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USER ACCOUNT MENU

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PubMLST
Public databases for molecular typing
and microbial genome diversity


MAIN NAVIGATION

 * Home
 * Organisms
 * Species ID
 * About us
 * Updates




HOME

A collection of open-access, curated databases that integrate population
sequence data with provenance and phenotype information for over 100 different
microbial species and genera.

26,215,577
Alleles
885,036
Isolates
632,849
Genomes


ORGANISMS SEARCH


SEARCH

Search
Apply
Organisms

Choose your organism from a list of over 100 species and genera-specific
databases. Access molecular typing and isolate records.

Species ID

Use ribosomal MLST to accurately identify bacterial species from a genome
assembly.

Submit data

We welcome submissions to the databases we host. Submissions may consist of new
allele sequences, MLST profiles, or isolate records. Isolates may be accompanied
by a genome assembly.


@PUBMLST(LINK IS EXTERNAL)

Videos from the PubMLST forum event celebrating 10 years of the @M_R_F
Meningococcal Genome Library are now available on the PubMLST YouTube channel.
https://t.co/vnUELcHv69(link is external)




22 Sep 2021

To mark this anniversary, join us on 17 September 2021. Two morning sessions
will highlight the establishment and public health application of the
meningococcal genome library and afternoon sessions will highlight the
contributions from external users, including industry.




17 Aug 2021

Shortly after its inception, the MRF-MGL contributed to the introduction of the
ACYW meningococcal vaccines into the UK and it remains an essential resource,
nationally and internationally.




17 Aug 2021

Over this time, sequence-based molecular typing has become an essential
component of invasive meningococcal disease surveillance world-wide and
standardised typing methods and schemes have allowed comparability across
reference and research laboratories in different countries.




17 Aug 2021

Embedded within the https://t.co/leydcwWim4(link is external) platform MRF-MGL
stores provenance, demographic, epidemiological, and whole genome sequence
information for more than 5,000 meningococci isolated from patients in the UK
over the past 10 years.




17 Aug 2021

The next PubMLST forum event will be a hybrid meeting to celebrate 10 years of
the @M_R_F Meningococcal Genome Library. It will be on 17 September from 10am UK
(GMT+1) via Zoom and in person. Register at https://t.co/XJkxJBGoJ9(link is
external).




17 Aug 2021

Video from the PubMLST STD forum event on Friday is now available on our YouTube
channel. https://t.co/nH1Jut0W9a(link is external)




15 Jun 2021

RT @AnastasiaUnitt(link is external) Next Friday (11/06, 2-4pm BST) will mark my
first ever presentation at a forum! The topic: analysis of deduced peptide
sequences from 𝑁. π‘”π‘œπ‘›π‘œπ‘Ÿπ‘Ÿβ„Žπ‘œπ‘’π‘Žπ‘’ using the brilliant @PubMLST database.
Sign up (for free!) here: https://t.co/S15BUC4jnz(link is external) #PhD
#Neisseria @PhdVoice https://t.co/BCIqUdnZUF(link is external)




04 Jun 2021

RT @keithajolley(link is external) Reminder that the next PubMLST online event -
this time on sexually-transmitted diseases, is next Friday (June 11). Please
register if you wish to attend. https://t.co/QhircDDaac(link is external)




03 Jun 2021

The study is published in Lancet Digital Health. https://t.co/s1O3EhZFd4(link is
external)




27 May 2021

COVID-19 lockdowns significantly reduced transmission of invasive bacterial
diseases.

PubMLST infrastructure used for collating data for large study involving
reference laboratories in 26 countries. Press release at
https://t.co/BumwePi5Fb(link is external). https://t.co/wpMBLpL2e6(link is
external)




27 May 2021

A recording will be made available after the event on the PubMLST YouTube
channel. https://t.co/SJBeD216B2(link is external)




25 May 2021
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CONTACT

Get in touch with us if you have any comments or suggestions concerning the
website and the databases.


CITE US

Please citeΒ JolleyΒ et al.Β 2018 Wellcome Open ResΒ 3:124(link is external)Β if you
use data or analysis from PubMLST in your publications.


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