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* HOME * ABOUT * SERVICES * CONTACT * Blog STEPHEN CONNOR writer & blogger * UCINET SOFTWARE FOR MAC APR 18, 2022 ALPHABETIC Social Network Visualizer (SocNetV) is a cross-platform, user-friendly free software application for social network analysis and visualization. With SocNetV you can: Draw social networks with a few clicks on a virtual canvas, load field data from a file in a supported format ( GraphML, GraphViz, Adjacency, EdgeList, GML, Pajek, UCINET, etc. This means that there must be a problem in some specific Ucinet library compared to the new versions of Wine. Finally, running a virtualization software like Virtualbox with Windows is a solution obviously possible, but it reduces system efficiency - unless you have a machine with a lot of resources (for example, at least 16GB of ram). A comprehensive package for the analysis of social network data as well as other 1-mode and 2-mode data. Can read and write a multitude of differently formatted text files, as well as Excel files. C Library Cytoscape Plugin Graph database Java framework Java standalone MatLab toolbox Python R package Web based Windows UCINET FREE DOWNLOAD SocNetV: Social Network Analysis and Visualization Software From this page you can download the latest version of Social Network Visualizer. There are installation packages and binaries for the three major Operating Systems (Windows, Mac and Linux) as well as links for the source code. Install and Run UCINET on Intel-based OS X using Wine There are six steps to getting UCINET running smoothly on your Mac. It should take about an hour on a relatively current MacBook Pro with a good internet connection. Download UCINET 2. Change your security preferences 4. Download and install WineBottler 5. Product Centralities Platform License Ref ALLEGROGRAPH http://franz.com/agraph/allegrograph/ AllegroGraph® is a modern, high-performance, persistent graph database. AllegroGraph uses efficient memory utilization in combination with disk-based storage, enabling it to scale to billions of quads while maintaining superior performance. AllegroGraph supports SPARQL, RDFS++, and Prolog reasoning from numerous client applications. Betweenness centrality Closeness centrality Degree centrality Graph database (Linux) Free Commercial THE BRAIN CONNECTIVITY TOOLBOX (BCT) http://www.brain-connectivity-toolbox.net/ The BCT contains a large selection of complex network measures in Matlab. These measures are increasingly used to characterize structural and functional brain connectivity datasets. Edge betweenness centrality K-coreness centrality Node betweenness centrality Node-wise flow coefficients PageRank centrality Participation coefficient Shannon-entropy based diversity coefficient Shortcuts (erange) Spectral measure of centrality Subgraph centrality Within-module degree z-score MatLab toolbox Free Open source CENTIBIN http://centibin.ipk-gatersleben.de/ Bargaining centrality Centroid value Closeness centrality Closeness Vitality Current-Flow Betweenness centrality Current-Flow Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS Hubbell Index Katz Status Index PageRank Radiality centrality Shortest-Paths Betweenness centrality Stress centrality Java standalone Free CENTILIB http://centilib.ipk-gatersleben.de/ CentiLib is a Java-library for the computation and investigation of weighted and unweighted centralities in biological networks. Betweenness centrality Centroid centrality Closeness centrality Current-flow closeness centrality Current-flow betweenness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS Hubbel index Katz status index centrality PageRank Radiality centrality Stress centrality Java-library Vanted/Cytoscape Free Open source CENTISCAPE http://www.cbmc.it/~scardonig/centiscape/centiscape.php Find the most important nodes in a network, calculating centrality parameters for each node. Betweenness centrality (vertex/edge) Bridging centrality Centroid centrality Closeness centrality Eccentricity centrality Eigenvector centrality Radiality centrality Stress centrality Cytoscape Plugin Free CEPA https://cran.r-project.org/web/packages/CePa/ Centrality-based pathway enrichment. Use pathway topology information to assign weight to pathway nodes. Radiality centrality Reach centrality R Package Free CINNA https://cran.r-project.org/web/packages/CINNA/ It is an R package available on CRAN repository specialized for network centrality analysis. It is a tool for centrality comparison using dimensional reduction algorithms Dangalchev closeness centrality Group centrality Local bridging centrality Harmonic centrality Wiener index centrality R Package Free CYTO-HUBBA http://hub.iis.sinica.edu.tw/cytohubba/ cytoHubba is a Java plugin for Cytoscape, a facilitated platform for the analysis and visualization of molecular interaction networks based on web application, Hubba. Bottleneck (BN) Degree Density of Maximum Neighborhood Component (DMNC) Double Screening Scheme (DSS) of MNC || DMNC Edge Percolated Component (EPC) Maximum Neighborhood Component (MNC) Cytoscape plugin Free CYTONCA http://apps.cytoscape.org/apps/cytonca Providing calculation, evaluation and visualization analysis for several centralities of weighted and unweighted network. Betweenness centrality Closeness centrality Degree centrality Eigenvector centrality Information centrality Local Average Connectivity-based method (LAC) Network centrality (NC) Subgraph centrality Cytoscape Plugin Free EGONET http://escoladeredes.net/profiles/blogs/egonet-1 http://sourceforge.net/projects/egonet/ EgoNet (Egocentric Network Study Software) for the collection and analysis of egocentric social network data.