2007 (WUGSC 2.0.2/calJac1) (calJac1) Marmoset March 2009 (WUGSC
3.2/calJac3) (calJac3) Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)
(calJac4) Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) Medaka Oct. 2005
(NIG/UT MEDAKA1/oryLat2) (oryLat2) Medicago truncatula JCVI 4.0 Medicago
truncatula JGI Mt4.0v1 Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1)
(geoFor1) Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) Mesoplasma florum L1
(mesoFlor_L1) Mesorhizobium loti MAFF303099 (mesoLoti) Mesorhizobium sp. BNC1
(10690) Metallosphaera sedula DSM 5348 (metaSedu) Methanobrevibacter smithii
ATCC 35061 (methSmit1) Methanocaldococcus jannaschii DSM 2661 (methJann1)
Methanococcoides burtonii DSM 6242 (methBurt2) Methanococcus aeolicus Nankai-3
(methAeol1) Methanococcus maripaludis C5 (methMari_C5_1) Methanococcus
maripaludis C6 (19639) Methanococcus maripaludis C7 (methMari_C7) Methanococcus
maripaludis S2 (metMar1) Methanococcus vannielii SB (methVann1)
Methanocorpusculum labreanum Z (methLabrZ_1) Methanoculleus marisnigri JR1
(mculMari1) Methanopyrus kandleri AV19 (methKand1) Methanosaeta thermophila PT
(methTherPT1) Methanosarcina acetivorans C2A (metAce1) Methanosarcina barkeri
str. Fusaro (methBark1) Methanosarcina mazei Go1 (methMaze1) Methanosphaera
stadtmanae DSM 3091 (methStad1) Methanospirillum hungatei JF-1 (methHung1)
Methanothermobacter thermautotrophicus str. Delta H (methTher1) Methylibium
petroleiphilum PM1 (methPetr_PM1) Methylobacillus flagellatus KT (methFlag_KT)
Methylobacterium extorquens PA1 (18637) Methylobacterium radiotolerans JCM 2831
(18817) Methylobacterium sp. 4-46 (18809) Methylococcus capsulatus str. Bath
(methCaps_BATH) Mexican tetra (cavefish) Apr 2013
(Astyanax_mexicanus-1.0.2/astMex1) (astMex1) Mhcref Apr. 2011
(mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) Mhcref Jan. 2011 (mhcRefV1/mhcRef)
(mhcRef) Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) Mhcref
July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) Mhcref July 2011
(mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) Mhcref July 2011
(mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) Mhcref July 2011
(mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) Mhcref July 2011
(mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) Mhcref July 2011
(mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) Mhcref July 2011
(mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) Mhcref July 2011
(mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) Mhcref July 2011
(mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) Mhcref July 2011
(mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) Mhcref June 2011
(mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) Mhcref June 2011
(mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) Mhcref June 2011
(mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) Mhcref Mar. 2012
(mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) Mhcref Mar. 2012
(mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) Mhcref Mar. 2012
(mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) Mhcref Oct. 2011
(mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) Mhcref Oct. 2011
(mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) Mhcref Oct. 2011
(mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) Mhcref Oct. 2011
(mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) Microbat Jul. 2010 (Broad Institute
Myoluc2.0/myoLuc2) (myoLuc2) Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1)
Microcystis aeruginosa NIES-843 (27835) Micromonas commoda JGI v3.0 Minke whale
Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) Mm10haps Dec. 2011 (Mouse
strains/mm10Strains1) (mm10Strains1) Monkeypox virus MPXV-M5312_HM12_Rivers
(MT903340.1/GCF_014621545.1) (mpxvRivers) Moorella thermoacetica ATCC 39073
(moorTher_ATCC39073) Mosquito (Aedes aegypti) (AaegL1) Mosquito (Anopheles
gambiae) (AgamP3) Mosquito (Culex quinquefasciatus) (CpipJ1) Mouse (Mus
Musculus): mm10 Full Mouse Aug. 2005 (NCBI35/mm7) (mm7) Mouse Feb. 2006
(NCBI36/mm8) (mm8) Mouse July 2007 (NCBI37/mm9) (mm9) Mouse Jun. 2020
(GRCm39/mm39) (mm39) Mouse May 2004 (mm5) Mouse lemur Jul. 2007 (Broad/micMur1)
(micMur1) Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) Musa acuminata
Banana Genome v1.0 Musa acuminata Banana Genome v2.0 Musa acuminata
Genescope-Cirad Mycobacterium abscessus (15691) Mycobacterium avium 104 (88)
Mycobacterium avium subsp. paratuberculosis K-10 (91) Mycobacterium bovis
AF2122/97 (89) Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) Mycobacterium
gilvum PYR-GCK (15760) Mycobacterium leprae TN (90) Mycobacterium smegmatis str.
MC2 155 (92) Mycobacterium sp. JLS (16079) Mycobacterium sp. KMS (16081)
Mycobacterium sp. MCS (15762) Mycobacterium tuberculosis CDC1551 (223)
Mycobacterium tuberculosis F11 (15642) Mycobacterium tuberculosis H37Ra (18883)
Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) Mycobacterium ulcerans Agy99
(16230) Mycobacterium vanbaalenii PYR-1 (15761) Mycoplasma agalactiae PG2
(16095) Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) Mycoplasma
gallisepticum R (409) Mycoplasma genitalium G37 (mycoGeni) Mycoplasma
hyopneumoniae 232 (13120) Mycoplasma hyopneumoniae 7448 (10639) Mycoplasma
hyopneumoniae J (10675) Mycoplasma mobile 163K (10697) Mycoplasma mycoides
subsp. mycoides SC str. PG1 (10616) Mycoplasma penetrans HF-2 (176) Mycoplasma
pneumoniae M129 (99) Mycoplasma pulmonis UAB CTIP (100) Mycoplasma synoviae 53
(10676) Myxococcus xanthus DK 1622 (myxoXant_DK_1622) Naked mole-rat Jan. 2012
(Broad HetGla_female_1.0/hetGla2) (hetGla2) Naked mole-rat Jul. 2011 (BGI
HetGla_1.0/hetGla1) (hetGla1) Nanoarchaeum equitans Kin4-M (nanEqu1)
Natronomonas pharaonis DSM 2160 (natrPhar1) Neisseria gonorrhoeae FA 1090
(neisGono_FA1090_1) Neisseria meningitidis 053442 (16393) Neisseria meningitidis
FAM18 (neisMeni_FAM18_1) Neisseria meningitidis MC58 (neisMeni_MC58_1) Neisseria
meningitidis Z2491 (neisMeni_Z2491_1) Nelumbo nucifera LOTUS-DB v1.1
Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) Nile tilapia Jan. 2011
(Broad oreNil1.0/oreNil1) (oreNil1) Nile tilapia Jan. 2011 (Broad
oreNil1.1/oreNil2) (oreNil2) Nitratiruptor sp. SB155-2 (18963) Nitrobacter
hamburgensis X14 (13473) Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255)
Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) Nitrosomonas europaea ATCC
19718 (nitrEuro) Nitrosomonas eutropha C91 (13913) Nitrosopumilus maritimus SCM1
(19265) Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) Nocardia
farcinica IFM 10152 (nocaFarc_IFM10152) Nocardioides sp. JS614 (nocaJS61)
Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) Northern carmine
bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) Northern fulmar May 2014
(ASM69083v1/fulGla1) (fulGla1) Northern pike Jul 2014 (EsoLuc1.0/esoLuc1)
(esoLuc1) Nostoc sp. PCC 7120 (nostSp) Notyet Oct. 2011 (notYet1/calMil0)
(calMil0) Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444)
Oceanobacillus iheyensis HTE831 (oceaIhey) Ochrobactrum anthropi ATCC 49188
(19485) Oenococcus oeni PSU-1 (oenoOeni_PSU_1) Oikopleura dioica (od01) Onion
yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) Opossum Jan. 2006
(Broad/monDom4) (monDom4) Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1)
Opossum Oct. 2006 (Broad/monDom5) (monDom5) Orangutan Jan. 2018
(Susie_PABv2/ponAbe3) (ponAbe3) Orangutan July 2007 (WUGSC 2.0.2/ponAbe2)
(ponAbe2) Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) Oropetium
thomaeum JGI v1.0 Oryza brachyantha Ensembl Plants v1.4b Oryza sativa ssp.
indica 9311_BGF_2005 Oryza sativa ssp. indica MBKBASE v1.0 Oryza sativa ssp.
japonica JGI v7.0 Oryza sativa ssp. japonica MSU RGAP 7 Ostreococcus lucimarinus
JGI 2.0 Ostreococcus lucimarinus JGI v2.0 assembly and annotation Ostrich 06
Jun-2014 (ASM69896v1/strCam1) (strCam1) P. falciparum Plasmodium falciparum
(?/falciparum) (falciparum) P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2)
(priPac2) P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) Pacific walrus
Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) Painted turtle Dec. 2011
(v3.0.1/chrPic1) (chrPic1) Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2)
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) Parabacteroides distasonis
ATCC 8503 (13485) Paracoccus denitrificans PD1222 (paraDeni_PD1222) Parnell's
mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) Parrot Jan. 2013
(AV1/amaVit1) (amaVit1) Parvibaculum lavamentivorans DS-1 (17639) Pasteurella
multocida subsp. multocida str. Pm70 (pastMult) Pectobacterium atrosepticum
SCRI1043 (erwiCaro_ATROSEPTICA) Pediococcus pentosaceus ATCC 25745
(pediPent_ATCC25745) Pelobacter carbinolicus DSM 2380 (peloCarb) Pelobacter
propionicus DSM 2379 (13384) Pelodictyon luteolum DSM 273 (peloLute_DSM273)
Pelotomaculum thermopropionicum SI (peloTher_SI) Peregrine falcon Feb 2013
(F_peregrinus_v1.0/falPer1) (falPer1) Petrotoga mobilis SJ95 (17679) Petunia
axillaris Sol Genomics v1.6.2 Phalaenopsis equestris Genomics v1.0
Photobacterium profundum SS9 (photProf_SS9) Photorhabdus luminescens subsp.
laumondii TTO1 (photLumi) Phyllostachys edulis NCGR v1.0 Physcomitrella patens
JGI assembly release v1.1 and COSMOSS annotation v1.6 Physcomitrella patens JGI
v3.3 Picrophilus torridus DSM 9790 (picrTorr1) Pig Aug. 2011 (SGSC
Sscrofa10.2/susScr3) (susScr3) Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11)
Pig May 2010 (Sscrofa9.58) Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2)
Pika Jul. 2008 (Broad/ochPri2) (ochPri2) Pika May 2012 (OchPri3.0/ochPri3)
(ochPri3) Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12)
(plasFalc3D7V12) Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) Platypus Mar.
2007 (WUGSC 5.0.1/ornAna1) (ornAna1) Polar bear 09 May-2014 (UrsMar_1.0/ursMar1)
(ursMar1) Polaromonas naphthalenivorans CJ2 (13418) Polaromonas sp. JS666
(polaJS66) Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) Poplar (Populus
trichocarpa) (Ptrichocarpa_156) Populus trichocarpa JGI assembly release v3.0,
annotation v3.0 Populus trichocarpa JGI v3.1 Porphyromonas gingivalis W83
(porpGing_W83) Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1)
Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) Primate Apr. 24. 2006 (UCSC
Recon/priMat13) (priMat13) Princess of Burundi May 2011 (NeoBri1.0/neoBri1)
(neoBri1) Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1)
Prochlorococcus marinus str. AS9601 (13548) Prochlorococcus marinus str. MIT
9211 (13551) Prochlorococcus marinus str. MIT 9215 (18633) Prochlorococcus
marinus str. MIT 9301 (15746) Prochlorococcus marinus str. MIT 9303 (13496)
Prochlorococcus marinus str. MIT 9312 (13910) Prochlorococcus marinus str. MIT
9313 (220) Prochlorococcus marinus str. MIT 9515 (13617) Prochlorococcus marinus
str. NATL1A (15660) Prochlorococcus marinus str. NATL2A (13911) Prochlorococcus
marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) Prochlorococcus marinus
subsp. pastoris str. CCMP1986 (213) Propionibacterium acnes KPA171202
(propAcne_KPA171202) Prosthecochloris vibrioformis DSM 265 (12607) Prunus
persica JGI release v1.0 Prunus persica JGI v2.1 Przewalski horse Jun 2014
(Burgud/equPrz1) (equPrz1) Pseudoalteromonas atlantica T6c (13454)
Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) Pseudomonas aeruginosa
PA7 (16720) Pseudomonas aeruginosa PAO1 (pseuAeru) Pseudomonas aeruginosa
UCBPP-PA14 (386) Pseudomonas entomophila L48 (16800) Pseudomonas fluorescens
Pf-5 (327) Pseudomonas fluorescens PfO-1 (12) Pseudomonas mendocina ymp (17457)
Pseudomonas putida F1 (13909) Pseudomonas putida GB-1 (17629) Pseudomonas putida
KT2440 (267) Pseudomonas putida W619 (17053) Pseudomonas stutzeri A1501 (16817)
Pseudomonas syringae pv. phaseolicola 1448A (12416) Pseudomonas syringae pv.
syringae B728a (323) Pseudomonas syringae pv. tomato str. DC3000 (359)
Psychrobacter arcticus 273-4 (psycArct_273_4) Psychrobacter cryohalolentis K5
(13920) Psychrobacter sp. PRwf-1 (15759) Psychromonas ingrahamii 37
(psycIngr_37) Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) Purple
Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) Pyrobaculum
aerophilum str. IM2 (pyrAer1) Pyrobaculum arsenaticum DSM 13514 (pyroArse1)
Pyrobaculum calidifontis JCM 11548 (pyroCali1) Pyrobaculum islandicum DSM 4184
(pyroIsla1) Pyrococcus abyssi GE5 (pyrAby1) Pyrococcus furiosus DSM 3638
(pyrFur2) Pyrococcus horikoshii OT3 (pyrHor1) Pyrus bretschneideri Pear Genome
Project v1.0 Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2) Rabbit May 2005
(Broad/oryCun1) (oryCun1) Ralstonia eutropha H16 (13603) Ralstonia eutropha
JMP134 (ralsEutr_JMP134) Ralstonia metallidurans CH34 (250) Ralstonia
solanacearum GMI1000 (ralsSola) Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) Rat June 2003
(Baylor 3.1/rn3) (rn3) Rat Mar. 2012 (RGSC 5.0/rn5) (rn5) Rat Nov. 2004 (Baylor
3.4/rn4) (rn4) Rat Nov. 2020 (mRatBN7.2/rn7) (rn7) Red Flour Beetle (Tribolium
castaneum) (Tcas_3.0) Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1)
Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) Red-throated loon May
2014 (ASM69087v1/gavSte1) (gavSte1) Renibacterium salmoninarum ATCC 33209
(19227) RepBase Jun. 2012 (hg19/repBase0) (repBase0) RepBase Sep. 2012
(17.08/repBase1) (repBase1) Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1)
(resEbo1) Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) Rhesus Jan. 2006 (MGSC
Merged 1.0/rheMac2) (rheMac2) Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7)
(rheMac7) Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) Rhesus Oct. 2010
(BGI CR_1.0/rheMac3) (rheMac3) Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1)
(bucRhi1) Rhizobium etli CFN 42 (rhizEtli_CFN_42) Rhizobium leguminosarum bv.
