deposit-1.wwpdb.org Open in urlscan Pro
128.6.150.50  Public Scan

Submitted URL: https://da-ann-alpha-2.rcsb.rutgers.edu/
Effective URL: https://deposit-1.wwpdb.org/
Submission: On March 23 via api from US — Scanned from US

Form analysis 3 forms found in the DOM

Name: startPOST /deposition/new

<form autocomplete="off" name="start" method="post" action="/deposition/new"><input type="hidden" name="csrfmiddlewaretoken" value="9iS2jJd8qh8QDaRipW5yENPMWamKezcYnFSKyyf6b0ImrNM99UyAEOk2xzGLTtbX">
  <table>
    <tbody>
      <tr>
        <td>Your e-mail address</td>
        <td><input id="emailField" autocomplete="true" name="email" value="" type="text"></td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="Please enter your e-mail address. This will be used to send your login details." data-hasqtip="1"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="emailerror" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Invalid e-mail address</p>
              </div>
            </div>
          </div>
        </td>
      </tr>
      <tr id="passwordRow">
        <td>Password (optional, or we will provide one) <br><span style="font-size:10px;">This is a shared "group password"<br>(6 to 16 alphanumeric characters)</span></td>
        <td><input autocomplete="false" name="password" value="" type="password"></td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="Please provide a password of more than 5 and less than 17 letters and numbers. If you don't provide a password then a random password will be generated for you."
                data-hasqtip="2"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="password1error" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> A password should be between 6 and 16 alphanumeric characters</p>
              </div>
            </div>
          </div>
          <div id="password2error" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> A password should only contain alphanumeric characters (letters and numbers)</p>
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            </div>
          </div>
        </td>
      </tr>
      <tr>
        <td>Country/Region</td>
        <td>
          <select id="location2" name="location">
            <option>Select...</option>
            <option>United Kingdom</option>
            <option>United States</option>
            <option>Japan</option>
            <option>Afghanistan</option>
            <option>Aland Islands</option>
            <option>Albania</option>
            <option>Algeria</option>
            <option>American Samoa</option>
            <option>Andorra</option>
            <option>Angola</option>
            <option>Anguilla</option>
            <option>Antarctica</option>
            <option>Antigua And Barbuda</option>
            <option>Argentina</option>
            <option>Armenia</option>
            <option>Aruba</option>
            <option>Australia</option>
            <option>Austria</option>
            <option>Azerbaijan</option>
            <option>Bahamas</option>
            <option>Bahrain</option>
            <option>Bangladesh</option>
            <option>Barbados</option>
            <option>Belarus</option>
            <option>Belgium</option>
            <option>Belize</option>
            <option>Benin</option>
            <option>Bermuda</option>
            <option>Bhutan</option>
            <option>Bolivia, Plurinational State Of</option>
            <option>Bonaire, Sint Eustatius And Saba</option>
            <option>Bosnia And Herzegovina</option>
            <option>Botswana</option>
            <option>Bouvet Island</option>
            <option>Brazil</option>
            <option>British Indian Ocean Territory</option>
            <option>Brunei Darussalam</option>
            <option>Bulgaria</option>
            <option>Burkina Faso</option>
            <option>Burundi</option>
            <option>Cambodia</option>
            <option>Cameroon</option>
            <option>Canada</option>
            <option>Cape Verde</option>
            <option>Cayman Islands</option>
            <option>Central African Republic</option>
            <option>Chad</option>
            <option>Chile</option>
            <option>China</option>
            <option>Christmas Island</option>
            <option>Cocos (Keeling) Islands</option>
            <option>Colombia</option>
            <option>Comoros</option>
            <option>Congo</option>
            <option>Congo, The Democratic Republic Of The</option>
            <option>Cook Islands</option>
            <option>Costa Rica</option>
            <option>Cote D'Ivoire</option>
            <option>Croatia</option>
            <option>Cuba</option>
            <option>Curacao</option>
            <option>Cyprus</option>
            <option>Czech Republic</option>
            <option>Denmark</option>
            <option>Djibouti</option>
            <option>Dominica</option>
            <option>Dominican Republic</option>
            <option>Ecuador</option>
            <option>Egypt</option>
            <option>El Salvador</option>
            <option>Equatorial Guinea</option>
            <option>Eritrea</option>
            <option>Estonia</option>
            <option>Ethiopia</option>
            <option>Falkland Islands (Malvinas)</option>
            <option>Faroe Islands</option>
            <option>Fiji</option>
            <option>Finland</option>
            <option>France</option>
            <option>French Guiana</option>
            <option>French Polynesia</option>
            <option>French Southern Territories</option>
            <option>Gabon</option>
            <option>Gambia</option>