[1] It helps the user to collect and analyse all the egocentric network data (all social network data of a website on the Internet), and provide general global network measures and data matrixes that can be used for further analysis by other software. Betweenness centrality Closeness centrality Degree centrality Java standalone Free FUNCTIONAL GENOMICS ASSISTANT (FUGA) http://code.google.com/p/fuga is a MATLAB toolbox for inference and analysis of biological and cellular networks. Clustering coefficient (parallelized) Eccentricity centrality Local efficiency Node betweenness centrality (parallelized) Node degree centrality Node eigenvector centrality MatLab toolbox Free Open source GEPHI https://gephi.github.io/ Java standalone Free Open Source GRAPHCHI http://graphlab.org/projects/graphchi.html https://github.com/GraphChi Disk-based large-scale graph computation. Personalized PageRank PageRank C++ Java framework Free Open Source GRAPHSTREAM http://graphstream-project.org/ GraphStream is a Java library for the modeling and analysis of dynamic graphs. You can generate, import, export, measure, layout and visualize them. Betweenness centrality Centroid Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality PageRank Java framework Free Open Source GRAPH-TOOL http://graph-tool.skewed.de/ Graph-tool is an efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). The core data structures and algorithms are implemented in C++. Authority and hub centralities Betweenness centrality Closeness centrality Eigentrust centrality Eigenvector centrality Katz centrality PageRank Trust transitivity Python Free Open source GTNA https://www.p2p.tu-darmstadt.de/research/gtna/ GTNA is a Java-based framework that allows for the graph-theoretic analysis of arbitrary network topologies. Betweenness centrality Local Clustering Coefficient PageRank Java framework Free Open source IGRAPH http://igraph.org/ Alpha centrality Average distance Betweenness centrality Bonacich Power centrality Closeness centrality Constraint centrality Degree centrality Eccentricity centrality Eigenvector centrality K-core decomposition Kleinberg centrality PageRank Strength centrality Structural Diversity Index Subgraph centrality R package Python C Library Free Open Source INFLOW http://www.orgnet.com/inflow3.html Software for Social Network Analysis & Organizational Network Analysis. Windows Commercial INTERFERENCE http://www.cbmc.it/~scardonig/interference/Interference.php A tool for virtual experimental network topological analysis. Betweenness centrality Centroid centrality Closeness centrality Eccentricity centrality Radiality centrality Stress centrality Cytoscape Plugin Free JGRAPHT-SNA https://bitbucket.org/sorend/jgrapht-sna JGraphT, Social Network Analysis addon. Brandes betweenness centrality Dangalchev closeness centrality Degree centrality Eigenvector centrality Freeman closeness centrality Fuzzy closeness centrality Geodesic KPath centrality Influence independence centrality Information centrality KPath centrality Latora closeness centrality OrtizArroyo Entropy centrality Random walk betweenness centrality Weighted closeness centrality Weighted degree centrality Java framework Free Open Source JUNG http://jung.sourceforge.net/ The Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. Average distance Betweenness centrality Barycenter centrality Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS HITS with priors Markov centrality PageRank PageRank with priors Random walk betweenness Java framework Free Open Source KEYPLAYER https://cran.r-project.org/web/packages/keyplayer/ Locating Key Players in Social Networks Computes group centrality scores and identifies the most central group of players in a network. Diffusion Centrality Fragmentation centrality Group Centraltiy M-reach Closeness Centrality M-reach Degree Centrality R package Free Open Source MODULAND http://www.linkgroup.hu/modules.php http://apps.cytoscape.org/apps/moduland Modularization method family offering modular hierarchies and adjustable overlaps. Community centrality Bridgeness Overlap Cytoscape Plugin Free MULTINET http://www.sfu.ca/personal/archives/richards/Multinet/Pages/multinet.htm MultiNet is a data analysis package that can be used for ordinary data (in which you have a file that has one line of data for each case) and for network data (in which there are two files -- the 'node' file describes the individuals and the 'link' file describes the connections between individuals). Betweenness centrality Closeness centrality Degree distributions Eigenvector centrality Influence (Out) centrality Influence (In) centrality Integration centrality Radiality centrality Windows shareware NEO4J https://github.com/neo4j/neo4j/.../centrality http://neo4j.com/ Neo4j is the world's leading graph database. People everywhere are using Neo4j to find graphs in every industry, connecting data to make sense of everything. Betweenness centrality Closeness centrality Eccentricity centrality Eigenvector centrality Eigenvector centrality arnoldi Eigenvector centrality power Shortest path based centrality Stress centrality Windows Commercial NETMINER http://www.netminer.com/ NetMiner is an premium software tool for Exploratory Analysis and Visualization of Network Data. Windows Commercial NETVIS MODULE http://www.netvis.org/ The NetVis Module is a free open source web-based tool to analyze and visualize social networks using data from csv files, online surveys, and dispersed teams. Betweenness centrality Closeness centrality Constraint Degree centrality Efficiency Hierarchy Reachability Web based Free Open source NETWORKANALYZER http://med.bioinf.mpi-inf.mpg.de/networkanalyzer/ NetworkAnalyzer is a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks. Betweenness centrality Closeness centrality Clustering coefficient Degree distributions Eccentricity Neighborhood connectivity Radiality Shared neighbors Shortest paths Stress centrality Topological coefficients Cytoscape plugin Free Open source NETWORKIT https://networkit.iti.kit.edu/ NetworKit is a growing open-source toolkit for high-performance