viciae 3841 (344) Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) Rhodobacter
sphaeroides ATCC 17025 (15755) Rhodobacter sphaeroides ATCC 17029 (15754)
Rhodococcus sp. RHA1 (rhodRHA1) Rhodoferax ferrireducens T118 (13908)
Rhodopirellula baltica SH 1 (pireSp) Rhodopseudomonas palustris BisA53 (15751)
Rhodopseudomonas palustris BisB18 (15750) Rhodopseudomonas palustris BisB5
(15749) Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) Rhodopseudomonas
palustris HaA2 (15747) Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170)
Rice (Oryza sativa ssp. japonica var. Nipponbare)
(oryza_sativa_japonica_nipponbare_IRGSP4.0) Ricinus communis JCVI 1.0 Ricinus
communis JGI v0.1 Rickettsia akari str. Hartford (12953) Rickettsia bellii OSU
85-389 (17237) Rickettsia bellii RML369-C (rickBell_RML369_C) Rickettsia
canadensis str. McKiel (12952) Rickettsia conorii str. Malish 7 (42) Rickettsia
felis URRWXCal2 (13884) Rickettsia massiliae MTU5 (18271) Rickettsia prowazekii
str. Madrid E (43) Rickettsia rickettsii str. 'Sheila Smith' (9636) Rickettsia
rickettsii str. Iowa (19943) Rickettsia typhi str. Wilmington (10679) Rifleman
27 May 2014 (ASM69581v1/acaChl1) (acaChl1) Rock hyrax Jul. 2008 (Broad/proCap1)
(proCap1) Rock pigeon Dec 2017 (Cliv_2.1/colLiv2) Rock pigeon Feb 2013
(Cliv_1.0/colLiv1) (colLiv1) Rodent Apr. 24. 2006 (UCSC Recon/rodEnt13)
(rodEnt13) Roseiflexus castenholzii DSM 13941 (13462) Roseiflexus sp. RS-1
(16190) Roseobacter denitrificans OCh 114 (roseDeni_OCH_114) Rubrobacter
xylanophilus DSM 9941 (rubrXyla_DSM9941) S. cerevisae str. S288C
(Saccharomyces_cerevisiae_S288C_SGD2010) S. cerevisiae Apr. 2011
(SacCer_Apr2011/sacCer3) (sacCer3) S. cerevisiae June 2008 (SGD/sacCer2)
(sacCer2) S. cerevisiae Oct. 2003 (SGD/sacCer1) (sacCer1) S. lycopersicum
(Tomato) Feb 2019 (SL4.0) S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1)
S. purpuratus Feb. 2009 (BCM-HGSC Spur_v2.5/strPur3) (strPur3) S. purpuratus
Jun. 2011 (BCM-HGSC Spur_v3.1/strPur4) (strPur4) S. purpuratus Sep. 2006 (Baylor
2.1/strPur2) (strPur2) S.enterica_NC_016810.1 SARS coronavirus Apr. 2003
(GenBank Apr. 14 '03/sc1) (sc1) SARS-CoV-2 Jan. 2020 (NC_045512.2) (wuhCor1)
SARS-CoV-2 isolate Wuhan-Hu-1, complete genome (NC_045512) Saccharophagus
degradans 2-40 (saccDegr_2_40) Saccharopolyspora erythraea NRRL 2338
(saccEryt_NRRL_2338) Saccharum spontaneum v20190103 Saker falcon Feb 2013
(F_cherrug_v1.0/falChe1) (falChe1) Salinibacter ruber DSM 13855
(saliRube_DSM13855) Salinispora arenicola CNS-205 (17109) Salinispora tropica
CNB-440 (saliTrop_CNB_440) Salmonella enterica (NC_016810.1) Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- (13030) Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67 (9618) Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150 (salmEnte_PARATYPI_ATC) Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7 (27803) Salmonella enterica subsp.
enterica serovar Typhi str. CT18 (salmTyph) Salmonella enterica subsp. enterica
serovar Typhi str. Ty2 (salmTyph_TY2) Salmonella typhimurium LT2 (241) Saltwater
crocodile June 2011 (UCSC cPoro_v0.1c45/croPor0) (croPor0) Scarlet Macaw Jun
2013 (SMACv1.1/araMac1) (araMac1) Schrenkiella parvula Thellungiella v2.0
(TpV84) Sea hare Jul. 2013 (aplCal0/aplCal0) (aplCal0) Sea hare Sept. 2008
(Broad 2.0/aplCal1) (aplCal1) Selaginella moellendorffii JGI v1.0 Selaginella
moellendorffii NCBIr100 Serratia proteamaculans 568 (17459) Setaria italica JGI
8.3X chromosome-scale assembly release 2.0, annotation version 2.1 Setaria
italica JGI v2.2 Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) (oviAri3) Sheep Feb.
2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1) Sheep Nov. 2015 (Oar_v4.0/oviAri4)
(oviAri4) Sheepshead minnow Jul 2014 (C_variegatus-1.0/cypVar1) (cypVar1)
Shewanella amazonensis SB2B (shewAmaz) Shewanella baltica OS155 (shewBalt)
Shewanella baltica OS185 (17643) Shewanella baltica OS195 (13389) Shewanella
denitrificans OS217 (shewDeni) Shewanella frigidimarina NCIMB 400 (shewFrig)
Shewanella halifaxensis HAW-EB4 (20241) Shewanella loihica PV-4 (shewLoihPV4)
Shewanella oneidensis MR-1 (shewOnei) Shewanella pealeana ATCC 700345 (17415)
Shewanella putrefaciens CN-32 (shewPutrCN32) Shewanella sediminis HAW-EB3
(18789) Shewanella sp. ANA-3 (shewANA3) Shewanella sp. MR-4 (shewMR4) Shewanella
sp. MR-7 (shewMR7) Shewanella sp. W3-18-1 (shewW318) Shewanella woodyi ATCC
51908 (17455) Shigella boydii Sb227 (13146) Shigella dysenteriae Sd197 (13145)
Shigella flexneri 2a str. 2457T (408) Shigella flexneri 2a str. 301
(shigFlex_2A) Shigella flexneri 5 str. 8401 (16375) Shigella sonnei Ss046
(13151) Shrew Aug. 2008 (Broad/sorAra2) (sorAra2) Shrew June 2006
(Broad/sorAra1) (sorAra1) Silicibacter pomeroyi DSS-3 (siliPome_DSS_3)
Silicibacter sp. TM1040 (13040) Silkworm (Bombyx_mori_p50T_2.0) Simhuman Oct.
2011 (simHuman/simHuman) (simHuman) Simhumanmammal Oct. 2011
(simHumanMammal/simHumanMammal) (simHumanMammal) Simmam Jan. 2011
(SimMamV1/simHumanMam) (simHumanMam) Simprim Jan. 2011 (SimPrimV1/simHumanPrim)
(simHumanPrim) Simrefmam Jan. 2011 (SimRefMamV1/simRefMam) (simRefMam)
Sinorhizobium medicae WSM419 (16304) Sinorhizobium meliloti 1021 (sinoMeli)
Sloth Jul. 2008 (Broad/choHof1) (choHof1) Snail Jun. 2013 (bioGla0/bioGla0)
(bioGla0) Sodalis glossinidius str. 'morsitans' (sodaGlos_MORSITANS) Solanum
lycopersicum ITAG 2.3 Solanum lycopersicum Sol Genomics itag2.4 Solanum
tuberosum ITAG 001 Solanum tuberosum JGI v4.03 Solibacter usitatus Ellin6076
(soliUsit_ELLIN6076) Sorangium cellulosum 'So ce 56' (28111) Sorghum bicolor JGI
1.4 Sorghum bicolor JGI v3.1 Southern platyfish Jan 2012
(Xiphophorus_maculatus-4.4.2/xipMac1) (xipMac1) Southern sea otter Jun. 2019
(ASM641071v1/enhLutNer1) (enhLutNer1) Speckled mousebird May 2014
(ASM69071v1/colStr1) (colStr1) Sperm whale Sep. 2013
(Physeter_macrocephalus-2.0.2/phyCat1) (phyCat1) Sphingomonas wittichii RW1
(17343) Sphingopyxis alaskensis RB2256 (sphiAlas_RB2256) Spiny softshell turtle
May 2013 (ASM38561v1/apaSpi1) (apaSpi1) Spirodela polyrhiza JGI v2.0 Spotted gar
Dec 2011 (LepOcu1/lepOcu1) (lepOcu1) Squirrel Feb. 2008 (Broad/speTri1)
(speTri1) Squirrel Nov. 2011 (Broad/speTri2) (speTri2) Squirrel monkey Oct. 2011
(Broad/saiBol1) (saiBol1) Staphylococcus aureus RF122 (63) Staphylococcus aureus
subsp. aureus COL (238) Staphylococcus aureus subsp. aureus JH1 (15758)
Staphylococcus aureus subsp. aureus JH9 (15757) Staphylococcus aureus subsp.
aureus MRSA252 (265) Staphylococcus aureus subsp. aureus MSSA476 (266)
Staphylococcus aureus subsp. aureus MW2 (306) Staphylococcus aureus subsp.
aureus Mu3 (18509) Staphylococcus aureus subsp. aureus Mu50 (stapAure_MU50)
Staphylococcus aureus subsp. aureus N315 (264) Staphylococcus aureus subsp.
aureus NCTC 8325 (237) Staphylococcus aureus subsp. aureus USA300 (16313)
Staphylococcus aureus subsp. aureus USA300_TCH1516 (19489) Staphylococcus aureus
subsp. aureus str. Newman (18801) Staphylococcus epidermidis ATCC 12228 (279)
Staphylococcus epidermidis RP62A (64) Staphylococcus haemolyticus JCSC1435
(12508) Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (15596)
Staphylothermus marinus F1 (stapMari1) Star-nosed mole Mar 2012
(ConCri1.0/conCri1) (conCri1) Starlet sea anemone Jun. 2007 (JGI-PDF/nemVec1)
(nemVec1) Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1) Straw colored fruit
bat 13 Sep 2013 (ASM46528v1/eidHel1) (eidHel1) Streptococcus agalactiae 2603V/R
(330) Streptococcus agalactiae A909 (326) Streptococcus agalactiae NEM316 (334)
Streptococcus gordonii str. Challis substr. CH1 (66) Streptococcus mutans UA159
(333) Streptococcus pneumoniae D39 (16374) Streptococcus pneumoniae Hungary19A-6
(28035) Streptococcus pneumoniae R6 (278) Streptococcus pneumoniae TIGR4 (277)
Streptococcus pyogenes M1 GAS (strePyog_M1_GAS) Streptococcus pyogenes MGAS10270
(16364) Streptococcus pyogenes MGAS10394 (12469) Streptococcus pyogenes
MGAS10750 (16366) Streptococcus pyogenes MGAS2096 (16365) Streptococcus pyogenes
MGAS315 (311) Streptococcus pyogenes MGAS5005 (13888) Streptococcus pyogenes
MGAS6180 (13887) Streptococcus pyogenes MGAS8232 (286) Streptococcus pyogenes
MGAS9429 (16363) Streptococcus pyogenes SSI-1 (301) Streptococcus pyogenes str.
Manfredo (270) Streptococcus sanguinis SK36 (13942) Streptococcus suis 05ZYH33
(17153) Streptococcus suis 98HAH33 (17155) Streptococcus thermophilus CNRZ1066
(13163) Streptococcus thermophilus LMD-9 (13773) Streptococcus thermophilus LMG
18311 (13162) Streptomyces avermitilis MA-4680 (189) Streptomyces coelicolor
A3(2) (streCoel) Sudan ebolavirus Aug. 2014 (NC_006432.1/sudEbo1) (sudEbo1)
Sulfolobus acidocaldarius DSM 639 (sulfAcid1) Sulfolobus solfataricus P2
(sulSol1) Sulfolobus tokodaii str. 7 (sulfToko1) Sulfurimonas denitrificans DSM
1251 (thioDeni_ATCC33889) Sulfurovum sp. NBC37-1 (18965) Sunbittern May 2014
(ASM69077v1/eurHel1) (eurHel1) Symbiobacterium thermophilum IAM 14863
(symbTher_IAM14863) Synechococcus elongatus PCC 6301 (13282) Synechococcus
elongatus PCC 7942 (10645) Synechococcus sp. CC9311 (12530) Synechococcus sp.
CC9605 (13643) Synechococcus sp. CC9902 (13655) Synechococcus sp.
JA-2-3B'a(2-13) (16252) Synechococcus sp. JA-3-3Ab (16251) Synechococcus sp. PCC
7002 (28247) Synechococcus sp. RCC307 (13654) Synechococcus sp. WH 7803 (13642)
Synechococcus sp. WH 8102 (syneSp_WH8102) Synechocystis sp. PCC 6803 (synePCC6)
Syntrophobacter fumaroxidans MPOB (syntFuma_MPOB) Syntrophomonas wolfei subsp.
wolfei str. Goettingen (syntWolf_GOETTINGEN) Syntrophus aciditrophicus SB
(syntAcid_SB) T. castaneum Sep. 2005 (Baylor 2.0/triCas2) (triCas2) Tai forest
ebolavirus Aug. 2014 (NC_014372.1/taiEbo1) (taiEbo1) Tarenaya hassleriana RefSeq
v1 Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1) Tarsier Sep. 2013
(Tarsius_syrichta-2.0.1/tarSyr2) (tarSyr2) Tasmanian devil Feb. 2011 (WTSI
Devil_ref v7.0/sarHar1) (sarHar1) Tenrec July 2005 (Broad/echTel1) (echTel1)
Tenrec Nov. 2012 (Broad/echTel2) (echTel2) Tetraodon Feb. 2004 (Genoscope
7/tetNig1) (tetNig1) Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2)
Thellungiella parvula TpV84 Theobroma cacao D. Gilbert public gene set 8 Mar
2012 on assembly v1.1 Theobroma cacao Dec 2010 (CIRAD/Theobroma cacao Belizian
Criollo) (Tcacao_1.0) Theobroma cacao RefSeq v1.1 Thermoanaerobacter
pseudethanolicus ATCC 33223 (13901) Thermoanaerobacter sp. X514 (16394)
Thermoanaerobacter tengcongensis MB4 (therTeng) Thermobifida fusca YX
(therFusc_YX) Thermococcus kodakarensis KOD1 (therKoda1) Thermofilum pendens Hrk
5 (therPend1) Thermoplasma acidophilum DSM 1728 (therAcid1) Thermoplasma
volcanium GSS1 (therVolc1) Thermosipho melanesiensis BI429 (17249)
Thermosynechococcus elongatus BP-1 (therElon) Thermotoga lettingae TMO (15644)
Thermotoga maritima MSB8 (therMari) Thermotoga petrophila RKU-1 (therPetr_RKU_1)
Thermotoga sp. RQ2 (19543) Thermus thermophilus HB27 (therTher_HB27) Thermus
thermophilus HB8 (therTher_HB8) Thiobacillus denitrificans ATCC 25259
(thioDeni_ATCC25259) Thiomicrospira crunogena XCL-2 (thioCrun_XCL_2) Tibetan
antelope May 2013 (PHO1.0/panHod1) (panHod1) Tibetan frog Mar. 2015
(BGI_ZX_2015/nanPar1) (nanPar1) Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1)
(pseHum1) Tiger rockfish 22 Oct-2013 (Snig1.0/sebNig1) (sebNig1) Tongue sole 28
Jan-2014 (Cse_v1.0/cynSem1) (cynSem1) Tree shrew Dec. 2006 (Broad/tupBel1)
(tupBel1) Treponema denticola ATCC 35405 (4) Treponema pallidum subsp. pallidum
str. Nichols (trepPall) Trichodesmium erythraeum IMS101 (tricEryt_IMS101)
Trifolium pratense JGI v2 Triticum aestivum Ensembl Plants TGACv1 Triticum
aestivum IWGSC1.1 Triticum turgidum Svevo v1.0 Tropheryma whipplei TW08/27
(tropWhip_TW08_27) Tropheryma whipplei str. Twist (95) Trypanosoma brucei 427
Lister strain genome build 37 Turkey Dec. 2009 (TGC Turkey_2.01/melGal1)
(melGal1) Turkey Nov. 2014 (Turkey_5.0/melGal5) (melGal5) Upper Galilee
mountains blind mole rat Jun 2014 (S.galili_v1.0/nanGal1) (nanGal1) Ureaplasma
parvum serovar 3 str. ATCC 27815 (19087) Ureaplasma parvum serovar 3 str. ATCC
700970 (ureaUrea) Utricularia gibba CoGe v4 Verminephrobacter eiseniae EF01-2
(vermEise_EF01_2) Vibrio cholerae O1 biovar eltor str. N16961 (vibrChol1) Vibrio
cholerae O395 (vibrChol_O395_1) Vibrio fischeri ES114 (vibrFisc_ES114_1) Vibrio
harveyi ATCC BAA-1116 (19857) Vibrio parahaemolyticus RIMD 2210633 (vibrPara1)
Vibrio vulnificus CMCP6 (vibrVuln_CMCP6_1) Vibrio vulnificus YJ016
(vibrVuln_YJ016_1) Vigna radiata var. radiata LIS v6 Vitis vinifera JGI
12xMarch2010 Vitis vinifera genescope v1 Wallaby Nov. 2007 (Baylor 1.0/macEug1)
(macEug1) Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) (macEug2) Water buffalo Sep.