            <option>Georgia</option>
            <option>Germany</option>
            <option>Ghana</option>
            <option>Gibraltar</option>
            <option>Greece</option>
            <option>Greenland</option>
            <option>Grenada</option>
            <option>Guadeloupe</option>
            <option>Guam</option>
            <option>Guatemala</option>
            <option>Guernsey</option>
            <option>Guinea</option>
            <option>Guinea-Bissau</option>
            <option>Guyana</option>
            <option>Haiti</option>
            <option>Heard Island And Mcdonald Islands</option>
            <option>Holy See (Vatican City State)</option>
            <option>Honduras</option>
            <option>Hong Kong</option>
            <option>Hungary</option>
            <option>Iceland</option>
            <option>India</option>
            <option>Indonesia</option>
            <option>Iran, Islamic Republic Of</option>
            <option>Iraq</option>
            <option>Ireland</option>
            <option>Isle Of Man</option>
            <option>Israel</option>
            <option>Italy</option>
            <option>Jamaica</option>
            <option>Japan</option>
            <option>Jersey</option>
            <option>Jordan</option>
            <option>Kazakhstan</option>
            <option>Kenya</option>
            <option>Kiribati</option>
            <option>Korea, Democratic People'S Republic Of</option>
            <option>Korea, Republic Of</option>
            <option>Kuwait</option>
            <option>Kyrgyzstan</option>
            <option>Lao People'S Democratic Republic</option>
            <option>Latvia</option>
            <option>Lebanon</option>
            <option>Lesotho</option>
            <option>Liberia</option>
            <option>Libya</option>
            <option>Liechtenstein</option>
            <option>Lithuania</option>
            <option>Luxembourg</option>
            <option>Macao</option>
            <option>Macedonia</option>
            <option>Madagascar</option>
            <option>Malawi</option>
            <option>Malaysia</option>
            <option>Maldives</option>
            <option>Mali</option>
            <option>Malta</option>
            <option>Marshall Islands</option>
            <option>Martinique</option>
            <option>Mauritania</option>
            <option>Mauritius</option>
            <option>Mayotte</option>
            <option>Mexico</option>
            <option>Micronesia, Federated States Of</option>
            <option>Moldova, Republic Of</option>
            <option>Monaco</option>
            <option>Mongolia</option>
            <option>Montenegro</option>
            <option>Montserrat</option>
            <option>Morocco</option>
            <option>Mozambique</option>
            <option>Myanmar</option>
            <option>Namibia</option>
            <option>Nauru</option>
            <option>Nepal</option>
            <option>Netherlands</option>
            <option>New Caledonia</option>
            <option>New Zealand</option>
            <option>Nicaragua</option>
            <option>Niger</option>
            <option>Nigeria</option>
            <option>Niue</option>
            <option>Norfolk Island</option>
            <option>Northern Mariana Islands</option>
            <option>Norway</option>
            <option>Oman</option>
            <option>Pakistan</option>
            <option>Palau</option>
            <option>Palestinian Territory</option>
            <option>Panama</option>
            <option>Papua New Guinea</option>
            <option>Paraguay</option>
            <option>Peru</option>
            <option>Philippines</option>
            <option>Pitcairn</option>
            <option>Poland</option>
            <option>Portugal</option>
            <option>Puerto Rico</option>
            <option>Qatar</option>
            <option>Reunion</option>
            <option>Romania</option>
            <option>Russian Federation</option>
            <option>Rwanda</option>
            <option>Saint Barthelemy</option>
            <option>Saint Helena, Ascension And Tristan Da Cunha</option>
            <option>Saint Kitts And Nevis</option>
            <option>Saint Lucia</option>
            <option>Saint Martin (French Part)</option>
            <option>Saint Pierre And Miquelon</option>
            <option>Saint Vincent And The Grenadines</option>
            <option>Samoa</option>
            <option>San Marino</option>
            <option>Sao Tome And Principe</option>
            <option>Saudi Arabia</option>
            <option>Senegal</option>
            <option>Serbia</option>
            <option>Seychelles</option>
            <option>Sierra Leone</option>
            <option>Singapore</option>
            <option>Sint Maarten (Dutch Part)</option>
            <option>Slovakia</option>
            <option>Slovenia</option>
            <option>Solomon Islands</option>
            <option>Somalia</option>
            <option>South Africa</option>
            <option>South Georgia And The South Sandwich Islands</option>
            <option>South Sudan</option>
            <option>Spain</option>
            <option>Sri Lanka</option>
            <option>Sudan</option>
            <option>Suriname</option>
            <option>Svalbard And Jan Mayen</option>
            <option>Swaziland</option>
            <option>Sweden</option>
            <option>Switzerland</option>
            <option>Syrian Arab Republic</option>
            <option>Taiwan</option>
            <option>Tajikistan</option>
            <option>Tanzania, United Republic Of</option>
            <option>Thailand</option>