network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. ApproxBetweenness centrality Betweenness centrality Closeness centrality Degree centrality Dynamic approximation of Betweenness centrality Eigenvector centrality Katz centrality, k-path centrality Local clustering coefficients PageRank Spanning edge centrality Spectral centrality Top-k Closeness (faster algorithm for computing only the top-k nodes with highest closeness) C++ Python interface through Cython Free NETWORKX https://networkx.github.io/ Degree degree_centrality(G) in_degree_centrality(G) out_degree_centrality(G) Eigenvector eigenvector_centrality(G[, max_iter, tol, …]) eigenvector_centrality_numpy(G[, weight, …]) katz_centrality(G[, alpha, beta, max_iter, …]) katz_centrality_numpy(G[, alpha, beta, …]) Closeness closeness_centrality(G[, u, distance, …]) incremental_closeness_centrality(G, edge[, …]) current_flow_closeness_centrality(G[, …]) information_centrality(G[, weight, dtype, …]) (Shortest Path) Betweenness betweenness_centrality(G[, k, normalized, …]) edge_betweenness_centrality(G[, k, …]) betweenness_centrality_subset(G, sources, …) edge_betweenness_centrality_subset(G, …[, …]) Current Flow Betweenness current_flow_betweenness_centrality(G[, …]) edge_current_flow_betweenness_centrality(G) approximate_current_flow_betweenness_centrality(G) current_flow_betweenness_centrality_subset(G, …) edge_current_flow_betweenness_centrality_subset(G, …) Communicability Betweenness communicability_betweenness_centrality(G[, …]) group_betweenness_centrality(G, C[, …]) group_closeness_centrality(G, S[, weight]) group_degree_centrality(G, S) group_in_degree_centrality(G, S) group_out_degree_centrality(G, S) Load load_centrality(G[, v, cutoff, normalized, …]) edge_load_centrality(G[, cutoff]) Subgraph subgraph_centrality(G) subgraph_centrality_exp(G) estrada_index(G) Harmonic Centrality harmonic_centrality(G[, nbunch, distance]) Dispersion dispersion(G[, u, v, normalized, alpha, b, c]) Reaching local_reaching_centrality(G, v[, paths, …]) global_reaching_centrality(G[, weight, …]) Percolation percolation_centrality(G[, attribute, …]) Second Order Centrality second_order_centrality(G) VoteRank voterank Python Free NODEXL http://nodexl.codeplex.com/ NodeXL: Network Overview, Discovery and Exploration for Excel. Betweenness centrality Closeness centrality Clustering coefficient Degree distributions Eigenvector centrality PageRank Windows Free Open source QGRAPH http://sachaepskamp.com/qgraph http://cran.r-project.org/web/packages/qgraph/ qgraph is a package that can be used to plot several types of graphs. It is mainly aimed at visualizing relationships in (psychometric) data as networks to create a clear picture of what the data actually looks like. Betweenness centrality Closeness centrality Degree centrality R package Free Open source PAJEK http://pajek.imfm.si/ Pajek - Program for Large Network Analysis. Betweenness centrality Burt’s measure of constraint (structural holes) Closeness centrality Clustering coefficient Degree distributions Hubs-Authorities Summing up Values of Line Windows for noncommercial use Free RBGL http://www.bioconductor.org/packages/release/bioc/html/RBGL.html A fairly extensive and comprehensive interface to the graph algorithms contained in the BOOST library. Betweenness centrality kCores R package Free Open source RINALYZER http://rinalyzer.de/ RINalyzer provides a number of important methods for analyzing and visualizing residue interaction networks (RINs). Current flow betweenness centrality Current flow closeness centrality Random walk betweenness centrality Random walk closeness centrality Shortest path betweenness centrality Shortest path closeness centrality Weighted degree centrality Cytoscape Plugin Free RINSPECTOR http://apps.cytoscape.org/apps/rinspector Combines centrality analyses with DynaMine flexibility predictions. Residue centrality Closeness centrality Betweenness centrality Cytoscape Plugin Free SANTA http://bioconductor.org/packages/release/bioc/html/SANTA.html Spatial Analysis of Network Associations. This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices. Knode Markov centrality R package Free Open source SBETOOLBOX https://github.com/biocoder/SBEToolbox/releases A Matlab Toolbox for Biological Network Analysis. Betweenness centrality Bridging centrality Closeness centrality Clustering Coefficient Degree centrality Eccentricity centrality Knotty centrality MatLab toolbox Free Open source SENTINEL VISUALIZER http://www.fmsasg.com/SocialNetworkAnalysis/ Betweenness centrality Closeness centrality Degree centrality Eigenvector centrality Hub and Authority Windows Commercial SNA http://CRAN.R-project.org/package=sna Betweenness centrality Bonacich power centrality Closeness centrality Degree centrality Eigenvector centrality Flow betweenness centrality Gil Schmidt power centrality index Harary graph centrality Information centrality K-core decomposition Load centrality Stress centrality R package Free Open Source SOCNETV http://socnetv.sourceforge.net/ Social Networks Visualizer (SocNetV) is a cross-platform, user-friendly tool for the analysis and visualization of Social Networks. Betweenness centrality Closeness centrality Degree centrality Degree Prestige (inDegree) Eccentricity centrality Influence Range Closeness centrality Information centrality PageRank Prestige Power centrality Proximity Prestige Stress centrality Windows, Linux, Mac Free Open Source TIDYGRAPH http://cran.r-project.org/web/packages/tidygraph/ tidygraph provides a consistent set of wrappers for all the centrality measures implemented in igraph for use inside dplyr::mutate() and other relevant verbs. All functions provided by tidygraph have a consistent naming scheme and automatically calls the function on the graph, returning a vector with measures ready to be added to the node data. Further tidygraph provides access to the netrankr engine for centrality