2013 (UMD_CASPUR_WB_2.0/bubBub1) (bubBub1) Weddell seal Mar 2013
(LepWed1.0/lepWed1) (lepWed1) West African lungfish Jul 2021 (Protopterus
annectens, PAN1.0) (GCF_019279795.1) White rhinoceros May 2012
(CerSimSim1.0/cerSim1) (cerSim1) White throated tinamou Aug 2014
(ASM70537v2/tinGut2) (tinGut2) White throated tinamou Jun 2014
(ASM70537v1/tinGut1) (tinGut1) White-tailed deer Apr 2017 (Odocoileus
virginianus) (GCF_002102435.1, Ovir.te_1.0) White-tailed eagle May 2014
(ASM69140v1/halAlb1) (halAlb1) White-tailed tropicbird May 2014
(ASM68728v1/phaLep1) (phaLep1) White-throated sparrow Apr 2013
(ASM38545v1/zonAlb1) (zonAlb1) Wigglesworthia glossinidia endosymbiont of
Glossina brevipalpis (wiggBrev) Wild yak Oct 2011 (BosGru_v2.0/bosMut1)
(bosMut1) Wolbachia endosymbiont of Drosophila melanogaster
(wolbEndo_OF_DROSOPHIL) Wolbachia endosymbiont strain TRS of Brugia malayi
(12475) Wolinella succinogenes DSM 1740 (woliSucc) X. tropicalis Aug. 2005 (JGI
4.1/xenTro2) (xenTro2) X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)
(xenTro9) X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) (xenTro3) X. tropicalis Nov.
2019 (UCB_Xtro_10.0/xenTro10) (xenTro10) X. tropicalis Oct. 2004 (JGI
3.0/xenTro1) (xenTro1) X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) (xenTro7)
Xanthobacter autotrophicus Py2 (15756) Xanthomonas axonopodis pv. citri str. 306
(297) Xanthomonas campestris pv. campestris str. 8004 (15) Xanthomonas
campestris pv. campestris str. ATCC 33913 (xantCamp) Xanthomonas campestris pv.
vesicatoria str. 85-10 (13649) Xanthomonas oryzae pv. oryzae KACC10331 (12931)
Xanthomonas oryzae pv. oryzae MAFF 311018 (16297) Xanthomonas oryzae pv. oryzae
PXO99A (Xanthomonas_oryzae_PXO99A) Xenopus tropicalis (xenTro9.1) Xylella
fastidiosa 9a5c (xyleFast) Xylella fastidiosa M12 (17823) Xylella fastidiosa
Temecula1 (285) Yangtze river dolphin 31 Jul 2013
(Lipotes_vexillifer_v1/lipVex1) (lipVex1) Yellow-throated sandgrouse Jun 2014
(ASM69924v1/pteGut1) (pteGut1) Yellowbelly pufferfish May 2013 (version 1 of
Takifugu flavidus genome/takFla1) (takFla1) Yersinia enterocolitica subsp.
enterocolitica 8081 (190) Yersinia pestis Angola (16067) Yersinia pestis Antiqua
(16645) Yersinia pestis CO92 (yersPest_CO92) Yersinia pestis KIM (288) Yersinia
pestis Nepal516 (16646) Yersinia pestis Pestoides F (16700) Yersinia pestis
biovar Microtus str. 91001 (10638) Yersinia pseudotuberculosis IP 31758 (16070)
Yersinia pseudotuberculosis IP 32953 (12950) Yersinia pseudotuberculosis YPIII
(28743) Zaire ebolavirus Aug. 2014 (NC_002549.1/zaiEbo1) (zaiEbo1) Zea mays B73
AGP v4.0 Zea mays PH207 v1.0 Zebra Mbuna Mar 2012 (MetZeb1.1/mayZeb1) (mayZeb1)
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) (taeGut2) Zebra finch Jul. 2008
(WUGSC 3.2.4/taeGut1) (taeGut1) Zebrafish (GRCz11/danRer11) without alt contigs
Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6) Zebrafish Jul. 2010 (Zv9/danRer7)
(danRer7) Zebrafish July 2007 (Zv7/danRer5) (danRer5) Zebrafish Mar. 2006
(Zv6/danRer4) (danRer4) Zebrafish May 2005 (Zv5/danRer3) (danRer3) Zebrafish May
2017 (GRCz11/danRer11) (danRer11) Zebrafish Sep. 2014 (GRCz10/danRer10)
(danRer10) Zostera marina JGI v2.2 Zoysia japonica ssp. nagirizaki Zoysia Genome
Database v1.1 Zymomonas mobilis subsp. mobilis ZM4 (zymoMobi_ZM4) canFam3
chimp/human Jun. 2008 (UCSC Recon/homPan20) (homPan20) hg19Haplotypes Feb. 2009
(GRCh37/hg19Haps) (hg19Haps) mm9 with ERCC spike-in orang/human Jun. 2008 (UCSC
Recon/homIni20) (homIni20) pUC18 Plasmid (pUC18) phiX174 (phiX) tarInv Dec. 2013
(GRCh38Tar/tarIhg38) (tarIhg38) uncultured methanogenic archaeon RC-I
(uncuMeth_RCI)
Close Start Reset
 
Drop files here

Size Status

Collection Type:
List

List Pair List of Pairs File Type:
Auto-detect

Auto-detectab1agilentbrukeryep.d.taragilentmasshunter.d.taragpampvis2arbarb.gzarffasn1asn1-binaryaugustusaviaxtbambcfbcf_uncompressedbcsl.modelbcsl.tsbedbed12bed6bed_tabix.gzbedgraphbedstrictbgzipbigbedbigwigbilbiom1biom2blastxmlblibbref3brukerbaf.d.tarbrukertdf.d.tarbuscastepcelcellchira.sqlitechrintcifcismlckptcmapcmlconsensusxmlcoolcpscptcramcsfastacsvctctl.resultcuffdiff.sqlitecxbd3_hierarchydaadada2_dadadada2_errorratesdada2_mergepairsdada2_sequencetabledada2_uniquesdbndbnsfp.tabulardcddeeptools_compute_matrix_archivedeeptools_coverage_matrixden_fmtdlibdrfdtadta2ddziedredtaelandelandmultielibemblencodepeakexcel.xlsexpression.jsonextxyzfaifast5fast5.tarfast5.tar.bz2fast5.tar.gzfastafasta.gzfastgfastqfastq.bz2fastq.gzfastqcssangerfastqcssanger.bz2fastqcssanger.gzfastqilluminafastqillumina.bz2fastqillumina.gzfastqsangerfastqsanger.bz2fastqsanger.gzfastqsolexafastqsolexa.bz2fastqsolexa.gzfcsfeaturexmlffdataffindexfitsflowclrflowframeflowmfiflowscoreflowsetflowstat1flowstat2flowstat3flowtextflvfpsfqtocfsomgafa.sqlitegalgatk_dbsnpgatk_intervalgatk_recalgatk_reportgatk_tranchegemini.sqlitegenbankgenbank.gzgenenotebookgeojsongfa1gfa1.gzgfa2gfa2.gzgffgff3gff3.bz2gff3.gzgff_tabix.gzgiigii.gzgmsh.geogmsh.mshgprgrdgrd.tgzgribgrogtfh5h5adh5mlmhdf4hdrhdthep.roothexrd.accepted_orientationshexrd.eta_ome.npzhexrd.images.npzhexrd.materials.h5hexrd.scored_orientations.npzhexrd.ymlhhrhic_matrixhlfhmm2hmm3ibdicmidatidatidpdbidxmlimgt.jsoninchiinpcrdintermine_tabularintervalipynbitpjellyfishjp2jpgjsonjsonldjuicebox_hicjuicer_medium_tabix.gzkallisto.idxkroeniklavlenloommafmascotxmlmaskinfo-asn1maskinfo-asn1-binarymatmcoolmdpmemepspmemexmlmeryldbmetacyto_clr.txtmetacyto_stats.txtmetacyto_summary.txtmgfmkvmolmol2mongodbmothur.accnosmothur.alignmothur.align.checkmothur.align.reportmothur.axesmothur.cons.taxonomymothur.count_tablemothur.designmothur.distmothur.filtermothur.filtered.masked.quanmothur.filtered.quanmothur.freqmothur.groupsmothur.listmothur.lower.distmothur.mapmothur.masked.quanmothur.namesmothur.oligosmothur.otumothur.otu.corrmothur.otulabelsmothur.pair.distmothur.quanmothur.rabundmothur.rdp.taxonomymothur.ref.taxonomymothur.relabundmothur.sabundmothur.seq.taxonomymothur.sff.flowmothur.sharedmothur.square.distmothur.summarymothur.tax.summarymothur.tremovmp3mp4mpgmrcmrmms2mshmspmtxmz.sqlitemz5mzdatamzidmzmlmzqmzqcmztabmztab2mzxmln3ncbi_genome_dataset.zipncbitaxonomy.sqlitendxneper.mscellneper.pointsneper.points.tsvneper.tesrneper.tessnetcdfnewicknexnhxnii1nii1.gznii2nii2.gznmrmlno_unzip.zipnpzntoboodgiome.tiffonnxoswowloxlicgoxligloxlingoxlissoxlistoxlitspafpaf.gzparparamparamxmlparquetpdbpdbqtpdfpeffpeplistpeptideshaker_archivepepxmlpepxml.tsvpharphylipphyloseqphyloxmlpicard_interval_listpileuppithya.modelpithya.propertypithya.resultplyasciiplybinarypngpostgresqlpovpqppqrpretextprmtopprobamprobedprotobuf2protobuf3protxmlprotxml.tsvpslpsmspssm-asn1ptkscmpqcmlqcmlqiime2.tabularqname_sorted.bamqual454qualilluminaqualsolexaqualsolidqzaqzvrdatardata.camera.negativerdata.camera.positiverdata.camera.quickrdata.msnbase.rawrdata.scerdata.xcms.fillpeaksrdata.xcms.findchrompeaksrdata.xcms.grouprdata.xcms.rawrdata.xcms.retcorrdfrdock_asrdsrma6rna_epssamsbmlscfscidxscoolscoolsdfsearchgui_archivesf3sffsifsmatsmisnaphmmsnpeffdbsnpmatrixsnptestsource.csource.cppsource.cssource.gosource.hsource.pysource.rsspec.xmlsplib_noindexsqlitesqmasssrasra_manifest.tabularstarstlstockholmstorm.checkstorm.samplesvgtabulartabular.gztandemtartaxonomytcktextgridtgzthermo.rawtifftomltoptprtrackhubtrafoxmltrafoxmltramltrktrrtsvttltwobittxtuniprotxmlunsorted.bamvcfvcf_bgzipvelvgvisium.tar.gzvtkasciivtkbinarywatersmasslynx.raw.tarwavwiff.tarwiff2.tarwigxgxgmmlxlsxxmfaxmlxquest.xmlxsdxtcxvgxyzyamlzipzset.geof
Genome (set all):
unspecified (?)

unspecified (?) A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) A. gambiae
Oct. 2006 (AgamP3/anoGam3) (anoGam3) A. mellifera 04 Nov 2010 (Amel_4.5/apiMel4)
(apiMel4) A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) A. mellifera
July 2004 (Baylor 1.2/apiMel1) (apiMel1) ARS1 Aug. 2016 Capra hircus (goat) (San
Clemente 2016 USDA) (GCF_001704415.2) Aardvark May 2012 (OryAfe1.0/oryAfe1)
(oryAfe1) Acaryochloris marina MBIC11017 (12997) Acholeplasma laidlawii PG-8A
(19259) Acidiphilium cryptum JF-5 (acidCryp_JF_5) Acidobacteria bacterium
Ellin345 (acidBact_ELLIN345) Acidothermus cellulolyticus 11B (acidCell_11B)
Acidovorax avenae subsp. citrulli AAC00-1 (15708) Acidovorax sp. JS42 (acidJS42)
Acinetobacter baumannii (13001) Acinetobacter baumannii (28921) Acinetobacter
baumannii ATCC 17978 (17477) Acinetobacter baumannii Oct. 2012
(aciBauTYTH_1/aciBauTYTH_1) (aciBauTYTH_1) Acinetobacter sp. ADP1 (acinSp_ADP1)
Actinidia chinensis FEI Lab v1.0 Actinobacillus pleuropneumoniae L20
(actiPleu_L20) Actinobacillus pleuropneumoniae serovar 3 str. JL03 (19135)
Actinobacillus succinogenes 130Z (13370) Adelie penguin Jun 2014
(ASM69910v1/pygAde1) (pygAde1) Aeromonas hydrophila subsp. hydrophila ATCC 7966
(aeroHydr_ATCC7966) Aeromonas salmonicida subsp. salmonicida A449 (16723)
Aeropyrum pernix K1 (aerPer1) African Clawed Frog (xenLae9.2) African clawed
frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) (xenLae2) Afrotheria Apr. 24. 2006
(UCSC Recon/afrOth13) (afrOth13) Agrobacterium tumefaciens str. C58 (283)
Alcanivorax borkumensis SK2 (alcaBork_SK2) Alkalilimnicola ehrlichei MLHE-1
(alkaEhrl_MLHE_1) Alkaliphilus metalliredigens QYMF (13006) Alkaliphilus
oremlandii OhILAs (16083) Alpaca Jul. 2008 (Broad/vicPac1) (vicPac1) Alpaca Mar.
2013 (Vicugna_pacos-2.0.1/vicPac2) (vicPac2) Amazon molly 28 Oct-2013
(Poecilia_formosa-5.1.2/poeFor1) (poeFor1) Amborella trichopoda Amborella V1.0
Amborella trichopoda JGI v1.0 American alligator Aug. 2012 (allMis0.2/allMis1)
(allMis1) American alligator November 2011 (UCSC aMiss_v0.1c27/allMis0)
(allMis0) American crow Jun 2014 (ASM69197v1/corBra1) (corBra1) American
flamingo May 2014 (ASM68726v1/phoRub1) (phoRub1) Amur tiger 06 Sep 2013
(PanTig1.0/panTig1) (panTig1) Anabaena variabilis ATCC 29413
(anabVari_ATCC29413) Anaeromyxobacter dehalogenans 2CP-C (anaeDeha_2CP_C)
Anaeromyxobacter sp. Fw109-5 (17729) Ananas comosus JGI v3.0 Anaplasma marginale
str. St. Maries (anapMarg_ST_MARIES) Anaplasma phagocytophilum HZ (336) Anna's
hummingbird Jun 2014 (ASM69908v1/calAnn1) (calAnn1) Apostasia shenzhenica v1.0
Aquifex aeolicus VF5 (aquiAeol) Arabidopsis lyrata (Araly1) Arabidopsis lyrata
JGI v1.0 Arabidopsis lyrata JGI v2.1 Arabidopsis thaliana Arabidopsis thaliana
COL-0 Araport11 Arabidopsis thaliana COL-0 TAIR10 Arabidopsis thaliana TAIR10
(Arabidopsis_thaliana_TAIR10) (Arabidopsis_thaliana_TAIR10) Arabidopsis thaliana
TAIR7 (araTha1) Arabidopsis thaliana TAIR8 (arabidopsis_tair8) Arabidopsis
thaliana TAIR9 (arabidopsis) Arachis ipaensis Peanut Base v1.0 Archaeoglobus
fulgidus DSM 4304 (archFulg1) Arcobacter butzleri RM4018 (16319) Arctic lamprey
Sep 2013 (LetJap1.0/letCam1) (letCam1) Armadillo Dec. 2011 (Baylor/dasNov3)
(dasNov3) Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2) Armadillo May 2005
(Broad/dasNov1) (dasNov1) Arthrobacter aurescens TC1 (12512) Arthrobacter sp.
