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BIBBOX

Menu
 * Home
 * About Expand child menu
   * Rationale
   * Stakeholder and Data Objects
   * BIBBOX Architecture
   * Biobank Operational Module
 * BIBBOX Statistics Expand child menu
   * BIBBOX Machines
   * BIBBOX Apps installed
   * BIBBOX Hardware
   * APP Store (Github)
   * Docker Images (Dockerhub)
 * Resources Expand child menu
   * BIBBOX Virtual Machine
   * Collection Portrait
   * Documentation
   * Tools Shortlist
   * Icon Sets


WELCOME TO BIBBOX


BIBBOX MACHINES:

6


APPS INSTALLED:

71


CPUS USED:

26


MEMORY USED:

66 GB


DISK SPACE USED:

501 GB


BIBBOX APPS:

41


APPS REVIEWED:

19


DOCKER IMAGES:

34


DOCKER DOWNLOADS:

61.839


GITHUB COMMITS:

3.710

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HOME

Rationale

Biobank software needs

Biological resources, such as cells, tissues or biomolecules are considered as
the essential raw material for the advancement of biotechnology, human health,
and for research and development in life sciences. Every sample in a collection
includes attached data on factors such as health status, nutrition, lifestyle,
and environmental exposure. Following the rapid progress in omics-research also
a wide range of high-throughput data will be attached to samples, extending the
data space related to a sample collection.

The handling of samples (sample management in a biobank and LIMS for downstream
analysis) and related data is the main tasks of a biobanking software
solution. For the fast growing field of biobanking several commercial software
solutions are upcoming, however they mostly cover only specific aspects and use
proprietary data schemas, which leads to a fragmented and heterogeneous software
landscape.

An open-source approach can face this challenge and guarantee sustainability and
data harmonisation, but most of the open-source software tools cannot be used
without significant effort for installation, configuration and maintenance and
lack documentation for non-IT experts.

 

Our Solution

Open Source Software Toolbox for Biobanks

BiBBoX will provide an integration platform for open-source software in the
biobank domain providing a single unified user experience. It enables biobanks
to pull together information and applications into one service where users have
quick access to all services specific to their role. Besides the integration
approach we developed an automatic classification system for pathological
findings and multilevel data glyphs for the interactive exploration of the
classified records. These tools will also be included in BiBBoX and will be
further develop according to the needs of the biobank community.

In a virtual machine we will install, configure and connect a core set of
open-source biobank software tools, ready to go with minimal IT effort. Featured
with random generated example data, interested stakeholders can use and evaluate
open-source software solutions right “out of the box”.The composition of the
BiBBoX software toolbox will be community based.

 

The Community

Friends and collaborators

The BiBBoX platform is supported by the following institutions, projects, and
people:

B3Africa, Horizon 2020 research and innovation programme, grant agreement No
654404
BBMRI-ERIC Common Service IT
BBMRI.at
RD-Connect


FIND US

Address
Neue Stiftingtalstraße 2
Graz, 8010
AUSTRIA

Hours
Monday—Thursday: 9:00AM–5:00PM


WHAT IS BIBBOX?

BIBBOX (Basic Infrastructure Building Box)
helps your organisation to set up and manage all the software tools, you are
using.


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