calculations and define a number of centrality measures based on that, as well as provide a manual mode for specifying more-or-less any centrality score. centrality_alpha: Wrapper for igraph::alpha_centrality() centrality_authority: Wrapper for igraph::authority_score() centrality_betweenness: Wrapper for igraph::betweenness() and igraph::estimate_betweenness() centrality_power: Wrapper for igraph::power_centrality() centrality_closeness: Wrapper for igraph::closeness() and igraph::estimate_closeness() centrality_eigen: Wrapper for igraph::eigen_centrality() centrality_hub: Wrapper for igraph::hub_score() centrality_pagerank: Wrapper for igraph::page_rank() centrality_subgraph: Wrapper for igraph::subgraph_centrality() centrality_degree: Wrapper for igraph::degree() and igraph::strength() centrality_edge_betweenness: Wrapper for igraph::edge_betweenness() centrality_manual: Manually specify your centrality score using the netrankr framework (netrankr) centrality_closeness_harmonic: centrality based on inverse shortest path (netrankr) centrality_closeness_residual: centrality based on 2-to-the-power-of negative shortest path (netrankr) centrality_closeness_generalised: centrality based on alpha-to-the-power-of negative shortest path (netrankr) centrality_integration: centrality based on 1 - (x - 1)/max(x) transformation of shortest path (netrankr) centrality_communicability: centrality an exponential tranformation of walk counts (netrankr) centrality_communicability_odd: centrality an exponential tranformation of odd walk counts (netrankr) centrality_communicability_even: centrality an exponential tranformation of even walk counts (netrankr) centrality_subgraph_odd: subgraph centrality based on odd walk counts (netrankr) centrality_subgraph_even: subgraph centrality based on even walk counts (netrankr) centrality_katz: centrality based on walks penalizing distant nodes (netrankr) centrality_betweenness_network: Betweenness centrality based on network flow (netrankr) centrality_betweenness_current: Betweenness centrality based on current flow (netrankr) centrality_betweenness_communicability: Betweenness centrality based on communicability (netrankr) centrality_betweenness_rsp_simple: Betweenness centrality based on simple randomised shortest path dependencies (netrankr) centrality_betweenness_rsp_net: Betweenness centrality based on net randomised shortest path dependencies (netrankr) centrality_information: centrality based on inverse sum of resistance distance between nodes (netrankr) centrality_decay: based on a power transformation of the shortest path (netrankr) centrality_random_walk: centrality based on the inverse sum of expected random walk length between nodes (netrankr) centrality_expected: Expected centrality ranking based on exact rank probability (netrankr) R package Free Open Source TNET http://cran.r-project.org/web/packages/tnet/ R package for analyzing weighted, two-mode, and longitudinal networks. Betweenness centrality (weighted network) Closeness centrality (weighted network) Degree centrality (two-mode network) Degree centrality (weighted network) Distance (two-mode network) Distance (weighted network) R package Free Open Source UCINET https://sites.google.com/site/ucinetsoftware/ UCINET 6 for Windows is a software package for the analysis of social network data. Betweenness centrality Bonacich power centrality Closeness centrality Degree centrality Distance weighted fragmentation Eigenvector centrality Flow betweenness centrality Fragmentation centrality Hubs and authorities centrality K-step reach centrality Information centrality Political independence index (pii) Proximal betweenness centrality Reverse closeness centrality Windows Commercial VISONE http://visone.info/ Visone is a long-term research project (team), in which models and algorithms to integrate and advance the analysis and visualization of social networks are being developed. Betweenness centrality Closeness centrality Current-flow centralities Degree centrality Eccentricity centrality Eigenvector centrality Hubs and authorities Pagerank Radiality centrality Status Stress centrality Java standalone Free for academic and research WEBGRAPH http://webgraph.di.unimi.it/ WebGraph is a framework for graph compression aimed at studying web graphs. Betweenness centrality Closeness centrality Lin's centrality Harmonic centrality Reachable Java framework Free WGCNA http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/ WGCNA: an R package for weighted correlation network analysis. R package Free Open source WOLFRAM http://www.wolfram.com/mathematica/ http://www.wolframalpha.com/ http://reference.wolfram.com/language/guide/GraphMeasures.html Betweenness centrality Degree centrality Closeness centrality Eccentricity centrality Edge Betweenness centrality Edge Connectivity Eigenvector centrality HITS centrality Katz centrality Local clustering coefficient PageRank centrality Radiality centrality Status centrality SALSA Vertex Connectivity Windows Commercial UCINET VERSION REFERENCES * KONGANTI, K., WANG, G., YANG, E., CAI, J. J., KONGANTI, K., WANG, G., YANG, E. & CAI, J. J. 2013. SBEToolbox: A Matlab Toolbox for Biological Network Analysis. Evolutionary Bioinformatics, 9, 355-362. DOI: 10.4137/EBO.S12012 * DROZDOV, I., OUZOUNIS, C. A., SHAH, A. M. & TSOKA, S. 2011. Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks. BMC research notes, 4, 462. DOI: 10.1186/1756-0500-4-462 * JUNKER, B. H., KOSCHÜTZKI, D. & SCHREIBER, F. 2006. Exploration of biological network centralities with CentiBiN. BMC bioinformatics, 7, 219. DOI: 10.1186/1471-2105-7-219 * RUBINOV, M. & SPORNS, O. 2010. Complex network measures of brain connectivity: Uses and interpretations. NeuroImage, 52, 1059-1069. DOI: 10.1016/j.neuroimage.2009.10.003 * CSARDI, G. & NEPUSZ, T. 2006. The igraph software package for complex network research. InterJournal, Complex Systems, 1695. [http://igraph.org] * CARTER T. BUTTS (2014). sna: Tools for Social Network Analysis. R package version 2.3-2. http://CRAN.R-project.org/package=sna * A HAGBERG, D. S., P SWART. Exploring Network Structure, Dynamics, and Function using NetworkX. In: G VAROQUAUX, T. V., J MILLMAN, ed. Proceedings of the 7th Python in Science conference (SciPy 2008), 2008. 