FB24 (arthFB24) Asparagus officinalis v1.1 Aster yellows witches'-broom
phytoplasma AYWB (13478) Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1)
(gadMor1) Azoarcus sp. BH72 (13217) Azoarcus sp. EbN1 (azoaSp_EBN1) Azorhizobium
caulinodans ORS 571 (azorCaul2) B. malayi Sep. 2007 (TIGR 1.0/bruMal1) (bruMal1)
Baboon Apr. 2017 (Panu_3.0/papAnu4) (papAnu4) Baboon Mar. 2012 (Baylor
Panu_2.0/papAnu2) (papAnu2) Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) (papHam1)
Bacillus amyloliquefaciens FZB42 (13403) Bacillus anthracis str. 'Ames Ancestor'
(10784) Bacillus anthracis str. Ames (baciAnth_AMES) Bacillus anthracis str.
Sterne (10878) Bacillus cereus ATCC 10987 (74) Bacillus cereus ATCC 14579 (384)
Bacillus cereus E33L (12468) Bacillus cereus subsp. cytotoxis NVH 391-98 (13624)
Bacillus clausii KSM-K16 (13291) Bacillus halodurans C-125 (baciHalo) Bacillus
licheniformis ATCC 14580 (12388) Bacillus licheniformis ATCC 14580 (13082)
Bacillus pumilus SAFR-032 (20391) Bacillus subtilis subsp. subtilis str. 168
(baciSubt) Bacillus thuringiensis serovar konkukian str. 97-27 (10877) Bacillus
thuringiensis str. Al Hakam (18255) Bacillus weihenstephanensis KBAB4 (13623)
Bacteroides fragilis NCTC 9343 (46) Bacteroides fragilis YCH46 (13067)
Bacteroides thetaiotaomicron VPI-5482 (bactThet_VPI_5482) Bacteroides vulgatus
ATCC 8482 (13378) Bactrian camel Dec 2011 (CB1/camFer1) (camFer1) Bald eagle Aug
2014 (Haliaeetus_leucocephalus-4.0/halLeu1) (halLeu1) Bar tailed trogon 16 Jun
2014 (ASM70340v1/apaVit1) (apaVit1) Barn owl May 2014 (ASM68720v1/tytAlb1)
(tytAlb1) Bartonella bacilliformis KC583 (16249) Bartonella henselae str.
Houston-1 (bartHens_HOUSTON_1) Bartonella quintana str. Toulouse (44) Bartonella
tribocorum CIP 105476 (28109) Baumannia cicadellinicola str. Hc (Homalodisca
coagulata) (baumCica_HOMALODISCA) Bdellovibrio bacteriovorus HD100 (bdelBact)
Beta vulgaris RefBeet 1.1 Beta vulgaris RefBeet v1.2 Bicolor damselfish May 2014
(Stegastes_partitus-1.0.2/stePar1) (stePar1) Bifidobacterium adolescentis ATCC
15703 (16321) Bifidobacterium longum NCC2705 (bifiLong) Big brown bat Jul 2012
(EptFus1.0/eptFus1) (eptFus1) Bison Oct. 2014 (Bison_UMD1.0/bisBis1) (bisBis1)
Black flying-fox Aug 2012 (ASM32557v1/pteAle1) (pteAle1) Black rockcod Jul 2014
(NC01/notCor1) (notCor1) Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) (panPan2)
Bonobo May 2012 (Max-Planck/panPan1) (panPan1) Bonobo May 2020
(Mhudiblu_PPA_v0/panPan3) (panPan3) Bordetella bronchiseptica RB50 (bordBron)
Bordetella parapertussis 12822 (25) Bordetella pertussis Tohama I (26)
Bordetella petrii DSM 12804 (28135) Boreoeutherian Apr. 24. 2006 (UCSC
Recon/borEut13) (borEut13) Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12)
(canHg12) Borrelia afzelii PKo (17057) Borrelia burgdorferi B31 (borrBurg)
Borrelia garinii PBi (12554) Brachypodium distachyon JGI v3.1 Brachypodium
distachyon MIPS 1.2 Bradyrhizobium japonicum USDA 110 (bradJapo) Bradyrhizobium
sp. BTAi1 (16137) Bradyrhizobium sp. ORS278 (19575) Brandt's myotis (bat) 28 Jun
2013 (ASM41265v1/myoBra1) (myoBra1) Braney test Jul. 2013 (braNey1/braNey1)
(braNey1) Brassica oleracea Ensembl Genomes v2.1 Brassica rapa Annotation v1.2
on assembly v1.1 (Phytozome 9.1) Brassica rapa JGI FPsc1.3 Brown kiwi Jun. 2015
(MPI-EVA AptMant0/aptMan1) (aptMan1) Brown roatelo Jun 2014 (ASM69576v1/mesUni1)
(mesUni1) Brucella abortus biovar 1 str. 9-941 (9619) Brucella canis ATCC 23365
(20243) Brucella melitensis 16M (brucMeli) Brucella melitensis biovar Abortus
2308 (16203) Brucella ovis ATCC 25840 (12514) Brucella suis 1330 (320) Brucella
suis ATCC 23445 (20371) Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) (octDeg1)
Buchnera aphidicola str. APS (Acyrthosiphon pisum) (buchSp) Buchnera aphidicola
str. Bp (Baizongia pistaciae) (256) Buchnera aphidicola str. Cc (Cinara cedri)
(16372) Buchnera aphidicola str. Sg (Schizaphis graminum) (312) Budgerigar Sep.
2011 (WUSTL v6.3/melUnd1) (melUnd1) Bundibugyo ebolavirus Aug. 2014
(NC_014373.1/bunEbo1) (bunEbo1) Burkholderia ambifaria AMMD (burkCepa_AMMD)
Burkholderia cenocepacia AU 1054 (burkCeno_AU_1054) Burkholderia cenocepacia
HI2424 (burkCeno_HI2424) Burkholderia cenocepacia MC0-3 (17929) Burkholderia
mallei ATCC 23344 (burkMall_ATCC23344) Burkholderia mallei NCTC 10229 (13943)
Burkholderia mallei NCTC 10247 (13946) Burkholderia mallei SAVP1 (13947)
Burkholderia multivorans ATCC 17616 (17407) Burkholderia pseudomallei 1106a
(burkPseu_1106A) Burkholderia pseudomallei 1710b (13954) Burkholderia
pseudomallei 668 (13953) Burkholderia pseudomallei K96243 (178) Burkholderia sp.
383 (burk383) Burkholderia thailandensis E264 (burkThai_E264) Burkholderia
vietnamiensis G4 (burkViet_G4) Burkholderia xenovorans LB400 (burkXeno_LB400)
Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) (pytBiv1)
Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) (hapBur1) Bushbaby Dec. 2006
(Broad/otoGar1) (otoGar1) Bushbaby Mar. 2011 (Broad/otoGar3) (otoGar3) C.
angaria Oct. 2010 (WS225/caeAng1) (caeAng1) C. brenneri Feb. 2008 (WUGSC
6.0.1/caePb2) (caePb2) C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) C.
brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) (caePb3) C. briggsae Apr. 2011
(WS225/cb4) (cb4) C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2) C. briggsae Jan.
2007 (WUGSC 1.0/cb3) (cb3) C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1)
C. elegans Aug. 2007 (WS180/ce5) (ce5) C. elegans Feb 2009 (WS200/ce7) (ce7) C.
elegans Feb. 2013 (WBcel235/ce11) (ce11) C. elegans Jan 2010 (WS210/ce9) (ce9)
C. elegans Jan. 2007 (WS170/ce4) (ce4) C. elegans Jun 2009 (WS204/ce8) (ce8) C.
elegans Mar. 2004 (WS120/ce2) (ce2) C. elegans March 2005 (WS140/ce3) (ce3) C.
elegans May 2008 (WS190/ce6) (ce6) C. elegans Oct. 2010 (WS220/ce10) (ce10) C.
intestinalis Apr. 2011 (Kyoto KH/ci3) (ci3) C. intestinalis Dec. 2002 (JGI
1.0/ci1) (ci1) C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) C. japonica Sep.
2010 (WUGSC 7.0.1/caeJap3) (caeJap3) C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4)
(caeJap4) C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2) C. japonica Mar.
2008 (WUGSC 3.0.2/caeJap1) (caeJap1) C. remanei Jul. 2007 (WS220/caeRem4)
(caeRem4) C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) C. remanei March
2005 (WUGSC prelim/caeRem1) (caeRem1) C. remanei May 2007 (WUGSC 15.0.1/caeRem3)
(caeRem3) C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1) C. savignyi July 2005
(Sidow Lab 2.0/cioSav2) (cioSav2) C. sp. 11 ju1373 Nov. 2010 (WUSTL
3.0.1/caeSp111) (caeSp111) C. sp. 7 ju1286 Nov. 2010 (WUSTL 4.0.1/caeSp71)
(caeSp71) C. sp. 9 ju1422 Nov. 2010 (WUSTL 3.0.1/caeSp91) (caeSp91) Cactus Nov.
2010 (CactusV3/cacTus3) (cacTus3) Cactus Oct. 2010 (Ngan10.1/cacTus2) (cacTus2)
Cactus Sep. 2010 (CactusV1/cacTus1) (cacTus1) Cajanus cajan Penguin Genomics
v5.0 Caldicellulosiruptor saccharolyticus DSM 8903 (caldSacc_DSM8903) Caldivirga
maquilingensis IC-167 (caldMaqu1) Campylobacter concisus 13826 (17159)
Campylobacter curvus 525.92 (17161) Campylobacter fetus subsp. fetus 82-40
(campFetu_82_40) Campylobacter hominis ATCC BAA-381 (20083) Campylobacter jejuni
RM1221 (campJeju_RM1221) Campylobacter jejuni subsp. doylei 269.97 (17163)
Campylobacter jejuni subsp. jejuni 81-176 (campJeju_81_176) Campylobacter jejuni
subsp. jejuni 81116 (17953) Campylobacter jejuni subsp. jejuni NCTC 11168
(campJeju) Canary 15 Jan-2014 (SCA1/serCan1) (serCan1) Candidatus Blochmannia
floridanus (blocFlor) Candidatus Blochmannia pennsylvanicus str. BPEN (13875)
Candidatus Carsonella ruddii PV (candCars_RUDDII) Candidatus Desulforudis
audaxviator MP104C (21047) Candidatus Korarchaeum cryptofilum OPF8 (16525)
Candidatus Methanoregula boonei 6A8 (methBoon1) Candidatus Pelagibacter ubique
HTCC1062 (candPela_UBIQUE_HTCC1) Candidatus Protochlamydia amoebophila UWE25
(paraSp_UWE25) Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
(16841) Candidatus Sulcia muelleri GWSS (19617) Candidatus Vesicomyosocius
okutanii HA (18267) Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) (eleEdw1)
Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) (chrAsi1) Capsella rubella JGI
annotation v1.0 on assembly v1 Capsella rubella JGI v1.0 Capsicum annuum Pepper
Genome v2.0 Carboxydothermus hydrogenoformans Z-2901 (carbHydr_Z_2901) Carica
papaya Hawaii Agriculture Research Center Carica papaya JGI ASGPB0.4 Cat Dec.
2008 (NHGRI/GTB V17e/felCat4) (felCat4) Cat Mar. 2006 (Broad/felCat3) (felCat3)
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) (felCat8) Cat Nov. 2017
(Felis_catus_9.0/felCat9) (felCat9) Cat Sep. 2011 (ICGSC Felis_catus
6.2/felCat5) (felCat5) Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1)
Caulobacter crescentus CB15 (caulCres) Caulobacter sp. K31 (16306) Cenchrus
americanus v1.0 CentromereY 2013 GrCh38 (centromeres1) Chenopodium quinoa JGI
v1.0 Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) (galGal5) Chicken Feb. 2004
(WUGSC 1.0/galGal2) (galGal2) Chicken Mar. 2018 (GRCg6a/galGal6) (galGal6)
Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) Chicken Nov. 2011 (ICGSC
Gallus_gallus-4.0/galGal4) (galGal4) Chicken Oct. 2021
(bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ) (GCF_016700215.2) Chimp Feb. 2011
(CSAC 2.1.4/panTro4) (panTro4) Chimp Jan. 2018 (Clint_PTRv2/panTro6) (panTro6)
Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) Chimp May 2016 (Pan_tro
3.0/panTro5) (panTro5) Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1) Chimp Oct.
2010 (CGSC 2.1.3/panTro3) (panTro3) Chinchilla May 2012 (ChiLan1.0/chiLan1)
(chiLan1) Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) (allSin1) Chinese
hamster Aug. 2011 (CHO K1 cell line/criGriChoV1) (criGriChoV1) Chinese hamster
Jul. 2013 (C_griseus_v1.0/criGri1) (criGri1) Chinese hamster Jun. 2017
(CHOK1S_HZDv1/criGriChoV2) (criGriChoV2) Chinese pangolin Aug 2014
(M_pentadactyla-1.1.1/manPen1) (manPen1) Chinese softshell turtle Oct 2011
(PelSin_1.0/pelSin1) (pelSin1) Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1)
(tupChi1) Chlamydia muridarum Nigg (229) Chlamydia trachomatis 434/Bu (28583)
Chlamydia trachomatis A/HAR-13 (13885) Chlamydia trachomatis D/UW-3/CX
(chlaTrac) Chlamydia trachomatis L2b/UCH-1/proctitis (28585) Chlamydomonas
reinhardtii JGI v5.0 assembly, annot v5.3.1 based on Augustus u11.6
Chlamydomonas reinhardtii JGI v5.5 Chlamydophila abortus S26/3 (355)
Chlamydophila caviae GPIC (228) Chlamydophila felis Fe/C-56 (370) Chlamydophila
pneumoniae AR39 (247) Chlamydophila pneumoniae CWL029 (chlaPneu_CWL029)
Chlamydophila pneumoniae J138 (257) Chlamydophila pneumoniae TW-183 (420)
Chlorobium chlorochromatii CaD3 (chloChlo_CAD3) Chlorobium phaeobacteroides DSM
266 (12609) Chlorobium tepidum TLS (chloTepi_TLS) Chloroflexus aurantiacus
J-10-fl (59) Chromobacterium violaceum ATCC 12472 (chroViol) Chromohalobacter
salexigens DSM 3043 (chroSale_DSM3043) Chuck-will's-widow Jun 2014
(ASM70074v1/capCar1) (capCar1) Cicer arietinum LIS v1.0 Citrobacter koseri ATCC
BAA-895 (12716) Citrullus lanatus Cucurbit Genomics Database Citrullus lanatus
Cucurbit Genomics Database v1.0 Citrus clementina JGI v1.0 Citrus sinensis JGI
v1 assembly and v1.0 annotation Clavibacter michiganensis subsp. michiganensis
NCPPB 382 (clavMich_NCPPB_382) Clavibacter michiganensis subsp. sepedonicus
(184) Clostridium acetobutylicum ATCC 824 (77) Clostridium beijerinckii NCIMB
8052 (12637) Clostridium botulinum A str. ATCC 19397 (19517) Clostridium
botulinum A str. ATCC 3502 (193) Clostridium botulinum A str. Hall (19521)
Clostridium botulinum A3 str. Loch Maree (28507) Clostridium botulinum B1 str.
