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Skip to content Product Product overview * COMPUTE CAPSULES Encapsulate code, data, environment, and generated results. * PIPELINES Connect, automate, parallelize, and scale computational work. * DATA Manage all data in the cloud, and from other sources, in a single place. * MODELS A unified environment for ML models with native MLflow integration. * LINEAGE GRAPH An automated, immutable record of result data provenance. * COLLECTIONS Gather and organize computational work to make it visible and findable. * APPS Use ready-made bioinformatics Apps, or quickly build your own. * ADMIN PANEL A single pane of glass to manage all users, resources, and data. Solutions Solutions overview By user By org type * COMPUTATIONAL SCIENTISTS Run analyses, build pipelines, and reproduce results in the cloud * IT & ENGINEERING A single pane of glass for self-service computational science * R&D LEADERSHIP Reproducible and traceable computational research with no lock-in * BENCH SCIENTISTS No-code access to powerful bioinformatics analyses and pipelines * BIOTECHS Computational science in the cloud.Self-service, scalable, reproducible. * PHARMACEUTICAL COMPANIES Reproducibility, traceability, compliance, and collaboration at scale * RESEARCH INSTITUTES Reproducible, accessible, and collaborative bioinformatics * UNIVERSITIES Rapid cloud setup and research integrity with no platform lock-in * FINANCIAL INSTITUTIONS Compliant machine learning model creation and management at scale. Resources Resource Overview * COMPBIO NEWSLETTER The latest computational biology and bioinformatics news * WEBINARS Register for upcoming webinars or watch on demand * BLOG The latest updates about our product and what we're working on * CASE STUDIES How our customers use Code Ocean for Computational Science * MODEL MAP Our interactive map of foundational models for biotech & pharma * USER DOCS Access our docs for step-by-step instructions * ADMIN GUIDE Access our guide for VPC administrators * FAQ Answers to the most frequently asked questions about Code Ocean OSL Go to Open Science Library * OSL FOR AUTHORS Login, sign up, documentation and support. * OSL FOR PUBLISHERS The industry standard for computational research integrity About About Overview * ABOUT CODE OCEAN Company information and what we're here to do * NEWS The latest company updates and media mentions * CAREERS Join us and change the future of computational science * RELEASE NOTES Find out about our latest features and functionality Book a Demo * Product * Compute Capsules * Pipelines * Models * Data * Lineage Graph * Collections * Apps * Admin Panel * API * Solutions * For computational scientists * For IT & engineering * For R&D leadership * For bench scientists * Resources * All Resources * Blog * Newsletter * Case Studies * Webinars * User docs * Admin guide * FAQ * OSL * Go to Open Science Library * OSL for Authors * OSL for Publishers * About * About Code Ocean * News * Careers * Release notes Book a Demo Computational science platform COLLABORATIVE, REPRODUCIBLE BIOINFORMATICS FOR R&D Set up environments, provision compute, run pipelines, and manage ML models. Traceable, compliant, reproducible, and installs into your existing cloud architecture. Book a Demo Product overview Trusted by thousands of computational scientists in Biotech and Pharma: It takes a lot of time to work manually, or to build and maintain bespoke systems Collaboration can be slow and painful within and between computational projects It’s hard to consistently reproduce result data across different compute environments COMPBIO & BIOINFORMATICS OFTEN NEEDS MANUAL PROCESSES & CUSTOM-BUILT SYSTEMS CODE OCEAN INSTALLS INTO YOUR EXISTING CLOUD ARCHITECTURES AND GETS EVERYONE ONTO THE SAME PAGE SET UP ENVIRONMENTS AND PROVISION COMPUTE Build what you need with built-in tools and automated Dockerfile generation. Develop in your preferred cloud workstation and attach data of any size. Deploy to the cloud in one click, and shut down automatically when idle. Read about Capsules COLLABORATE WITH OTHERS ON POWERFUL WORKFLOWS Develop computational research with others, from straightforward analysis to parallelized bioinformatics pipelines. Share and co-develop any Compute Capsule, Pipeline, or Data asset within your deployment. Read about pipelines GET AUTOMATED RESULT PROVENANCE AND REPRODUCIBILITY See the provenance of all results with the Lineage Graph and preserve everything needed for full reproducibility. All development tracked with Git, and no lock-in: export anything, at any time, and run it anywhere else. Read about the Lineage Graph * 01 * 02 * 03 * 04 * 05 What our customers say “Code Ocean opens the door to automating and scaling major aspects of the research process. With the Code Ocean platform, our scientists can focus on their core competencies, do more, think bigger, and achieve higher goals.” Yuval Kalugny VP Engineering, CytoReason What our customers say “The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we had a shared environment for collaboration.” Peter Carr Principal Platform Architect, Lantern Pharma What our customers say “Code Ocean's self-service capabilities make it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.” Dr. David Feng Director of Scientific Computing, Allen Institute What our customers say “Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.” Benjamin Haibe-Kains, Ph.D Senior Scientist, Princess Margaret Cancer Centre What our customers say “Code Ocean sped up our internal image pre-processing computational workflow by at least 10x, improving collaboration and productivity between our global teams ... removing the need for painful cloud computing infrastructure set up.” Dimitris Polychronopoulos Director of In Silico Biology, Ochre Bio What our customers say “Code Ocean opens the door to automating and scaling major