11-15. * BASTIAN, M., HEYMANN, S. & JACOMY, M. 2009. Gephi: An Open Source Software for Exploring and Manipulating Networks. * DONCHEVA, N. T., KLEIN, K., DOMINGUES, F. S. & ALBRECHT, M. 2011. Analyzing and visualizing residue networks of protein structures. Trends in Biochemical Sciences, 36, 179-182. DOI: 10.1016/j.tibs.2011.01.002 * BORGATTI, S. P., EVERETT, M. G. & FREEMAN, L. C. 2002. Ucinet for Windows: Software for social network analysis. Harvard, MA: Analytic Technologies. * BOLDI, P. & VIGNA, S. 2004. The webgraph framework I: compression techniques. Proceedings of the 13th international conference on World Wide Web. New York, NY, USA: ACM. DOI: 10.1145/988672.988752 * Yu Tang, Min Li, Jianxin Wang, CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological network * SCHILLER, B., BRADLER, D., SCHWEIZER, I., M, M., #252, HLH, #228, USER & STRUFE, T. 2010. GTNA: a framework for the graph-theoretic network analysis. Proceedings of the 2010 Spring Simulation Multiconference. Orlando, Florida: Society for Computer Simulation International. DOI: 10.1145/1878537.1878653 * ASSENOV, Y., RAMÍREZ, F., SCHELHORN, S.-E., LENGAUER, T. & ALBRECHT, M. 2008. Computing topological parameters of biological networks. Bioinformatics, 24, 282-284. * LANGFELDER, P. & HORVATH, S. 2008. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 9, 559. PMID: 19114008DOI: 10.1186/1471-2105-9-559 * V. Batagelj, A. Mrvar: Pajek – Program for Large Network Analysis. Home page: http://vlado.fmf.uni-lj.si/pub/networks/pajek/ * Smith, M., Milic-Frayling, N., Shneiderman, B., Mendes Rodrigues, E., Leskovec, J., Dunne, C., (2010). NodeXL: a free and open network overview, discovery and exploration add-in for Excel 2007/2010, http://nodexl.codeplex.com/ from the Social Media Research Foundation, http://www.smrfoundation.org * CHEN, S.-H., CHIN, C.-H., WU, H.-H., HO, C.-W., KO, M.-T. & LIN, C.-Y. cyto-Hubba: A Cytoscape plug-in for hub object analysis in network biology. 20th International Conference on Genome Informatics, 2009. * SCARDONI, G., PETTERLINI, M. & LAUDANNA, C. 2009. Analyzing biological network parameters with CentiScaPe. Bioinformatics, 25, 2857-2859. DOI: 10.1093/bioinformatics/btp517 * GRÄßLER, J., KOSCHÜTZKI, D. & SCHREIBER, F. 2012. CentiLib: comprehensive analysis and exploration of network centralities. Bioinformatics, 28, 1178-1179. DOI: 10.1093/bioinformatics/bts106 * BRANDES, U. W. D.(2003).“Visone. Analysis and Visualization of Social Networks”. Special Issue on Graph Drawing Software, Springer-Verlag, Springer Series in Mathematics and Visualization, Springer-Verlag, págs, 321-340. * Cornish A and Markowetz F (2014). SANTA: Spatial Analysis of Network Associations. R package version 1.4.0. * SZALAY-BEKŐ, M., PALOTAI, R., SZAPPANOS, B., KOVÁCS, I. A., PAPP, B. & CSERMELY, P. 2012. ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. Bioinformatics, 28, 2202-2204. ALPHABETIC C Library Cytoscape Plugin Graph database Java framework Java standalone MatLab toolbox Python R package Web based Windows UCINET SOCIAL NETWORK ANALYSIS Product Centralities Platform License Ref ALLEGROGRAPH http://franz.com/agraph/allegrograph/ AllegroGraph® is a modern, high-performance, persistent graph database. AllegroGraph uses efficient memory utilization in combination with disk-based storage, enabling it to scale to billions of quads while maintaining superior performance. AllegroGraph supports SPARQL, RDFS++, and Prolog reasoning from numerous client applications. Betweenness centrality Closeness centrality Degree centrality Graph database (Linux) Free Commercial THE BRAIN CONNECTIVITY TOOLBOX (BCT) http://www.brain-connectivity-toolbox.net/ The BCT contains a large selection of complex network measures in Matlab. These measures are increasingly used to characterize structural and functional brain connectivity datasets. Edge betweenness centrality K-coreness centrality Node betweenness centrality Node-wise flow coefficients PageRank centrality Participation coefficient Shannon-entropy based diversity coefficient Shortcuts (erange) Spectral measure of centrality Subgraph centrality Within-module degree z-score MatLab toolbox Free Open source CENTIBIN http://centibin.ipk-gatersleben.de/ Bargaining centrality Centroid value Closeness centrality Closeness Vitality Current-Flow Betweenness centrality Current-Flow Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS Hubbell Index Katz Status Index PageRank Radiality centrality Shortest-Paths Betweenness centrality Stress centrality Java standalone Free CENTILIB http://centilib.ipk-gatersleben.de/ CentiLib is a Java-library for the computation and investigation of weighted and unweighted centralities in biological networks. Betweenness centrality Centroid centrality Closeness centrality Current-flow closeness centrality Current-flow betweenness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS Hubbel index Katz status index centrality PageRank Radiality centrality Stress centrality Java-library Vanted/Cytoscape Free Open source CENTISCAPE http://www.cbmc.it/~scardonig/centiscape/centiscape.php Find the most important nodes in a network, calculating centrality parameters for each node. Betweenness centrality (vertex/edge) Bridging centrality Centroid centrality Closeness centrality Eccentricity centrality Eigenvector centrality Radiality centrality Stress centrality Cytoscape Plugin Free CEPA https://cran.r-project.org/web/packages/CePa/ Centrality-based pathway enrichment. Use pathway topology information to assign weight to pathway nodes. Radiality