Okra (28505) Clostridium botulinum F str. Langeland (19519) Clostridium
difficile 630 (78) Clostridium kluyveri DSM 555 (19065) Clostridium novyi NT
(16820) Clostridium perfringens ATCC 13124 (304) Clostridium perfringens SM101
(12521) Clostridium perfringens str. 13 (79) Clostridium phytofermentans ISDg
(16184) Clostridium tetani E88 (81) Clostridium thermocellum ATCC 27405 (314)
Coelacanth Aug. 2011 (Broad/latCha1) (latCha1) Coffea canephora Coffee Genome
Hub v1 Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) (ficAlb2) Colwellia
psychrerythraea 34H (colwPsyc_34H) Common cuckoo Jun 2014 (ASM70932v1/cucCan1)
(cucCan1) Corchorus olitorius GenBank v1.0 Corynebacterium diphtheriae NCTC
13129 (87) Corynebacterium efficiens YS-314 (coryEffi_YS_314) Corynebacterium
glutamicum ATCC 13032 (13760) Corynebacterium glutamicum ATCC 13032 (307)
Corynebacterium glutamicum R (19193) Corynebacterium jeikeium K411 (13967) Cow
Apr. 2009 (Baylor Btau_4.2/bosTau5) (bosTau5) Cow Apr. 2018 (ARS-UCD1.2/bosTau9)
(bosTau9) Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3) Cow Aug. 2009 (UMD3.1)
(bosTauMd3) Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) (bosTau8) Cow Mar. 2005
(Baylor 2.0/bosTau2) (bosTau2) Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6)
(bosTau6) Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) Cow Oct. 2011 (Baylor
Btau_4.6.1/bosTau7) (bosTau7) Coxiella burnetii Dugway 5J108-111 (16721)
Coxiella burnetii RSA 331 (16791) Coxiella burnetii RSA 493 (coxiBurn)
Crab-eating macaque Jun. 2013 (Macaca_fascicularis_5.0/macFas5) (macFas5)
Crested ibis Jun 2014 (ASM70822v1/nipNip1) (nipNip1) Crowned crain Jun 2014
(ASM70989v1/balPav1) (balPav1) Cuckoo roller May 2014 (ASM69178v1/lepDis1)
(lepDis1) Cucumis melo Melonomics v3.5 Cucumis sativus L. JGI v1.0 Cytophaga
hutchinsonii ATCC 33406 (cytoHutc_ATCC33406) D. albomicans 21 May 2012
(DroAlb_1.0/droAlb1) (droAlb1) D. ananassae Aug. 2005 (Agencourt prelim/droAna2)
(droAna2) D. ananassae Feb. 2006 (droAna3) D. ananassae July 2004 (TIGR/droAna1)
(droAna1) D. biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (droBia2) D. bipectinata
04 Mar 2013 (Dbip_2.0/droBip2) (droBip2) D. elegans 04 Mar 2013
(Dele_2.0/droEle2) (droEle2) D. erecta Aug. 2005 (Agencourt prelim/droEre1)
(droEre1) D. erecta Feb. 2006 (droEre2) D. eugracilis 04 Mar 2013
(Deug_2.0/droEug2) (droEug2) D. ficusphila 04 Mar 2013 (Dfic_2.0/droFic2)
(droFic2) D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) D.
grimshawi Feb. 2006 (droGri2) D. kikkawai 04 Mar 2013 (Dkik_2.0/droKik2)
(droKik2) D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) D. melanogaster Apr.
2006 (BDGP R5/dm3) (dm3) D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1
MT/dm6) (dm6) D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1) D. miranda 19 Apr
2013 (DroMir_2.2/droMir2) (droMir2) D. mojavensis Aug. 2004 (Agencourt
prelim/droMoj1) (droMoj1) D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2)
(droMoj2) D. mojavensis Feb. 2006 (droMoj3) D. persimilis Oct. 2005
(Broad/droPer1) (droPer1) D. pseudoobscura (dp4) (dp4) D. pseudoobscura 11 Apr
2013 (Dpse_3.0/droPse3) (droPse3) D. pseudoobscura Aug. 2003 (Baylor
freeze1/dp2) (dp2) D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) D.
rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (droRho2) D. sechellia Oct. 2005
(Broad/droSec1) (droSec1) D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1)
(droSim1) D. suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (droSuz1) D. takahashii
04 Mar 2013 (Dtak_2.0/droTak2) (droTak2) D. virilis Aug. 2005 (Agencourt
prelim/droVir2) (droVir2) D. virilis Feb. 2006 (droVir3) D. virilis July 2004
(Agencourt prelim/droVir1) (droVir1) D. willistoni 03 Aug 2006
(dwil_caf1/droWil2) (droWil2) D. willistoni Feb. 2006 (droWil1) D. yakuba 27 Jun
2006 (dyak_caf1/droYak3) (droYak3) D. yakuba Apr. 2004 (WUGSC 1.0/droYak1)
(droYak1) D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) Dalmatian pelican
May 2014 (ASM68737v1/pelCri1) (pelCri1) Daucus carota JGI v2.0 David's myotis
(bat) Aug 2012 (ASM32734v1/myoDav1) (myoDav1) Dechloromonas aromatica RCB
(dechArom_RCB) Deer Tick (Ixodes scapularis) (IscaW1) Dehalococcoides
ethenogenes 195 (dehaEthe_195) Dehalococcoides sp. BAV1 (15770) Dehalococcoides
sp. CBDB1 (15604) Deinococcus geothermalis DSM 11300 (deinGeot_DSM11300)
Deinococcus radiodurans R1 (deinRadi) Delftia acidovorans SPH-1 (17413)
Desulfitobacterium hafniense Y51 (desuHafn_Y51) Desulfococcus oleovorans Hxd3
(18007) Desulfotalea psychrophila LSv54 (desuPsyc_LSV54) Desulfotomaculum
reducens MI-1 (desuRedu_MI_1) Desulfovibrio desulfuricans G20 (329)
Desulfovibrio vulgaris subsp. vulgaris DP4 (17227) Desulfovibrio vulgaris subsp.
vulgaris str. Hildenborough (desuVulg_HILDENBOROUG) Dichelobacter nodosus
VCS1703A (dichNodo_VCS1703A) Dinoroseobacter shibae DFL 12 (17417) Dog July 2004
(Broad/canFam1) (canFam1) Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) (canFam4) Dog
May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1) Dog May 2005
(Broad/canFam2) (canFam2) Dog May 2019 (UMICH_Zoey_3.1/canFam5) (canFam5) Dog
Oct. 2020 (Dog10K_Boxer_Tasha/canFam6) (canFam6) Dolphin Feb. 2008
(Broad/turTru1) (turTru1) Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) (turTru2)
Domestic goat May 2012 (CHIR_1.0/capHir1) (capHir1) Downy woodpecker Jun 2014
(ASM69900v1/picPub1) (picPub1) Ebola virus 49 sequences: 5 Ebola, 2 Marburg
strains (eboVir2) Ebola virus Aug. 2014 (46 strains eboVir1/eboVir1) (eboVir1)
Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3) (eboVir3) Ecoref Feb.
2013 (ecoRef3/ecoRef3) (ecoRef3) Ecoref Feb. 2013 (ecoRef4/ecoRef4) (ecoRef4)
Ecoref Jan. 2013 (ecoRef1/ecoRef1) (ecoRef1) Ecoref Jan. 2013 (ecoRef2/ecoRef2)
(ecoRef2) Ehrlichia canis str. Jake (10694) Ehrlichia chaffeensis str. Arkansas
(325) Ehrlichia ruminantium str. Gardel (13356) Ehrlichia ruminantium str.
Welgevonden (13355) Ehrlichia ruminantium str. Welgevonden
(ehrlRumi_WELGEVONDEN) Elaeis guineensis EG5.1 Elaeis guineensis NCBI Genome
v1.0 Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2) Elephant Jul. 2009
(Broad/loxAfr3) (loxAfr3) Elephant May 2005 (Broad/loxAfr1) (loxAfr1) Elephant
shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) (calMil1) Emperor penguin 06
Jun 2014 (ASM69914v1/aptFor1) (aptFor1) Enterobacter sakazakii ATCC BAA-894
(12720) Enterobacter sp. 638 (ente638) Enterococcus faecalis V583
(enteFaec_V583) Erythranthe guttata JGI v2.0 Erythrobacter litoralis HTCC2594
(erytLito_HTCC2594) Escherichia coli 536 (16235) Escherichia coli APEC O1
(eschColi_APEC_O1) Escherichia coli C str. ATCC 8739 (18083) Escherichia coli
CFT073 (eschColi_CFT073) Escherichia coli DH10B (20079) Escherichia coli E24377A
(13960) Escherichia coli EC4115 (eschColi_EC4115) Escherichia coli HS (13959)
Escherichia coli K12 (eschColi_K12) Escherichia coli O157:H7 EDL933 (259)
Escherichia coli O157:H7 str. Sakai (eschColi_O157H7) Escherichia coli SECEC
SMS-3-5 (19469) Escherichia coli TW14359 (eschColi_TW14359) Escherichia coli
UTI89 (16259) Escherichia coli W3110 (16351) Euarchontoglires Apr. 24. 2006
(UCSC Recon/euaGli13) (euaGli13) Eucalyptus grandis JGI assembly v1.0,
annotation v1.1 Eucalyptus grandis JGI v2.0 European sea bass Apr 2014
(seabass_V1.0/dicLab1) (dicLab1) Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13)
(eutHer13) Evosim Feb. 2013 (evoSim1/evoSim1) (evoSim1) Ferret Apr. 2011
(MusPutFur1.0/musFur1) (musFur1) Fervidobacterium nodosum Rt17-B1 (16719)
Finegoldia magna ATCC 29328 (18981) Fission Yeast (S. pombe)
(Schizosaccharomyces_pombe_1.1) Flag rockfish 22 Oct-2013 (SRub1.0/sebRub1)
(sebRub1) Flavobacterium johnsoniae UW101 (flavJohn_UW101) Flavobacterium
psychrophilum JIP02/86 (19979) Foshan strain genomic contigs sequences, AaloF1
assembly. Fragaria vesca JGI v1.1 Fragaria vesca Strawberry Genome 1.0
Francisella philomiragia subsp. philomiragia ATCC 25017 (27853) Francisella
tularensis subsp. holarctica (16421) Francisella tularensis subsp. holarctica
FTA (20197) Francisella tularensis subsp. holarctica OSU18 (17265) Francisella
tularensis subsp. novicida U112 (16088) Francisella tularensis subsp. tularensis
FSC198 (17375) Francisella tularensis subsp. tularensis SCHU S4
(franTula_TULARENSIS) Francisella tularensis subsp. tularensis WY96-3418 (18459)
Frankia alni ACN14a (17403) Frankia sp. CcI3 (franCcI3) Frankia sp. EAN1pec
(13915) Fugu Aug. 2002 (JGI 3.0/fr1) (fr1) Fugu Oct. 2004 (JGI 4.0/fr2) (fr2)
Fugu Oct. 2011 (FUGU5/fr3) (fr3) Fusobacterium nucleatum subsp. nucleatum ATCC
25586 (fusoNucl) GRCh37.p2 Aug. 2009 (GRCh37.p2/hg19Patch2) (hg19Patch2)
GRCh38.p2 Dec 2014 (hg38Patch2) Garter snake Jun. 2015
(Thamnophis_sirtalis-6.0/thaSir1) (thaSir1) Geobacillus kaustophilus HTA426
(geobKaus_HTA426) Geobacillus thermodenitrificans NG80-2 (geobTher_NG80_2)
Geobacter metallireducens GS-15 (geobMeta_GS15) Geobacter sulfurreducens PCA
(geobSulf) Geobacter uraniireducens Rf4 (geobUran_RF4) Gharial APR 2009
(preliminary/gavGan0) (gavGan0) Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1)
(nomLeu1) Gibbon Jun. 2011 (GGSC Nleu1.1/nomLeu2) (nomLeu2) Gibbon Oct. 2012
(GGSC Nleu3.0/nomLeu3) (nomLeu3) Glires Apr. 24. 2006 (UCSC Recon/gliRes13)
(gliRes13) Gloeobacter violaceus PCC 7421 (gloeViol) Gluconacetobacter
diazotrophicus PAl 5 (377) Gluconobacter oxydans 621H (glucOxyd_621H) Glycine
max JGI Glyma1.1 annotation of the chromosome-based Glyma1 assembly Glycine max
JGI Wm82.a2.v1 Golden eagle May 2014 (AquilaChrysaetos1/aquChr1) (aquChr1)
Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) (aquChr2) Golden hamster Mar 2013
(MesAur1.0/mesAur1) (mesAur1) Golden snub-nosed monkey Oct. 2014
(Rrox_v1/rhiRox1) (rhiRox1) Golden-collared manakin May 2014
(ASM69201v1/manVit1) (manVit1) Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2)
Gorilla Aug. 2019 (Kamilah_GGO_v0/gorGor6) (gorGor6) Gorilla Dec 2014
(gorGor4.1/gorGor4) (gorGor4) Gorilla Mar. 2016 (GSMRT3/gorGor5) (gorGor5)
Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) Gorilla Oct. 2008 (Sanger
0.1/gorGor1) (gorGor1) Gossypium raimondii JGI annotation v2.1 on assembly v2.0
Gossypium raimondii JGI v2.1 Gramella forsetii KT0803 (gramFors_KT0803)
Granulibacter bethesdensis CGDNIH1 (granBeth_CGDNIH1) Grch37.p10 Sep. 2012
(GRCh37.p10/hg19Patch10) (hg19Patch10) Grch37.p5 Jun. 2011
(GRCh37.p5/hg19Patch5) (hg19Patch5) Grch37.p9 Jul. 2012 (GRCh37.p9/hg19Patch9)
(hg19Patch9) Grcm38.p1 Aug. 2012 (GRCm38.p1/mm10Patch1) (mm10Patch1) Great
cormorant Jun 2014 (ASM70892v1/phaCar1) (phaCar1) Greater horseshoe bat Sep.
2013 (ASM46549v1/rhiFer1) (rhiFer1) Green monkey 25 Mar-2014 (Chlorocebus_sabeus
1.1/chlSab2) (chlSab2) Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) (cheMyd1)
Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) Guppy Apr. 2014
(Guppy_female_1.0/poeRet1) (poeRet1) H. contortus Dec. 2009 (WormBase
WS210/haeCon1) (haeCon1) Haemophilus ducreyi 35000HP (38) Haemophilus influenzae
86-028NP (11752) Haemophilus influenzae PittEE (16400) Haemophilus influenzae
PittGG (16401) Haemophilus influenzae Rd KW20 (haemInfl_KW20) Haemophilus somnus
129PT (haemSomn_129PT) Haemophilus somnus 2336 (388) Hahella chejuensis KCTC
2396 (haheChej_KCTC_2396) Haloarcula marismortui ATCC 43049 (halMar1)
Halobacterium salinarum R1 (106) Halobacterium sp. NRC-1 (haloHalo1)
Haloquadratum walsbyi DSM 16790 (haloWals1) Halorhodospira halophila SL1
(haloHalo_SL1) Hawaiian monk seal Jun. 2017 (ASM220157v1/neoSch1) (neoSch1) Head
Louse (Pediculus humanus) (PhumU1) Hedgehog June 2006 (Broad/eriEur1) (eriEur1)
Hedgehog May 2012 (EriEur2.0/eriEur2) (eriEur2) Helicobacter acinonychis str.