            <option>Timor-Leste</option>
            <option>Togo</option>
            <option>Tokelau</option>
            <option>Tonga</option>
            <option>Trinidad And Tobago</option>
            <option>Tunisia</option>
            <option>Turkey</option>
            <option>Turkmenistan</option>
            <option>Turks And Caicos Islands</option>
            <option>Tuvalu</option>
            <option>Uganda</option>
            <option>Ukraine</option>
            <option>United Arab Emirates</option>
            <option>United Kingdom</option>
            <option>United States</option>
            <option>United States Minor Outlying Islands</option>
            <option>Uruguay</option>
            <option>Uzbekistan</option>
            <option>Vanuatu</option>
            <option>Venezuela, Bolivarian Republic Of</option>
            <option>Viet Nam</option>
            <option>Virgin Islands, British</option>
            <option>Virgin Islands, U.S.</option>
            <option>Wallis And Futuna</option>
            <option>Western Sahara</option>
            <option>Yemen</option>
            <option>Zambia</option>
            <option>Zimbabwe</option>
          </select>
        </td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all">
              <button type="button" onclick="restart_dep();">Reset</button>
            </li>
          </ul>
        </td>
        <!--<td>
              <div id="locationerror" class="form_error" style="display: none;">
                 <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Please select the location of your institute</p></div></div>
              </div>
      </td>-->
      </tr>
      <tr>
        <td>Experimental method</td>
        <td></td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="Please select all relevant experiment types which relate to this deposition." data-hasqtip="3"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="dataerror" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Select at least one experiment method or submethod</p>
              </div>
            </div>
          </div>
        </td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="XRAY" type="checkbox">X-Ray Diffraction</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="EM" type="checkbox">Electron Microscopy</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="NMR" type="checkbox">Solution NMR</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="ND" type="checkbox">Neutron Diffraction</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="EC" type="checkbox">Electron Crystallography</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="SSNMR" type="checkbox">Solid-state NMR</td>
      </tr>
      <tr>
        <!--  -->
        <td colspan="4">&nbsp;&nbsp;&nbsp;&nbsp;<input class="wwpdb_checkbox expmethod" name="FD" type="checkbox">Fiber Diffraction</td>
      </tr>
      <tr id="emmapdep" style="display: none;">
        <td style="padding-left: 3em;">Has the associated map been deposited previously?<br>
          <input type="radio" name="emmapdep" value="N" onclick="noRelated('EMDB');"><label>No</label><br>
          <input type="radio" name="emmapdep" value="Y" onclick="getRelated('EMDB');"><label>Yes</label><br>
        </td>
      </tr>
      <tr id="ecmapdep" style="display: none;">
        <td style="padding-left: 3em;">Has the associated map been deposited previously?<br>
          <input type="radio" name="emmapdep" value="N" onclick="noRelated('EMDB');"><label>No. I would like to deposit a map as part of this submission.</label><br>
          <input type="radio" name="emmapdep" value="Nsf" onclick="noRelated('noEMDB');"><label>No, but I would like to deposit structure factors only.</label><br>
          <input type="radio" name="emmapdep" value="Y" onclick="getRelated('EMDB');"><label>Yes</label><br>
        </td>
      </tr>
      <tr id="EMDBrelated" style="display: none;">
        <td style="padding-left: 3em;">Related EMDB deposition:</td>
        <td>
          <input name="related_emdb" value="" type="text">&nbsp;e.g. EMD-1234
        </td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="Please enter your EMDB id code for the associated map you deposited previously." data-hasqtip="4"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="relatedemdberror" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Invalid EMDB code</p>
              </div>
            </div>
          </div>
        </td>
      </tr>
      <tr id="composite_question" style="display: none;">
        <td id="" style="padding-left: 3em; padding-top: 1em;">Is this a composite map deposition?<br>
          <input type="radio" name="composite_question" value="No" onclick="compositeAnswered()"><label>No</label><br>
          <input type="radio" name="composite_question" value="Composite map" onclick="compositeAnswered()"><label>Yes</label><br><br>
        </td>
        <td>
          <div id="composite_question_error" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Please select whether the map is a composite map.</p>
              </div>
            </div>
          </div>
        </td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="A composite map, also known as a chimeric map, is one which has been artificially constructed from multiple focused refinements (each of which should be deposited as a related deposition for validation purposes). It should also have a low resolution consensus map deposited as an associated EMDB entry which supports the overall structure. More details on this can be found in <a href='https://www.ebi.ac.uk/emdb/documentation/policies#1-3'> section 1.3 of EMDB Policies</a>.