centrality Reach centrality R Package Free CINNA https://cran.r-project.org/web/packages/CINNA/ It is an R package available on CRAN repository specialized for network centrality analysis. It is a tool for centrality comparison using dimensional reduction algorithms Dangalchev closeness centrality Group centrality Local bridging centrality Harmonic centrality Wiener index centrality R Package Free CYTO-HUBBA http://hub.iis.sinica.edu.tw/cytohubba/ cytoHubba is a Java plugin for Cytoscape, a facilitated platform for the analysis and visualization of molecular interaction networks based on web application, Hubba. Bottleneck (BN) Degree Density of Maximum Neighborhood Component (DMNC) Double Screening Scheme (DSS) of MNC || DMNC Edge Percolated Component (EPC) Maximum Neighborhood Component (MNC) Cytoscape plugin Free CYTONCA http://apps.cytoscape.org/apps/cytonca Providing calculation, evaluation and visualization analysis for several centralities of weighted and unweighted network. Betweenness centrality Closeness centrality Degree centrality Eigenvector centrality Information centrality Local Average Connectivity-based method (LAC) Network centrality (NC) Subgraph centrality Cytoscape Plugin Free EGONET http://escoladeredes.net/profiles/blogs/egonet-1 http://sourceforge.net/projects/egonet/ EgoNet (Egocentric Network Study Software) for the collection and analysis of egocentric social network data.[1] It helps the user to collect and analyse all the egocentric network data (all social network data of a website on the Internet), and provide general global network measures and data matrixes that can be used for further analysis by other software. Betweenness centrality Closeness centrality Degree centrality Java standalone Free FUNCTIONAL GENOMICS ASSISTANT (FUGA) http://code.google.com/p/fuga is a MATLAB toolbox for inference and analysis of biological and cellular networks. Clustering coefficient (parallelized) Eccentricity centrality Local efficiency Node betweenness centrality (parallelized) Node degree centrality Node eigenvector centrality MatLab toolbox Free Open source GEPHI https://gephi.github.io/ Java standalone Free Open Source GRAPHCHI http://graphlab.org/projects/graphchi.html https://github.com/GraphChi Disk-based large-scale graph computation. Personalized PageRank PageRank C++ Java framework Free Open Source GRAPHSTREAM http://graphstream-project.org/ GraphStream is a Java library for the modeling and analysis of dynamic graphs. You can generate, import, export, measure, layout and visualize them. Betweenness centrality Centroid Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality PageRank Java framework Free Open Source GRAPH-TOOL http://graph-tool.skewed.de/ Graph-tool is an efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). The core data structures and algorithms are implemented in C++. Authority and hub centralities Betweenness centrality Closeness centrality Eigentrust centrality Eigenvector centrality Katz centrality PageRank Trust transitivity Python Free Open source GTNA https://www.p2p.tu-darmstadt.de/research/gtna/ GTNA is a Java-based framework that allows for the graph-theoretic analysis of arbitrary network topologies. Betweenness centrality Local Clustering Coefficient PageRank Java framework Free Open source IGRAPH http://igraph.org/ Alpha centrality Average distance Betweenness centrality Bonacich Power centrality Closeness centrality Constraint centrality Degree centrality Eccentricity centrality Eigenvector centrality K-core decomposition Kleinberg centrality PageRank Strength centrality Structural Diversity Index Subgraph centrality R package Python C Library Free Open Source INFLOW http://www.orgnet.com/inflow3.html Software for Social Network Analysis & Organizational Network Analysis. Windows Commercial INTERFERENCE http://www.cbmc.it/~scardonig/interference/Interference.php A tool for virtual experimental network topological analysis. Betweenness centrality Centroid centrality Closeness centrality Eccentricity centrality Radiality centrality Stress centrality Cytoscape Plugin Free JGRAPHT-SNA https://bitbucket.org/sorend/jgrapht-sna JGraphT, Social Network Analysis addon. Brandes betweenness centrality Dangalchev closeness centrality Degree centrality Eigenvector centrality Freeman closeness centrality Fuzzy closeness centrality Geodesic KPath centrality Influence independence centrality Information centrality KPath centrality Latora closeness centrality OrtizArroyo Entropy centrality Random walk betweenness centrality Weighted closeness centrality Weighted degree centrality Java framework Free Open Source JUNG http://jung.sourceforge.net/ The Java Universal Network/Graph Framework--is a software library that provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. Average distance Betweenness centrality Barycenter centrality Closeness centrality Degree centrality Eccentricity centrality Eigenvector centrality HITS HITS with priors Markov centrality PageRank PageRank with priors Random walk betweenness Java framework Free Open Source KEYPLAYER https://cran.r-project.org/web/packages/keyplayer/ Locating Key Players in Social Networks Computes group centrality scores and identifies the most central group of players in a network. Diffusion Centrality Fragmentation centrality Group Centraltiy M-reach Closeness Centrality M-reach Degree Centrality R package Free Open Source MODULAND http://www.linkgroup.hu/modules.php http://apps.cytoscape.org/apps/moduland Modularization method family offering modular hierarchies and adjustable overlaps. Community centrality Bridgeness Overlap Cytoscape Plugin Free MULTINET http://www.sfu.ca/personal/archives/richards/Multinet/Pages/multinet.htm MultiNet is a data analysis package that can be used for ordinary data (in which you have a file that has one line of data for each case) and for network data (in which there are two files -- the 