Sheeba (heliAcin_SHEEBA) Helicobacter hepaticus ATCC 51449 (heliHepa)
Helicobacter pylori 26695 (heliPylo_26695) Helicobacter pylori HPAG1
(heliPylo_HPAG1) Helicobacter pylori J99 (heliPylo_J99) Heliobacterium
modesticaldum Ice1 (13427) Herminiimonas arsenicoxydans (hermArse) Herpetosiphon
aurantiacus ATCC 23779 (16523) Hevea brasiliensis NCBI Genomes v1 Hg19 lgg
inversion Mar 2013 (1/hg19LggInv) (hg19LggInv) Hlaref Apr. 2012
(hlaRefV1/hlaRef1) (hlaRef1) Hlaref Apr. 2012 (hlaRefV2/hlaRef2) (hlaRef2)
Hlaref Apr. 2012 (hlaRefV3/hlaRef3) (hlaRef3) Hoatzin May 2014
(ASM69207v1/opiHoa1) (opiHoa1) Hominidae Apr. 24. 2006 (UCSC Recon/homIni13)
(homIni13) Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14) Homo Sapiens
(GRCh38) Transcriptome + ERCC Homo sapiens (hg19 with mtDNA replaced with rCRS)
(Homo_sapiens_nuHg19_mtrCRS) Homo sapiens b37 (hg_g1k_v37) Homo sapiens
hydatidiform mole assembly chm1 June 2013 (1/CHM1) (CHM1) Honeybee (Apis
mellifera): apiMel3 (apiMel3) Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1)
(corCor1) Hordeum vulgare Ensembl Genomes ASM32608v1 Hordeum vulgare IBC PGSB v2
Hordeum vulgare MIPS Horse Jan. 2007 (Broad/equCab1) (equCab1) Horse Jan. 2018
(EquCab3.0/equCab3) (equCab3) Horse Sep. 2007 (Broad/equCab2) (equCab2) Houbara
bustard Jun 2014 (ASM69519v1/chlUnd1) (chlUnd1) Human Apr. 2003 (NCBI33/hg15)
(hg15) Human CHM13 2.0 (T2T Consortium) Jan. 2022 Human Dec. 2013 (GRCh38/hg38)
(hg38) Human Feb. 2009 (GRCh37/hg19) (hg19) Human Jan. 2021 isolate CHM13 (T2T
Consortium) female Human Jan. 2022 (T2T CHM13v2.0/hs1) (hs1) Human July 2003
(NCBI34/hg16) (hg16) Human Mar. 2006 (NCBI36/hg18) (hg18) Human May 2004
(NCBI35/hg17) (hg17) Human herpesvirus 1 (15217) Human repeats Nov. 2012
(1/repeats2) (repeats2) Hydra magnipapillata str. 105 (Hydra_JCVI) Hyperthermus
butylicus DSM 5456 (hypeButy1) Hyphomonas neptunium ATCC 15444
(hyphNept_ATCC15444) Idiomarina loihiensis L2TR (idioLoih_L2TR) Ignicoccus
hospitalis KIN4/I (13914) Indian false vampire Sep. 2013 (ASM46534v1/megLyr1)
(megLyr1) Influenza A virus (A/seal/Mass/1-SC35M/1980(H7N7)) J. Craig Venter
Sep. 2007 (HuRef/venter1) (venter1) Jannaschia sp. CCS1 (jannCCS1)
Janthinobacterium sp. Marseille (16549) Japanese eel 18 Mar-2014
(japanese_eel_genome_v1_25_oct_2011_japonica_c401b400k25m200_sspacepremiumk3a02n24_extra.final.scaffolds/angJap1)
(angJap1) Japanese quail 26 Jul-2013 (Coja_1.0/cotJap1) (cotJap1) Kangaroo rat
Jul. 2008 (Broad/dipOrd1) (dipOrd1) Killdeer Aug 2014 (ASM70802v2/chaVoc2)
(chaVoc2) Killdeer Jun 2014 (ASM70802v1/chaVoc1) (chaVoc1) Killer whale Jan 2013
(Oorc_1.1/orcOrc1) (orcOrc1) Kineococcus radiotolerans SRS30216 (10689) Kirref
Apr. 2011 (kirRef/kirRef) (kirRef) Kirrefv2 Apr. 2011 (kirRefV2/kirRefV2)
(kirRefV2) Kirrefv3 Apr. 2011 (kirRefV3/kirRefV3) (kirRefV3) Kirrefv4 Apr. 2011
(kirRefV4/kirRefV4) (kirRefV4) Kirrefv5 Apr. 2011 (kirRefV5/kirRefV5) (kirRefV5)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (31) Korean Man
(Homo_sapiens_AK1) Lactobacillus acidophilus NCFM (82) Lactobacillus brevis ATCC
367 (404) Lactobacillus casei ATCC 334 (402) Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842 (16871) Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365 (403) Lactobacillus gasseri ATCC 33323 (84) Lactobacillus helveticus DPC
4571 (17811) Lactobacillus johnsonii NCC 533 (9638) Lactobacillus plantarum
WCFS1 (lactPlan) Lactobacillus reuteri F275 (15766) Lactobacillus sakei subsp.
sakei 23K (13435) Lactobacillus salivarius UCC118 (lactSali_UCC118) Lactococcus
lactis subsp. cremoris MG1363 (18797) Lactococcus lactis subsp. cremoris SK11
(401) Lactococcus lactis subsp. lactis Il1403 (lactLact) Lamprey Dec. 2017
(Pmar_germline 1.0/petMar3) (petMar3) Lamprey Mar. 2007 (WUGSC 3.0/petMar1)
(petMar1) Lamprey Sep. 2010 (WUGSC 7.0/petMar2) (petMar2) Lancelet Apr. 2008
(JGI v2.0/braFlo2) (braFlo2) Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1)
Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13) Lawsonia
intracellularis PHE/MN1-00 (lawsIntr_PHE_MN1_00) Legionella pneumophila str.
Corby (17491) Legionella pneumophila str. Lens (13126) Legionella pneumophila
str. Paris (13127) Legionella pneumophila subsp. pneumophila str. Philadelphia 1
(legiPneu_PHILADELPHIA) Leifsonia xyli subsp. xyli str. CTCB07
(leifXyli_XYLI_CTCB0) Leishmania major 2005 (lMaj5) Leptospira borgpetersenii
serovar Hardjo-bovis JB197 (16148) Leptospira borgpetersenii serovar
Hardjo-bovis L550 (16146) Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130 (10687) Leptospira interrogans serovar Lai str. 56601 (leptInte)
Leptothrix cholodnii SP-6 (20039) Lesser Egyptian jerboa May 2012
(JacJac1.0/jacJac1) (jacJac1) Leuconostoc citreum KM20 (16062) Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293 (leucMese_ATCC8293) Limpet Jul.
2013 (lotGig0/lotGig0) (lotGig0) Listeria innocua Clip11262 (listInno) Listeria
monocytogenes EGD-e (276) Listeria monocytogenes str. 4b F2365 (85) Listeria
welshimeri serovar 6b str. SLCC5334 (13443) Little egret May 2014
(ASM68718v1/egrGar1) (egrGar1) Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) Lizard
May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) Lotus japonicus Kazusa 2.5
Lysinibacillus sphaericus C3-41 (19619) M. domestica 22 Apr 2013
(Musca_domestica-2.0.2/musDom2) (musDom2) M. hapla Sep. 2008 (M. hapla VW9
WS210/melHap1) (melHap1) M. incognita Feb. 2008 (M. incognita WS210/melInc1)
(melInc1) MMTV Nov. 2009 (MMTV/mmtv) (mmtv) Magnetococcus sp. MC-1 (magnMC1)
Magnetospirillum magneticum AMB-1 (magnMagn_AMB_1) Maize (Zea mays)
(Zea_mays_B73_RefGen_v2) Malayan flying lemur Jun. 2014
(G_variegatus-3.0.2/galVar1) (galVar1) Mallard duck Apr 2013
(BGI_duck_1.0/anaPla1) (anaPla1) Malus domestica IASMA Malus domestica Penguin
Genomics v2 Manatee Oct. 2011 (Broad v1.0/triMan1) (triMan1) Manihot esculenta
Cassava4 Manihot esculenta JGI v6.1 Mannheimia succiniciproducens MBEL55E
(mannSucc_MBEL55E) Marburg virus Sep. 2014 (NC_024781.1/marVir1) (marVir1)
Marchantia polymorpha JGI v3.1 Maricaulis maris MCS10 (mariMari_MCS10)
Marinobacter aquaeolei VT8 (mariAqua_VT8) Marinomonas sp. MWYL1 (17445) Marmoset
June 2007 (WUGSC 2.0.2/calJac1) (calJac1) Marmoset March 2009 (WUGSC
3.2/calJac3) (calJac3) Marmoset May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)
(calJac4) Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1) Medaka Oct. 2005
(NIG/UT MEDAKA1/oryLat2) (oryLat2) Medicago truncatula JCVI 4.0 Medicago
truncatula JGI Mt4.0v1 Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1)
(geoFor1) Megabat Jul. 2008 (Broad/pteVam1) (pteVam1) Mesoplasma florum L1
(mesoFlor_L1) Mesorhizobium loti MAFF303099 (mesoLoti) Mesorhizobium sp. BNC1
(10690) Metallosphaera sedula DSM 5348 (metaSedu) Methanobrevibacter smithii
ATCC 35061 (methSmit1) Methanocaldococcus jannaschii DSM 2661 (methJann1)
Methanococcoides burtonii DSM 6242 (methBurt2) Methanococcus aeolicus Nankai-3
(methAeol1) Methanococcus maripaludis C5 (methMari_C5_1) Methanococcus
maripaludis C6 (19639) Methanococcus maripaludis C7 (methMari_C7) Methanococcus
maripaludis S2 (metMar1) Methanococcus vannielii SB (methVann1)
Methanocorpusculum labreanum Z (methLabrZ_1) Methanoculleus marisnigri JR1
(mculMari1) Methanopyrus kandleri AV19 (methKand1) Methanosaeta thermophila PT
(methTherPT1) Methanosarcina acetivorans C2A (metAce1) Methanosarcina barkeri
str. Fusaro (methBark1) Methanosarcina mazei Go1 (methMaze1) Methanosphaera
stadtmanae DSM 3091 (methStad1) Methanospirillum hungatei JF-1 (methHung1)
Methanothermobacter thermautotrophicus str. Delta H (methTher1) Methylibium
petroleiphilum PM1 (methPetr_PM1) Methylobacillus flagellatus KT (methFlag_KT)
Methylobacterium extorquens PA1 (18637) Methylobacterium radiotolerans JCM 2831
(18817) Methylobacterium sp. 4-46 (18809) Methylococcus capsulatus str. Bath
(methCaps_BATH) Mexican tetra (cavefish) Apr 2013
(Astyanax_mexicanus-1.0.2/astMex1) (astMex1) Mhcref Apr. 2011
(mhcRefnoNsV2/mhcRefnoNs2) (mhcRefnoNs2) Mhcref Jan. 2011 (mhcRefV1/mhcRef)
(mhcRef) Mhcref July 2011 (mhcRefnoNsV10/mhcRefnoNs10) (mhcRefnoNs10) Mhcref
July 2011 (mhcRefnoNsV11/mhcRefnoNs11) (mhcRefnoNs11) Mhcref July 2011
(mhcRefnoNsV12/mhcRefnoNs12) (mhcRefnoNs12) Mhcref July 2011
(mhcRefnoNsV13/mhcRefnoNs13) (mhcRefnoNs13) Mhcref July 2011
(mhcRefnoNsV14/mhcRefnoNs14) (mhcRefnoNs14) Mhcref July 2011
(mhcRefnoNsV15/mhcRefnoNs15) (mhcRefnoNs15) Mhcref July 2011
(mhcRefnoNsV16/mhcRefnoNs16) (mhcRefnoNs16) Mhcref July 2011
(mhcRefnoNsV17/mhcRefnoNs17) (mhcRefnoNs17) Mhcref July 2011
(mhcRefnoNsV5/mhcRefnoNs5) (mhcRefnoNs5) Mhcref July 2011
(mhcRefnoNsV6/mhcRefnoNs6) (mhcRefnoNs6) Mhcref July 2011
(mhcRefnoNsV7/mhcRefnoNs7) (mhcRefnoNs7) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs8) (mhcRefnoNs8) Mhcref July 2011
(mhcRefnoNsV8/mhcRefnoNs9) (mhcRefnoNs9) Mhcref June 2011
(mhcRefnoNsV1/mhcRefnoNs) (mhcRefnoNs) Mhcref June 2011
(mhcRefnoNsV3/mhcRefnoNs3) (mhcRefnoNs3) Mhcref June 2011
(mhcRefnoNsV4/mhcRefnoNs4) (mhcRefnoNs4) Mhcref Mar. 2012
(mhcRefnoNsV22/mhcRefnoNs22) (mhcRefnoNs22) Mhcref Mar. 2012
(mhcRefnoNsV23/mhcRefnoNs23) (mhcRefnoNs23) Mhcref Mar. 2012
(mhcRefnoNsV24/mhcRefnoNs24) (mhcRefnoNs24) Mhcref Oct. 2011
(mhcRefnoNsV18/mhcRefnoNs18) (mhcRefnoNs18) Mhcref Oct. 2011
(mhcRefnoNsV19/mhcRefnoNs19) (mhcRefnoNs19) Mhcref Oct. 2011
(mhcRefnoNsV20/mhcRefnoNs20) (mhcRefnoNs20) Mhcref Oct. 2011
(mhcRefnoNsV21/mhcRefnoNs21) (mhcRefnoNs21) Microbat Jul. 2010 (Broad Institute
Myoluc2.0/myoLuc2) (myoLuc2) Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1)
Microcystis aeruginosa NIES-843 (27835) Micromonas commoda JGI v3.0 Minke whale
Oct. 2013 (BalAcu1.0/balAcu1) (balAcu1) Mm10haps Dec. 2011 (Mouse
strains/mm10Strains1) (mm10Strains1) Monkeypox virus MPXV-M5312_HM12_Rivers
(MT903340.1/GCF_014621545.1) (mpxvRivers) Moorella thermoacetica ATCC 39073
(moorTher_ATCC39073) Mosquito (Aedes aegypti) (AaegL1) Mosquito (Anopheles
gambiae) (AgamP3) Mosquito (Culex quinquefasciatus) (CpipJ1) Mouse (Mus
Musculus): mm10 Full Mouse Aug. 2005 (NCBI35/mm7) (mm7) Mouse Feb. 2006
(NCBI36/mm8) (mm8) Mouse July 2007 (NCBI37/mm9) (mm9) Mouse Jun. 2020
(GRCm39/mm39) (mm39) Mouse May 2004 (mm5) Mouse lemur Jul. 2007 (Broad/micMur1)
(micMur1) Mouse lemur May 2015 (Mouse lemur/micMur2) (micMur2) Musa acuminata
Banana Genome v1.0 Musa acuminata Banana Genome v2.0 Musa acuminata
Genescope-Cirad Mycobacterium abscessus (15691) Mycobacterium avium 104 (88)
Mycobacterium avium subsp. paratuberculosis K-10 (91) Mycobacterium bovis
AF2122/97 (89) Mycobacterium bovis BCG str. Pasteur 1173P2 (18059) Mycobacterium
gilvum PYR-GCK (15760) Mycobacterium leprae TN (90) Mycobacterium smegmatis str.
MC2 155 (92) Mycobacterium sp. JLS (16079) Mycobacterium sp. KMS (16081)
Mycobacterium sp. MCS (15762) Mycobacterium tuberculosis CDC1551 (223)
Mycobacterium tuberculosis F11 (15642) Mycobacterium tuberculosis H37Ra (18883)
Mycobacterium tuberculosis H37Rv (mycoTube_H37RV) Mycobacterium ulcerans Agy99
(16230) Mycobacterium vanbaalenii PYR-1 (15761) Mycoplasma agalactiae PG2
(16095) Mycoplasma capricolum subsp. capricolum ATCC 27343 (16208) Mycoplasma
gallisepticum R (409) Mycoplasma genitalium G37 (mycoGeni) Mycoplasma
hyopneumoniae 232 (13120) Mycoplasma hyopneumoniae 7448 (10639) Mycoplasma
hyopneumoniae J (10675) Mycoplasma mobile 163K (10697) Mycoplasma mycoides
subsp. mycoides SC str. PG1 (10616) Mycoplasma penetrans HF-2 (176) Mycoplasma
pneumoniae M129 (99) Mycoplasma pulmonis UAB CTIP (100) Mycoplasma synoviae 53
(10676) Myxococcus xanthus DK 1622 (myxoXant_DK_1622) Naked mole-rat Jan. 2012
(Broad HetGla_female_1.0/hetGla2) (hetGla2) Naked mole-rat Jul. 2011 (BGI
HetGla_1.0/hetGla1) (hetGla1) Nanoarchaeum equitans Kin4-M (nanEqu1)
Natronomonas pharaonis DSM 2160 (natrPhar1) Neisseria gonorrhoeae FA 1090
(neisGono_FA1090_1) Neisseria meningitidis 053442 (16393) Neisseria meningitidis
FAM18 (neisMeni_FAM18_1) Neisseria meningitidis MC58 (neisMeni_MC58_1) Neisseria
meningitidis Z2491 (neisMeni_Z2491_1) Nelumbo nucifera LOTUS-DB v1.1
Neorickettsia sennetsu str. Miyayama (neorSenn_MIYAYAMA) Nile tilapia Jan. 2011
(Broad oreNil1.0/oreNil1) (oreNil1) Nile tilapia Jan. 2011 (Broad
oreNil1.1/oreNil2) (oreNil2) Nitratiruptor sp. SB155-2 (18963) Nitrobacter
hamburgensis X14 (13473) Nitrobacter winogradskyi Nb-255 (nitrWino_NB_255)
Nitrosococcus oceani ATCC 19707 (nitrOcea_ATCC19707) Nitrosomonas europaea ATCC
19718 (nitrEuro) Nitrosomonas eutropha C91 (13913) Nitrosopumilus maritimus SCM1
(19265) Nitrosospira multiformis ATCC 25196 (nitrMult_ATCC25196) Nocardia
farcinica IFM 10152 (nocaFarc_IFM10152) Nocardioides sp. JS614 (nocaJS61)
Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13) Northern carmine
bee-eater May 2014 (ASM69184v1/merNub1) (merNub1) Northern fulmar May 2014
(ASM69083v1/fulGla1) (fulGla1) Northern pike Jul 2014 (EsoLuc1.0/esoLuc1)
(esoLuc1) Nostoc sp. PCC 7120 (nostSp) Notyet Oct. 2011 (notYet1/calMil0)
(calMil0) Novosphingobium aromaticivorans DSM 12444 (novoArom_DSM12444)
Oceanobacillus iheyensis HTE831 (oceaIhey) Ochrobactrum anthropi ATCC 49188
(19485) Oenococcus oeni PSU-1 (oenoOeni_PSU_1) Oikopleura dioica (od01) Onion
yellows phytoplasma OY-M (onioYell_PHYTOPLASMA) Opossum Jan. 2006
(Broad/monDom4) (monDom4) Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1)
Opossum Oct. 2006 (Broad/monDom5) (monDom5) Orangutan Jan. 2018
(Susie_PABv2/ponAbe3) (ponAbe3) Orangutan July 2007 (WUGSC 2.0.2/ponAbe2)
(ponAbe2) Orientia tsutsugamushi str. Boryong (orieTsut_BORYONG) Oropetium
thomaeum JGI v1.0 Oryza brachyantha Ensembl Plants v1.4b Oryza sativa ssp.