" data-hasqtip="5">
              </span>
            </li>
          </ul>
        </td>
      </tr>
      <tr id="composite_question_explanation" style="display: none;">
        <td style="color:red"> A composite map, also known as a chimeric map, is one which has been artificially constructed from multiple focused refinements (each of which should be deposited as a related deposition for validation purposes). It
          should also have a low resolution consensus map deposited as an associated EMDB entry which supports the overall structure. More details on this can be found in
          <a href="https://www.ebi.ac.uk/emdb/documentation/policies#1-3"> section 1.3 of EMDB Policies</a>. </td>
      </tr>
      <tr id="nmrdatadep" style="display: none;">
        <td style="padding-left: 3em;">Has the associated NMR experimental data been deposited previously?<br>
          <input type="radio" name="nmrdatadep" value="N" onclick="noRelated('BMRB');"><label>No</label><br>
          <input type="radio" name="nmrdatadep" value="Y" onclick="getRelated('BMRB');"><label>Yes</label><br>
        </td>
      </tr>
      <tr id="BMRBrelated" style="display: none;">
        <td style="padding-left: 3em;">Related BMRB deposition:</td>
        <td>
          <input name="related_bmrb" value="" type="text">&nbsp;e.g. 12345
        </td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="If you have already deposited NMR data (chemical shifts) for this deposition at BMRB, please provide the BMRB id code." data-hasqtip="6"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="relatedbmrberror" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> BMRB code should be an integer containing no more than 5 digits</p>
              </div>
            </div>
          </div>
        </td>
      </tr>
      <tr>
        <td style="padding-left: 1.5em; padding-top: 1em; color: grey;">Requested accession codes </td>
        <td></td>
        <td>
          <ul class="icons ui-widget ui-helper-clearfix">
            <li class="ui-state-default ui-corner-all" style="background: none;">
              <span class="ui-icon ui-icon-info" data-qtip-left="You opted to receive these selected accession codes." data-hasqtip="7"></span>
            </li>
          </ul>
        </td>
        <td>
          <div id="ids1error" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> At least one accession code must be selected</p>
              </div>
            </div>
          </div>
          <div id="ids2error" class="form_error" style="display: none;">
            <div class="ui-widget">
              <div class="ui-state-error ui-corner-all" style="padding: 0;">
                <p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Only a BMRB code was requested. Please deposit at <a href="https://deposit.bmrb.io/">BMRB</a> if you do not wish to deposit
                  any coordinates. Otherwise request an additional PDB code.</p>
              </div>
            </div>
          </div>
        </td>
      </tr>
      <tr>
        <td style="padding-left: 1.5em; color: grey;">
          <label style="white-space: nowrap; display: inline-block;"><input class="wwpdb_checkbox expcode" name="PDB" type="checkbox" disabled="disabled">PDB&nbsp;&nbsp;&nbsp;&nbsp;</label>
          <label style="white-space: nowrap; display: inline-block;"><input class="wwpdb_checkbox expcode" name="EMDB" type="checkbox" disabled="disabled">EMDB&nbsp;&nbsp;&nbsp;&nbsp;</label>
          <label style="white-space: nowrap; display: inline-block;"><input class="wwpdb_checkbox expcode" name="BMRB" type="checkbox" disabled="disabled">BMRB&nbsp;&nbsp;&nbsp;&nbsp;</label>
        </td>
      </tr>
      <!--
         <tr>
           <td>Related depositions IDs as space delimited list</td>
           <td><input name='related' value='' type='text' /></td>
           <td>
             <ul class="icons ui-widget ui-helper-clearfix">
               <li class="ui-state-default ui-corner-all">
                 <span class="ui-icon ui-icon-info" data-qtip-left="Please provide a valid ID for an existing deposition of the form D_xxxxxxxxx. This will be used to determine the site where the data will be annotated and indicate to annotation staff that this data is related to another deposition."></span>
               </li>
             </ul>
           </td>
           <td>
              <div id="relatederror" class="form_error" style="display: none;">
                 <div class="ui-widget"><div class="ui-state-error ui-corner-all" style="padding: 0;"><p style="margin: 5px;"><span class="ui-icon ui-icon-alert" style="float: left; margin-right: .3em;"></span> Related depositions are not well-formatted</p></div></div>
              </div>
           </td>
         </tr>

         <tr>
           <td>Structural genomics</td>
           <td>
             <select name="struct_gen">
               <option>No</option>
               <option >Yes</option>
             </select>
           </td>
           <td>
             <ul class="icons ui-widget ui-helper-clearfix">
               <li class="ui-state-default ui-corner-all">
                 <span class="ui-icon ui-icon-info" data-qtip-left="Is this deposition part of a structural genomics project?"></span>
               </li>
             </ul>
           </td>
           <td></td>
         </tr>
         -->
      <tr>
        <td>
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