aspects of the research process. With the Code Ocean platform, our scientists can focus on their core competencies, do more, think bigger, and achieve higher goals.” Yuval Kalugny VP Engineering, CytoReason What our customers say “The biggest win at Lantern is the pipeline we developed, and the value of Code Ocean was that it allowed the whole team to work together ... we had a shared environment for collaboration.” Peter Carr Principal Platform Architect, Lantern Pharma What our customers say “Code Ocean's self-service capabilities make it easy for our scientists to do their work reproducibly. New users to the platform can get far with just a little support, giving our engineers time to focus on domain-specific challenges.” Dr. David Feng Director of Scientific Computing, Allen Institute What our customers say “Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results.” Benjamin Haibe-Kains, Ph.D Senior Scientist, Princess Margaret Cancer Centre NEW: MACHINE LEARNING FEATURES We’re launching new features that make it easier for computational biologists, bioinformaticians, and ML engineers to work together in training, validating, and using ML models alongside their existing workflows. Read the announcement BUILT FOR COMPUTATIONAL SCIENCE * Data analysis DATA ANALYSIS Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility. * Data management DATA MANAGEMENT Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability. * Bioinformatics pipelines BIOINFORMATICS PIPELINES Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed. * ML models ML MODEL DEVELOPMENT Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage. * Multiomics MULTIOMICS Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility. * Imaging IMAGING Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage. * Cloud management CLOUD MANAGEMENT Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. * Data/model provenance DATA/MODEL PROVENANCE Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation. DATA ANALYSIS Use ready-made template Compute Capsules to analyze your data, develop your data analysis workflow in your preferred language and IDE using any open-source software, and take advantage of built-in containerization to guarantee reproducibility. DATA MANAGEMENT Manage your organization's data and control who has access to it. Built specifically to meet all FAIR principles, data management in Code Ocean uses custom metadata and controlled vocabularies to ensure consistency and improve searchability. BIOINFORMATICS PIPELINES Build, configure and monitor bioinformatics pipelines from scratch using a visual builder for easy set-up. Or, import from nf-core in one click for instant access to a curated set of best practice analysis pipelines. Runs on AWS Batch out-of-the-box, so your pipelines scale automatically. No setup needed. ML MODEL DEVELOPMENT Code Ocean is uniquely suited for Artificial Intelligence, Machine Learning, Deep Learning, and Generative AI. Install GPU-ready environments and provision GPU resources in a few clicks. Integration with MLFlow allows you to develop models, track parameters, manage models from development to production, while enjoying out-of-the-box reproducibility and lineage. MULTIOMICS Analyze and work with large multimodal datasets efficiently using scalable compute and storage resources, cached packages for R and Python, preloaded multiomics analysis software that works out of the box and full lineage and reproducibility. IMAGING Process images using a variety of tools: from dedicated desktop applications to custom-written deep learning pipelines, from a few individual files to petabyte-sized datasets. No DevOps required, always with lineage. CLOUD MANAGEMENT Code Ocean makes it easy to manage data and provision compute: CPUs, GPUs, and RAM. Assign flex machines and dedicated machines to manage what is available to your users. Spot instances, idleness detection, and automated shutdown help reduce cloud costs. DATA/MODEL PROVENANCE Keep track of all data and results with automated result provenance and lineage graph generation. Assess reproducibility with a visual representation of every Capsule, Pipeline, and Data asset involved in a computation. PRODUCT FEATURES Capsules Package your code, data and environment in a single object. Capsules Pipelines Connect, automate, parallelize, and scale computational work. Pipelines Models Integrated MLflow for tracking, registration, lineage, & inference. Models Data Manage all your Data assets in the cloud and from multiple sources. Data Lineage Graph An immutable record of how your results are generated. Lineage Graph Collections Gather and organize your work to make it visible and accessible. Collections Apps Use no-code bioinformatics apps, or build new ones from scratch. Apps Admin A single pane of glass for your entire computational R&D cloud. Admin panel WHO IS CODE OCEAN FOR? IT & Engineering Get computational teams up and running faster in the cloud, less dependent on IT and engineering resources, and using standardized computing environments across your organization. Learn more Computational Scientists Code Ocean makes it easy for computational scientists and bioinformaticians to perform analysis, build pipelines, and reproduce their results in a secure cloud-based environment. Learn more R&D Leadership Code Ocean creates an immutable, reproducible, and traceable scientific system of record. Prove what you discovered, when you discovered it, and how—without any additional work or platform lock-in. Learn more THE LATEST WEBINARS FROM CODE OCEAN Webinar Managing ML models in bioinformatics Watch webinar Webinar How to create reproducible environments for multi-omics Watch webinar SUBSCRIBE TO OUR NEWSLETTER Get the latest product updates, company news, and be the first to hear about upcoming webinars and events. 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