'node' file describes the individuals and the 'link' file describes the connections between individuals). Betweenness centrality Closeness centrality Degree distributions Eigenvector centrality Influence (Out) centrality Influence (In) centrality Integration centrality Radiality centrality Windows shareware NEO4J https://github.com/neo4j/neo4j/.../centrality http://neo4j.com/ Neo4j is the world's leading graph database. People everywhere are using Neo4j to find graphs in every industry, connecting data to make sense of everything. Betweenness centrality Closeness centrality Eccentricity centrality Eigenvector centrality Eigenvector centrality arnoldi Eigenvector centrality power Shortest path based centrality Stress centrality Windows Commercial NETMINER http://www.netminer.com/ NetMiner is an premium software tool for Exploratory Analysis and Visualization of Network Data. Windows Commercial NETVIS MODULE http://www.netvis.org/ The NetVis Module is a free open source web-based tool to analyze and visualize social networks using data from csv files, online surveys, and dispersed teams. Betweenness centrality Closeness centrality Constraint Degree centrality Efficiency Hierarchy Reachability Web based Free Open source NETWORKANALYZER http://med.bioinf.mpi-inf.mpg.de/networkanalyzer/ NetworkAnalyzer is a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks. Betweenness centrality Closeness centrality Clustering coefficient Degree distributions Eccentricity Neighborhood connectivity Radiality Shared neighbors Shortest paths Stress centrality Topological coefficients Cytoscape plugin Free Open source NETWORKIT https://networkit.iti.kit.edu/ NetworKit is a growing open-source toolkit for high-performance network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. ApproxBetweenness centrality Betweenness centrality Closeness centrality Degree centrality Dynamic approximation of Betweenness centrality Eigenvector centrality Katz centrality, k-path centrality Local clustering coefficients PageRank Spanning edge centrality Spectral centrality Top-k Closeness (faster algorithm for computing only the top-k nodes with highest closeness) C++ Python interface through Cython Free NETWORKX https://networkx.github.io/ Degree degree_centrality(G) in_degree_centrality(G) out_degree_centrality(G) Eigenvector eigenvector_centrality(G[, max_iter, tol, …]) eigenvector_centrality_numpy(G[, weight, …]) katz_centrality(G[, alpha, beta, max_iter, …]) katz_centrality_numpy(G[, alpha, beta, …]) Closeness closeness_centrality(G[, u, distance, …]) incremental_closeness_centrality(G, edge[, …]) current_flow_closeness_centrality(G[, …]) information_centrality(G[, weight, dtype, …]) (Shortest Path) Betweenness betweenness_centrality(G[, k, normalized, …]) edge_betweenness_centrality(G[, k, …]) betweenness_centrality_subset(G, sources, …) edge_betweenness_centrality_subset(G, …[, …]) Current Flow Betweenness current_flow_betweenness_centrality(G[, …]) edge_current_flow_betweenness_centrality(G) approximate_current_flow_betweenness_centrality(G) current_flow_betweenness_centrality_subset(G, …) edge_current_flow_betweenness_centrality_subset(G, …) Communicability Betweenness communicability_betweenness_centrality(G[, …]) group_betweenness_centrality(G, C[, …]) group_closeness_centrality(G, S[, weight]) group_degree_centrality(G, S) group_in_degree_centrality(G, S) group_out_degree_centrality(G, S) Load load_centrality(G[, v, cutoff, normalized, …]) edge_load_centrality(G[, cutoff]) Subgraph subgraph_centrality(G) subgraph_centrality_exp(G) estrada_index(G) Harmonic Centrality harmonic_centrality(G[, nbunch, distance]) Dispersion dispersion(G[, u, v, normalized, alpha, b, c]) Reaching local_reaching_centrality(G, v[, paths, …]) global_reaching_centrality(G[, weight, …]) Percolation percolation_centrality(G[, attribute, …]) Second Order Centrality second_order_centrality(G) VoteRank voterank Python Free NODEXL http://nodexl.codeplex.com/ NodeXL: Network Overview, Discovery and Exploration for Excel. Betweenness centrality Closeness centrality Clustering coefficient Degree distributions Eigenvector centrality PageRank Windows Free Open source QGRAPH http://sachaepskamp.com/qgraph http://cran.r-project.org/web/packages/qgraph/ qgraph is a package that can be used to plot several types of graphs. It is mainly aimed at visualizing relationships in (psychometric) data as networks to create a clear picture of what the data actually looks like. Betweenness centrality Closeness centrality Degree centrality R package Free Open source PAJEK http://pajek.imfm.si/ Pajek - Program for Large Network Analysis. Betweenness centrality Burt’s measure of constraint (structural holes) Closeness centrality Clustering coefficient Degree distributions Hubs-Authorities Summing up Values of Line Windows for noncommercial use Free RBGL http://www.bioconductor.org/packages/release/bioc/html/RBGL.html A fairly extensive and comprehensive interface to the graph algorithms contained in the BOOST library. Betweenness centrality kCores R package Free Open source RINALYZER http://rinalyzer.de/ RINalyzer provides a number of important methods for analyzing and visualizing residue interaction networks (RINs). Current flow betweenness centrality Current flow closeness centrality Random walk betweenness centrality Random walk closeness centrality Shortest path betweenness centrality Shortest path closeness centrality Weighted degree centrality Cytoscape Plugin Free RINSPECTOR http://apps.cytoscape.org/apps/rinspector Combines centrality analyses with DynaMine flexibility predictions. Residue centrality Closeness centrality Betweenness centrality Cytoscape Plugin Free SANTA http://bioconductor.org/packages/release/bioc/html/SANTA.html Spatial Analysis of Network Associations. This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices. Knode Markov centrality R package Free Open source