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VHP4Safety-Docs


Project Information

 * Our Mission and Vision
 * VHP4Safety Research Lines
 * Case Studies and Regulatory Questions
 * Partners and Consortium
 * Contact Us

Service Tutorials

 * AOP-Wiki Service Tutorial
 * AOP-Wiki API Tutorial
 * BridgeDb: Mapping Gene Identifiers
 * cpLogD: Predicting Water–Octanol Distribution Coefficient (logD) for Chemical
   Compounds
 * SOM Prediction: Site-of-Metabolism Prediction

Workflows

 * AOPLink: Extracting and Analyzing Data Related to an AOP of Interest
 * Information about chemicals

Service Catalog

 * AOP-Wiki Snorql UI
 * AOP-Wiki API
 * BridgeDb
 * CDK Depict
 * cpLogD
 * DECIMER
 * PopGen
 * SysRev
 * TXG-MAPr
 * VHP4Safety Wikibase

Glossary

 * VHP4Safety Glossary

Sustainability

 * Service Monitoring with Icinga 2

Miscellaneous

 * Data collection templates

VHP4Safety-Docs
 * 
 * Welcome to the VHP4Safety documentation!
 * View page source

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WELCOME TO THE VHP4SAFETY DOCUMENTATION!

Hi There! You have reached the public documentation pages for the Virtual Human
Platform for Safety Evaluation of Chemicals. This is a large Dutch research
project, funded by NWO. These pages contain information, documentation,
installation instructions and demos on how to use the software, models and data
generated in the project.

Project Information

 * Our Mission and Vision
   * Towards Safety Assessment Based on Human Data
   * Moving away from animal experimentation
 * VHP4Safety Research Lines
   * RL1: Building the Virtual Human Platform
   * RL2: Feeding the Virtual Human Platform
   * RL3: Implementing the Virtual Human Platform
 * Case Studies and Regulatory Questions
 * Partners and Consortium
 * Contact Us

Service Tutorials

 * AOP-Wiki Service Tutorial
   * AOP-Wiki SNORQL for Direct User Access
   * AOP-Wiki SPARQL Endpoint for Automated Access
   * AOP-Wiki RDF Schema
   * Conclusion
 * AOP-Wiki API Tutorial
   * The Swagger Interface
   * External access to API
   * Conclusion
 * BridgeDb: Mapping Gene Identifiers
   * Using BridgeDb with Python
   * Using BridgeDb with R
 * cpLogD: Predicting Water–Octanol Distribution Coefficient (logD) for Chemical
   Compounds
   * Introduction
   * Using cpLogD through a Web Browser
 * SOM Prediction: Site-of-Metabolism Prediction
   * Using SOM Prediction with Python

Workflows

 * AOPLink: Extracting and Analyzing Data Related to an AOP of Interest
   * Loading the Required Packages
   * Defining the AOP of Interest
   * AOP-Wiki RDF
   * ChemIdConvert and CDK Depict
   * AOP-DB RDF
   * WikiPathways RDF
 * Information about chemicals
   * Name to Structure
   * Visualize a Structure
   * External databases
   * Identifier Mapping
   * Metabolite prediction

Service Catalog

 * AOP-Wiki Snorql UI
 * AOP-Wiki API
 * BridgeDb
 * CDK Depict
 * cpLogD
 * DECIMER
 * PopGen
 * SysRev
 * TXG-MAPr
 * VHP4Safety Wikibase

Glossary

 * VHP4Safety Glossary
   * DEVELOPMENT VERSION
   * Toxicology in General
   * Risk assessment-related terms
   * Adverse Outcome Pathway-related terms
   * Server-related terms
   * Tool/service-related terms
   * Project-related terms
   * Organizations

Sustainability

 * Service Monitoring with Icinga 2
   * Installing Icinga 2
   * Creating Services
   * Applying Changes in Configuration Files

Miscellaneous

 * Data collection templates


INDICES AND TABLES

 * Index

 * Module Index

 * Search Page

Next

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© Copyright 2023-2024, Marc Teunis, PhD; Ozan Cinar, PhD; Egon Willighagen, PhD.

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