indica 9311_BGF_2005 Oryza sativa ssp. indica MBKBASE v1.0 Oryza sativa ssp.
japonica JGI v7.0 Oryza sativa ssp. japonica MSU RGAP 7 Ostreococcus lucimarinus
JGI 2.0 Ostreococcus lucimarinus JGI v2.0 assembly and annotation Ostrich 06
Jun-2014 (ASM69896v1/strCam1) (strCam1) P. falciparum Plasmodium falciparum
(?/falciparum) (falciparum) P. pacificus Dec. 2008 (WUGSC 5.0.1/priPac2)
(priPac2) P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) Pacific walrus
Jan 2013 (Oros_1.0/odoRosDiv1) (odoRosDiv1) Painted turtle Dec. 2011
(v3.0.1/chrPic1) (chrPic1) Painted turtle Mar. 2014 (v3.0.3/chrPic2) (chrPic2)
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) Parabacteroides distasonis
ATCC 8503 (13485) Paracoccus denitrificans PD1222 (paraDeni_PD1222) Parnell's
mustached bat Sep. 2013 (ASM46540v1/ptePar1) (ptePar1) Parrot Jan. 2013
(AV1/amaVit1) (amaVit1) Parvibaculum lavamentivorans DS-1 (17639) Pasteurella
multocida subsp. multocida str. Pm70 (pastMult) Pectobacterium atrosepticum
SCRI1043 (erwiCaro_ATROSEPTICA) Pediococcus pentosaceus ATCC 25745
(pediPent_ATCC25745) Pelobacter carbinolicus DSM 2380 (peloCarb) Pelobacter
propionicus DSM 2379 (13384) Pelodictyon luteolum DSM 273 (peloLute_DSM273)
Pelotomaculum thermopropionicum SI (peloTher_SI) Peregrine falcon Feb 2013
(F_peregrinus_v1.0/falPer1) (falPer1) Petrotoga mobilis SJ95 (17679) Petunia
axillaris Sol Genomics v1.6.2 Phalaenopsis equestris Genomics v1.0
Photobacterium profundum SS9 (photProf_SS9) Photorhabdus luminescens subsp.
laumondii TTO1 (photLumi) Phyllostachys edulis NCGR v1.0 Physcomitrella patens
JGI assembly release v1.1 and COSMOSS annotation v1.6 Physcomitrella patens JGI
v3.3 Picrophilus torridus DSM 9790 (picrTorr1) Pig Aug. 2011 (SGSC
Sscrofa10.2/susScr3) (susScr3) Pig Feb. 2017 (Sscrofa11.1/susScr11) (susScr11)
Pig May 2010 (Sscrofa9.58) Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2)
Pika Jul. 2008 (Broad/ochPri2) (ochPri2) Pika May 2012 (OchPri3.0/ochPri3)
(ochPri3) Plasmodium falciparum 3d7 10 Sept 2014 (V12.0/plasFalc3D7V12)
(plasFalc3D7V12) Platypus Feb. 2007 (ASM227v2/ornAna2) (ornAna2) Platypus Mar.
2007 (WUGSC 5.0.1/ornAna1) (ornAna1) Polar bear 09 May-2014 (UrsMar_1.0/ursMar1)
(ursMar1) Polaromonas naphthalenivorans CJ2 (13418) Polaromonas sp. JS666
(polaJS66) Polynucleobacter sp. QLW-P1DMWA-1 (polyQLWP) Poplar (Populus
trichocarpa) (Ptrichocarpa_156) Populus trichocarpa JGI assembly release v3.0,
annotation v3.0 Populus trichocarpa JGI v3.1 Porphyromonas gingivalis W83
(porpGing_W83) Prairie deer mouse 03 Dec-2013 (Pman_1.0/perManBai1) (perManBai1)
Prairie vole Oct 2012 (MicOch1.0/micOch1) (micOch1) Primate Apr. 24. 2006 (UCSC
Recon/priMat13) (priMat13) Princess of Burundi May 2011 (NeoBri1.0/neoBri1)
(neoBri1) Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) (nasLar1)
Prochlorococcus marinus str. AS9601 (13548) Prochlorococcus marinus str. MIT
9211 (13551) Prochlorococcus marinus str. MIT 9215 (18633) Prochlorococcus
marinus str. MIT 9301 (15746) Prochlorococcus marinus str. MIT 9303 (13496)
Prochlorococcus marinus str. MIT 9312 (13910) Prochlorococcus marinus str. MIT
9313 (220) Prochlorococcus marinus str. MIT 9515 (13617) Prochlorococcus marinus
str. NATL1A (15660) Prochlorococcus marinus str. NATL2A (13911) Prochlorococcus
marinus subsp. marinus str. CCMP1375 (procMari_CCMP1375) Prochlorococcus marinus
subsp. pastoris str. CCMP1986 (213) Propionibacterium acnes KPA171202
(propAcne_KPA171202) Prosthecochloris vibrioformis DSM 265 (12607) Prunus
persica JGI release v1.0 Prunus persica JGI v2.1 Przewalski horse Jun 2014
(Burgud/equPrz1) (equPrz1) Pseudoalteromonas atlantica T6c (13454)
Pseudoalteromonas haloplanktis TAC125 (pseuHalo_TAC125) Pseudomonas aeruginosa
PA7 (16720) Pseudomonas aeruginosa PAO1 (pseuAeru) Pseudomonas aeruginosa
UCBPP-PA14 (386) Pseudomonas entomophila L48 (16800) Pseudomonas fluorescens
Pf-5 (327) Pseudomonas fluorescens PfO-1 (12) Pseudomonas mendocina ymp (17457)
Pseudomonas putida F1 (13909) Pseudomonas putida GB-1 (17629) Pseudomonas putida
KT2440 (267) Pseudomonas putida W619 (17053) Pseudomonas stutzeri A1501 (16817)
Pseudomonas syringae pv. phaseolicola 1448A (12416) Pseudomonas syringae pv.
syringae B728a (323) Pseudomonas syringae pv. tomato str. DC3000 (359)
Psychrobacter arcticus 273-4 (psycArct_273_4) Psychrobacter cryohalolentis K5
(13920) Psychrobacter sp. PRwf-1 (15759) Psychromonas ingrahamii 37
(psycIngr_37) Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) (punNye1) Purple
Sea Urchin (Strongylocentrotus purpuratus) v2.6 (Spur_v2.6) Pyrobaculum
aerophilum str. IM2 (pyrAer1) Pyrobaculum arsenaticum DSM 13514 (pyroArse1)
Pyrobaculum calidifontis JCM 11548 (pyroCali1) Pyrobaculum islandicum DSM 4184
(pyroIsla1) Pyrococcus abyssi GE5 (pyrAby1) Pyrococcus furiosus DSM 3638
(pyrFur2) Pyrococcus horikoshii OT3 (pyrHor1) Pyrus bretschneideri Pear Genome
Project v1.0 Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2) Rabbit May 2005
(Broad/oryCun1) (oryCun1) Ralstonia eutropha H16 (13603) Ralstonia eutropha
JMP134 (ralsEutr_JMP134) Ralstonia metallidurans CH34 (250) Ralstonia
solanacearum GMI1000 (ralsSola) Rat Jul. 2014 (RGSC 6.0/rn6) (rn6) Rat June 2003
(Baylor 3.1/rn3) (rn3) Rat Mar. 2012 (RGSC 5.0/rn5) (rn5) Rat Nov. 2004 (Baylor
3.4/rn4) (rn4) Rat Nov. 2020 (mRatBN7.2/rn7) (rn7) Red Flour Beetle (Tribolium
castaneum) (Tcas_3.0) Red crested turaco Jun 2014 (ASM70936v1/tauEry1) (tauEry1)
Red-legged seriema May 2014 (ASM69053v1/carCri1) (carCri1) Red-throated loon May
2014 (ASM69087v1/gavSte1) (gavSte1) Renibacterium salmoninarum ATCC 33209
(19227) RepBase Jun. 2012 (hg19/repBase0) (repBase0) RepBase Sep. 2012
(17.08/repBase1) (repBase1) Reston ebolavirus Aug. 2014 (NC_004161.1/resEbo1)
(resEbo1) Rhesus Feb. 2019 (Mmul_10/rheMac10) (rheMac10) Rhesus Jan. 2006 (MGSC
Merged 1.0/rheMac2) (rheMac2) Rhesus Nov. 2014 (UMD MacaM_Assembly_v7/rheMac7)
(rheMac7) Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) (rheMac8) Rhesus Oct. 2010
(BGI CR_1.0/rheMac3) (rheMac3) Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1)
(bucRhi1) Rhizobium etli CFN 42 (rhizEtli_CFN_42) Rhizobium leguminosarum bv.
viciae 3841 (344) Rhodobacter sphaeroides 2.4.1 (rhodSpha_2_4_1) Rhodobacter
sphaeroides ATCC 17025 (15755) Rhodobacter sphaeroides ATCC 17029 (15754)
Rhodococcus sp. RHA1 (rhodRHA1) Rhodoferax ferrireducens T118 (13908)
Rhodopirellula baltica SH 1 (pireSp) Rhodopseudomonas palustris BisA53 (15751)
Rhodopseudomonas palustris BisB18 (15750) Rhodopseudomonas palustris BisB5
(15749) Rhodopseudomonas palustris CGA009 (rhodPalu_CGA009) Rhodopseudomonas
palustris HaA2 (15747) Rhodospirillum rubrum ATCC 11170 (rhodRubr_ATCC11170)
Rice (Oryza sativa ssp. japonica var. Nipponbare)
(oryza_sativa_japonica_nipponbare_IRGSP4.0) Ricinus communis JCVI 1.0 Ricinus
communis JGI v0.1 Rickettsia akari str. Hartford (12953) Rickettsia bellii OSU
85-389 (17237) Rickettsia bellii RML369-C (rickBell_RML369_C) Rickettsia
canadensis str. McKiel (12952) Rickettsia conorii str. Malish 7 (42) Rickettsia
felis URRWXCal2 (13884) Rickettsia massiliae MTU5 (18271) Rickettsia prowazekii
str. Madrid E (43) Rickettsia rickettsii str. 'Sheila Smith' (9636) Rickettsia
rickettsii str. Iowa (19943) Rickettsia typhi str. Wilmington (10679) Rifleman
27 May 2014 (ASM69581v1/acaChl1) (acaChl1) Rock hyrax Jul. 2008 (Broad/proCap1)
(proCap1) Rock pigeon Dec 2017 (Cliv_2.1/colLiv2) Rock pigeon Feb 2013
(Cliv_1.0/colLiv1) (colLiv1) Rodent Apr. 24. 2006 (UCSC Recon/rodEnt13)
(rodEnt13) Roseiflexus castenholzii DSM 13941 (13462) Roseiflexus sp. RS-1
(16190) Roseobacter denitrificans OCh 114 (roseDeni_OCH_114) Rubrobacter
xylanophilus DSM 9941 (rubrXyla_DSM9941) S. cerevisae str. S288C
(Saccharomyces_cerevisiae_S288C_SGD2010) S. cerevisiae Apr. 2011
(SacCer_Apr2011/sacCer3) (sacCer3) S. cerevisiae June 2008 (SGD/sacCer2)
(sacCer2) S. cerevisiae Oct. 2003 (SGD/sacCer1) (sacCer1) S. lycopersicum
(Tomato) Feb 2019 (SL4.0) S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1)
S. purpuratus Feb. 2009 (BCM-HGSC Spur_v2.5/strPur3) (strPur3) S. purpuratus
Jun. 2011 (BCM-HGSC Spur_v3.1/strPur4) (strPur4) S. purpuratus Sep. 2006 (Baylor
2.1/strPur2) (strPur2) S.enterica_NC_016810.1 SARS coronavirus Apr. 2003
(GenBank Apr. 14 '03/sc1) (sc1) SARS-CoV-2 Jan. 2020 (NC_045512.2) (wuhCor1)
SARS-CoV-2 isolate Wuhan-Hu-1, complete genome (NC_045512) Saccharophagus
degradans 2-40 (saccDegr_2_40) Saccharopolyspora erythraea NRRL 2338
(saccEryt_NRRL_2338) Saccharum spontaneum v20190103 Saker falcon Feb 2013
(F_cherrug_v1.0/falChe1) (falChe1) Salinibacter ruber DSM 13855
(saliRube_DSM13855) Salinispora arenicola CNS-205 (17109) Salinispora tropica
CNB-440 (saliTrop_CNB_440) Salmonella enterica (NC_016810.1) Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- (13030) Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67 (9618) Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150 (salmEnte_PARATYPI_ATC) Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7 (27803) Salmonella enterica subsp.
enterica serovar Typhi str. CT18 (salmTyph) Salmonella enterica subsp. enterica
serovar Typhi str. Ty2 (salmTyph_TY2) Salmonella typhimurium LT2 (241) Saltwater
crocodile June 2011 (UCSC cPoro_v0.1c45/croPor0) (croPor0) Scarlet Macaw Jun
2013 (SMACv1.1/araMac1) (araMac1) Schrenkiella parvula Thellungiella v2.0
(TpV84) Sea hare Jul. 2013 (aplCal0/aplCal0) (aplCal0) Sea hare Sept. 2008
(Broad 2.0/aplCal1) (aplCal1) Selaginella moellendorffii JGI v1.0 Selaginella
moellendorffii NCBIr100 Serratia proteamaculans 568 (17459) Setaria italica JGI
8.3X chromosome-scale assembly release 2.0, annotation version 2.1 Setaria
italica JGI v2.2 Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) (oviAri3) Sheep Feb.
2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1) Sheep Nov. 2015 (Oar_v4.0/oviAri4)
(oviAri4) Sheepshead minnow Jul 2014 (C_variegatus-1.0/cypVar1) (cypVar1)
Shewanella amazonensis SB2B (shewAmaz) Shewanella baltica OS155 (shewBalt)
Shewanella baltica OS185 (17643) Shewanella baltica OS195 (13389) Shewanella
denitrificans OS217 (shewDeni) Shewanella frigidimarina NCIMB 400 (shewFrig)
Shewanella halifaxensis HAW-EB4 (20241) Shewanella loihica PV-4 (shewLoihPV4)
Shewanella oneidensis MR-1 (shewOnei) Shewanella pealeana ATCC 700345 (17415)
Shewanella putrefaciens CN-32 (shewPutrCN32) Shewanella sediminis HAW-EB3
(18789) Shewanella sp. ANA-3 (shewANA3) Shewanella sp. MR-4 (shewMR4) Shewanella
sp. MR-7 (shewMR7) Shewanella sp. W3-18-1 (shewW318) Shewanella woodyi ATCC
51908 (17455) Shigella boydii Sb227 (13146) Shigella dysenteriae Sd197 (13145)
Shigella flexneri 2a str. 2457T (408) Shigella flexneri 2a str. 301
(shigFlex_2A) Shigella flexneri 5 str. 8401 (16375) Shigella sonnei Ss046
(13151) Shrew Aug. 2008 (Broad/sorAra2) (sorAra2) Shrew June 2006
(Broad/sorAra1) (sorAra1) Silicibacter pomeroyi DSS-3 (siliPome_DSS_3)
Silicibacter sp. TM1040 (13040) Silkworm (Bombyx_mori_p50T_2.0) Simhuman Oct.
2011 (simHuman/simHuman) (simHuman) Simhumanmammal Oct. 2011
(simHumanMammal/simHumanMammal) (simHumanMammal) Simmam Jan. 2011
(SimMamV1/simHumanMam) (simHumanMam) Simprim Jan. 2011 (SimPrimV1/simHumanPrim)
(simHumanPrim) Simrefmam Jan. 2011 (SimRefMamV1/simRefMam) (simRefMam)
Sinorhizobium medicae WSM419 (16304) Sinorhizobium meliloti 1021 (sinoMeli)
Sloth Jul. 2008 (Broad/choHof1) (choHof1) Snail Jun. 2013 (bioGla0/bioGla0)
(bioGla0) Sodalis glossinidius str. 'morsitans' (sodaGlos_MORSITANS) Solanum
lycopersicum ITAG 2.3 Solanum lycopersicum Sol Genomics itag2.4 Solanum
tuberosum ITAG 001 Solanum tuberosum JGI v4.03 Solibacter usitatus Ellin6076
(soliUsit_ELLIN6076) Sorangium cellulosum 'So ce 56' (28111) Sorghum bicolor JGI
1.4 Sorghum bicolor JGI v3.1 Southern platyfish Jan 2012
(Xiphophorus_maculatus-4.4.2/xipMac1) (xipMac1) Southern sea otter Jun. 2019
(ASM641071v1/enhLutNer1) (enhLutNer1) Speckled mousebird May 2014
(ASM69071v1/colStr1) (colStr1) Sperm whale Sep. 2013
(Physeter_macrocephalus-2.0.2/phyCat1) (phyCat1) Sphingomonas wittichii RW1
(17343) Sphingopyxis alaskensis RB2256 (sphiAlas_RB2256) Spiny softshell turtle
May 2013 (ASM38561v1/apaSpi1) (apaSpi1) Spirodela polyrhiza JGI v2.0 Spotted gar
Dec 2011 (LepOcu1/lepOcu1) (lepOcu1) Squirrel Feb. 2008 (Broad/speTri1)
(speTri1) Squirrel Nov. 2011 (Broad/speTri2) (speTri2) Squirrel monkey Oct. 2011
(Broad/saiBol1) (saiBol1) Staphylococcus aureus RF122 (63) Staphylococcus aureus
subsp. aureus COL (238) Staphylococcus aureus subsp. aureus JH1 (15758)
Staphylococcus aureus subsp. aureus JH9 (15757) Staphylococcus aureus subsp.
aureus MRSA252 (265) Staphylococcus aureus subsp. aureus MSSA476 (266)
Staphylococcus aureus subsp. aureus MW2 (306) Staphylococcus aureus subsp.
aureus Mu3 (18509) Staphylococcus aureus subsp. aureus Mu50 (stapAure_MU50)
Staphylococcus aureus subsp. aureus N315 (264) Staphylococcus aureus subsp.
aureus NCTC 8325 (237) Staphylococcus aureus subsp. aureus USA300 (16313)
Staphylococcus aureus subsp. aureus USA300_TCH1516 (19489) Staphylococcus aureus
subsp. aureus str. Newman (18801) Staphylococcus epidermidis ATCC 12228 (279)
Staphylococcus epidermidis RP62A (64) Staphylococcus haemolyticus JCSC1435
(12508) Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (15596)
Staphylothermus marinus F1 (stapMari1) Star-nosed mole Mar 2012
(ConCri1.0/conCri1) (conCri1) Starlet sea anemone Jun. 2007 (JGI-PDF/nemVec1)
(nemVec1) Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1) Straw colored fruit
bat 13 Sep 2013 (ASM46528v1/eidHel1) (eidHel1) Streptococcus agalactiae 2603V/R
(330) Streptococcus agalactiae A909 (326) Streptococcus agalactiae NEM316 (334)
Streptococcus gordonii str. Challis substr. CH1 (66) Streptococcus mutans UA159
(333) Streptococcus pneumoniae D39 (16374) Streptococcus pneumoniae Hungary19A-6
(28035) Streptococcus pneumoniae R6 (278) Streptococcus pneumoniae TIGR4 (277)
Streptococcus pyogenes M1 GAS (strePyog_M1_GAS) Streptococcus pyogenes MGAS10270
(16364) Streptococcus pyogenes MGAS10394 (12469) Streptococcus pyogenes
MGAS10750 (16366) Streptococcus pyogenes MGAS2096 (16365) Streptococcus pyogenes
MGAS315 (311) Streptococcus pyogenes MGAS5005 (13888) Streptococcus pyogenes
MGAS6180 (13887) Streptococcus pyogenes MGAS8232 (286) Streptococcus pyogenes
MGAS9429 (16363) Streptococcus pyogenes SSI-1 (301) Streptococcus pyogenes str.
Manfredo (270) Streptococcus sanguinis SK36 (13942) Streptococcus suis 05ZYH33
(17153) Streptococcus suis 98HAH33 (17155) Streptococcus thermophilus CNRZ1066
(13163) Streptococcus thermophilus LMD-9 (13773) Streptococcus thermophilus LMG
18311 (13162) Streptomyces avermitilis MA-4680 (189) Streptomyces coelicolor
A3(2) (streCoel) Sudan ebolavirus Aug. 2014 (NC_006432.1/sudEbo1) (sudEbo1)
Sulfolobus acidocaldarius DSM 639 (sulfAcid1) Sulfolobus solfataricus P2
(sulSol1) Sulfolobus tokodaii str. 7 (sulfToko1) Sulfurimonas denitrificans DSM
1251 (thioDeni_ATCC33889) Sulfurovum sp. NBC37-1 (18965) Sunbittern May 2014
(ASM69077v1/eurHel1) (eurHel1) Symbiobacterium thermophilum IAM 14863
(symbTher_IAM14863) Synechococcus elongatus PCC 6301 (13282) Synechococcus
elongatus PCC 7942 (10645) Synechococcus sp. CC9311 (12530) Synechococcus sp.
CC9605 (13643) Synechococcus sp. CC9902 (13655) Synechococcus sp.
JA-2-3B'a(2-13) (16252) Synechococcus sp. JA-3-3Ab (16251) Synechococcus sp. PCC
7002 (28247) Synechococcus sp. RCC307 (13654) Synechococcus sp. WH 7803 (13642)
Synechococcus sp. WH 8102 (syneSp_WH8102) Synechocystis sp. PCC 6803 (synePCC6)
Syntrophobacter fumaroxidans MPOB (syntFuma_MPOB) Syntrophomonas wolfei subsp.
wolfei str. Goettingen (syntWolf_GOETTINGEN) Syntrophus aciditrophicus SB
(syntAcid_SB) T. castaneum Sep. 2005 (Baylor 2.0/triCas2) (triCas2) Tai forest
ebolavirus Aug. 2014 (NC_014372.1/taiEbo1) (taiEbo1) Tarenaya hassleriana RefSeq
v1 Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1) Tarsier Sep. 2013
(Tarsius_syrichta-2.0.1/tarSyr2) (tarSyr2) Tasmanian devil Feb. 2011 (WTSI
Devil_ref v7.0/sarHar1) (sarHar1) Tenrec July 2005 (Broad/echTel1) (echTel1)
Tenrec Nov. 2012 (Broad/echTel2) (echTel2) Tetraodon Feb. 2004 (Genoscope
7/tetNig1) (tetNig1) Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2)
Thellungiella parvula TpV84 Theobroma cacao D. Gilbert public gene set 8 Mar
2012 on assembly v1.1 Theobroma cacao Dec 2010 (CIRAD/Theobroma cacao Belizian
Criollo) (Tcacao_1.0) Theobroma cacao RefSeq v1.1 Thermoanaerobacter
pseudethanolicus ATCC 33223 (13901) Thermoanaerobacter sp. X514 (16394)
Thermoanaerobacter tengcongensis MB4 (therTeng) Thermobifida fusca YX
(therFusc_YX) Thermococcus kodakarensis KOD1 (therKoda1) Thermofilum pendens Hrk
5 (therPend1) Thermoplasma acidophilum DSM 1728 (therAcid1) Thermoplasma
volcanium GSS1 (therVolc1) Thermosipho melanesiensis BI429 (17249)
Thermosynechococcus elongatus BP-1 (therElon) Thermotoga lettingae TMO (15644)
Thermotoga maritima MSB8 (therMari) Thermotoga petrophila RKU-1 (therPetr_RKU_1)
Thermotoga sp. RQ2 (19543) Thermus thermophilus HB27 (therTher_HB27) Thermus
thermophilus HB8 (therTher_HB8) Thiobacillus denitrificans ATCC 25259
(thioDeni_ATCC25259) Thiomicrospira crunogena XCL-2 (thioCrun_XCL_2) Tibetan
antelope May 2013 (PHO1.0/panHod1) (panHod1) Tibetan frog Mar. 2015
(BGI_ZX_2015/nanPar1) (nanPar1) Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1)
(pseHum1) Tiger rockfish 22 Oct-2013 (Snig1.0/sebNig1) (sebNig1) Tongue sole 28
Jan-2014 (Cse_v1.0/cynSem1) (cynSem1) Tree shrew Dec. 2006 (Broad/tupBel1)
(tupBel1) Treponema denticola ATCC 35405 (4) Treponema pallidum subsp. pallidum
str. Nichols (trepPall) Trichodesmium erythraeum IMS101 (tricEryt_IMS101)
Trifolium pratense JGI v2 Triticum aestivum Ensembl Plants TGACv1 Triticum
aestivum IWGSC1.1 Triticum turgidum Svevo v1.0 Tropheryma whipplei TW08/27
(tropWhip_TW08_27) Tropheryma whipplei str. Twist (95) Trypanosoma brucei 427
Lister strain genome build 37 Turkey Dec. 2009 (TGC Turkey_2.01/melGal1)
(melGal1) Turkey Nov. 2014 (Turkey_5.0/melGal5) (melGal5) Upper Galilee
mountains blind mole rat Jun 2014 (S.galili_v1.0/nanGal1) (nanGal1) Ureaplasma
parvum serovar 3 str. ATCC 27815 (19087) Ureaplasma parvum serovar 3 str. ATCC
700970 (ureaUrea) Utricularia gibba CoGe v4 Verminephrobacter eiseniae EF01-2
(vermEise_EF01_2) Vibrio cholerae O1 biovar eltor str. N16961 (vibrChol1) Vibrio
cholerae O395 (vibrChol_O395_1) Vibrio fischeri ES114 (vibrFisc_ES114_1) Vibrio
harveyi ATCC BAA-1116 (19857) Vibrio parahaemolyticus RIMD 2210633 (vibrPara1)
Vibrio vulnificus CMCP6 (vibrVuln_CMCP6_1) Vibrio vulnificus YJ016
(vibrVuln_YJ016_1) Vigna radiata var. radiata LIS v6 Vitis vinifera JGI
12xMarch2010 Vitis vinifera genescope v1 Wallaby Nov. 2007 (Baylor 1.0/macEug1)
(macEug1) Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) (macEug2) Water buffalo Sep.
2013 (UMD_CASPUR_WB_2.0/bubBub1) (bubBub1) Weddell seal Mar 2013
(LepWed1.0/lepWed1) (lepWed1) West African lungfish Jul 2021 (Protopterus
annectens, PAN1.0) (GCF_019279795.1) White rhinoceros May 2012
(CerSimSim1.0/cerSim1) (cerSim1) White throated tinamou Aug 2014
(ASM70537v2/tinGut2) (tinGut2) White throated tinamou Jun 2014
(ASM70537v1/tinGut1) (tinGut1) White-tailed deer Apr 2017 (Odocoileus
virginianus) (GCF_002102435.1, Ovir.te_1.0) White-tailed eagle May 2014
(ASM69140v1/halAlb1) (halAlb1) White-tailed tropicbird May 2014
(ASM68728v1/phaLep1) (phaLep1) White-throated sparrow Apr 2013
(ASM38545v1/zonAlb1) (zonAlb1) Wigglesworthia glossinidia endosymbiont of
Glossina brevipalpis (wiggBrev) Wild yak Oct 2011 (BosGru_v2.0/bosMut1)
(bosMut1) Wolbachia endosymbiont of Drosophila melanogaster
(wolbEndo_OF_DROSOPHIL) Wolbachia endosymbiont strain TRS of Brugia malayi
(12475) Wolinella succinogenes DSM 1740 (woliSucc) X. tropicalis Aug. 2005 (JGI
4.1/xenTro2) (xenTro2) X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)
(xenTro9) X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) (xenTro3) X. tropicalis Nov.
2019 (UCB_Xtro_10.0/xenTro10) (xenTro10) X. tropicalis Oct. 2004 (JGI
3.0/xenTro1) (xenTro1) X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) (xenTro7)
Xanthobacter autotrophicus Py2 (15756) Xanthomonas axonopodis pv. citri str. 306
(297) Xanthomonas campestris pv. campestris str. 8004 (15) Xanthomonas
campestris pv. campestris str. ATCC 33913 (xantCamp) Xanthomonas campestris pv.
vesicatoria str. 85-10 (13649) Xanthomonas oryzae pv. oryzae KACC10331 (12931)
Xanthomonas oryzae pv. oryzae MAFF 311018 (16297) Xanthomonas oryzae pv. oryzae
PXO99A (Xanthomonas_oryzae_PXO99A) Xenopus tropicalis (xenTro9.1) Xylella
fastidiosa 9a5c (xyleFast) Xylella fastidiosa M12 (17823) Xylella fastidiosa
Temecula1 (285) Yangtze river dolphin 31 Jul 2013
(Lipotes_vexillifer_v1/lipVex1) (lipVex1) Yellow-throated sandgrouse Jun 2014
(ASM69924v1/pteGut1) (pteGut1) Yellowbelly pufferfish May 2013 (version 1 of
Takifugu flavidus genome/takFla1) (takFla1) Yersinia enterocolitica subsp.
enterocolitica 8081 (190) Yersinia pestis Angola (16067) Yersinia pestis Antiqua
(16645) Yersinia pestis CO92 (yersPest_CO92) Yersinia pestis KIM (288) Yersinia
pestis Nepal516 (16646) Yersinia pestis Pestoides F (16700) Yersinia pestis
biovar Microtus str. 91001 (10638) Yersinia pseudotuberculosis IP 31758 (16070)
Yersinia pseudotuberculosis IP 32953 (12950) Yersinia pseudotuberculosis YPIII
(28743) Zaire ebolavirus Aug. 2014 (NC_002549.1/zaiEbo1) (zaiEbo1) Zea mays B73
AGP v4.0 Zea mays PH207 v1.0 Zebra Mbuna Mar 2012 (MetZeb1.1/mayZeb1) (mayZeb1)
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) (taeGut2) Zebra finch Jul. 2008
(WUGSC 3.2.4/taeGut1) (taeGut1) Zebrafish (GRCz11/danRer11) without alt contigs
Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6) Zebrafish Jul. 2010 (Zv9/danRer7)
(danRer7) Zebrafish July 2007 (Zv7/danRer5) (danRer5) Zebrafish Mar. 2006
(Zv6/danRer4) (danRer4) Zebrafish May 2005 (Zv5/danRer3) (danRer3) Zebrafish May
2017 (GRCz11/danRer11) (danRer11) Zebrafish Sep. 2014 (GRCz10/danRer10)
(danRer10) Zostera marina JGI v2.2 Zoysia japonica ssp. nagirizaki Zoysia Genome
Database v1.1 Zymomonas mobilis subsp. mobilis ZM4 (zymoMobi_ZM4) canFam3
chimp/human Jun. 2008 (UCSC Recon/homPan20) (homPan20) hg19Haplotypes Feb. 2009
(GRCh37/hg19Haps) (hg19Haps) mm9 with ERCC spike-in orang/human Jun. 2008 (UCSC
Recon/homIni20) (homIni20) pUC18 Plasmid (pUC18) phiX174 (phiX) tarInv Dec. 2013
(GRCh38Tar/tarIhg38) (tarIhg38) uncultured methanogenic archaeon RC-I
(uncuMeth_RCI)
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