SBETOOLBOX https://github.com/biocoder/SBEToolbox/releases A Matlab Toolbox for Biological Network Analysis. Betweenness centrality Bridging centrality Closeness centrality Clustering Coefficient Degree centrality Eccentricity centrality Knotty centrality MatLab toolbox Free Open source SENTINEL VISUALIZER http://www.fmsasg.com/SocialNetworkAnalysis/ Betweenness centrality Closeness centrality Degree centrality Eigenvector centrality Hub and Authority Windows Commercial SNA http://CRAN.R-project.org/package=sna Betweenness centrality Bonacich power centrality Closeness centrality Degree centrality Eigenvector centrality Flow betweenness centrality Gil Schmidt power centrality index Harary graph centrality Information centrality K-core decomposition Load centrality Stress centrality R package Free Open Source SOCNETV http://socnetv.sourceforge.net/ Social Networks Visualizer (SocNetV) is a cross-platform, user-friendly tool for the analysis and visualization of Social Networks. Betweenness centrality Closeness centrality Degree centrality Degree Prestige (inDegree) Eccentricity centrality Influence Range Closeness centrality Information centrality PageRank Prestige Power centrality Proximity Prestige Stress centrality Windows, Linux, Mac Free Open Source TIDYGRAPH http://cran.r-project.org/web/packages/tidygraph/ tidygraph provides a consistent set of wrappers for all the centrality measures implemented in igraph for use inside dplyr::mutate() and other relevant verbs. All functions provided by tidygraph have a consistent naming scheme and automatically calls the function on the graph, returning a vector with measures ready to be added to the node data. Further tidygraph provides access to the netrankr engine for centrality calculations and define a number of centrality measures based on that, as well as provide a manual mode for specifying more-or-less any centrality score. centrality_alpha: Wrapper for igraph::alpha_centrality() centrality_authority: Wrapper for igraph::authority_score() centrality_betweenness: Wrapper for igraph::betweenness() and igraph::estimate_betweenness() centrality_power: Wrapper for igraph::power_centrality() centrality_closeness: Wrapper for igraph::closeness() and igraph::estimate_closeness() centrality_eigen: Wrapper for igraph::eigen_centrality() centrality_hub: Wrapper for igraph::hub_score() centrality_pagerank: Wrapper for igraph::page_rank() centrality_subgraph: Wrapper for igraph::subgraph_centrality() centrality_degree: Wrapper for igraph::degree() and igraph::strength() centrality_edge_betweenness: Wrapper for igraph::edge_betweenness() centrality_manual: Manually specify your centrality score using the netrankr framework (netrankr) centrality_closeness_harmonic: centrality based on inverse shortest path (netrankr) centrality_closeness_residual: centrality based on 2-to-the-power-of negative shortest path (netrankr) centrality_closeness_generalised: centrality based on alpha-to-the-power-of negative shortest path (netrankr) centrality_integration: centrality based on 1 - (x - 1)/max(x) transformation of shortest path (netrankr) centrality_communicability: centrality an exponential tranformation of walk counts (netrankr) centrality_communicability_odd: centrality an exponential tranformation of odd walk counts (netrankr) centrality_communicability_even: centrality an exponential tranformation of even walk counts (netrankr) centrality_subgraph_odd: subgraph centrality based on odd walk counts (netrankr) centrality_subgraph_even: subgraph centrality based on even walk counts (netrankr) centrality_katz: centrality based on walks penalizing distant nodes (netrankr) centrality_betweenness_network: Betweenness centrality based on network flow (netrankr) centrality_betweenness_current: Betweenness centrality based on current flow (netrankr) centrality_betweenness_communicability: Betweenness centrality based on communicability (netrankr) centrality_betweenness_rsp_simple: Betweenness centrality based on simple randomised shortest path dependencies (netrankr) centrality_betweenness_rsp_net: Betweenness centrality based on net randomised shortest path dependencies (netrankr) centrality_information: centrality based on inverse sum of resistance distance between nodes (netrankr) centrality_decay: based on a power transformation of the shortest path (netrankr) centrality_random_walk: centrality based on the inverse sum of expected random walk length between nodes (netrankr) centrality_expected: Expected centrality ranking based on exact rank probability (netrankr) R package Free Open Source TNET http://cran.r-project.org/web/packages/tnet/ R package for analyzing weighted, two-mode, and longitudinal networks. Betweenness centrality (weighted network) Closeness centrality (weighted network) Degree centrality (two-mode network) Degree centrality (weighted network) Distance (two-mode network) Distance (weighted network) R package Free Open Source UCINET https://sites.google.com/site/ucinetsoftware/ UCINET 6 for Windows is a software package for the analysis of social network data. Betweenness centrality Bonacich power centrality Closeness centrality Degree centrality Distance weighted fragmentation Eigenvector centrality Flow betweenness centrality Fragmentation centrality Hubs and authorities centrality K-step reach centrality Information centrality Political independence index (pii) Proximal betweenness centrality Reverse closeness centrality Windows Commercial VISONE http://visone.info/ Visone is a long-term research project (team), in which models and algorithms to integrate and advance the analysis and visualization of social networks are being developed. Betweenness centrality Closeness centrality Current-flow centralities Degree centrality Eccentricity centrality Eigenvector centrality Hubs and authorities Pagerank Radiality centrality Status Stress centrality Java standalone Free for academic and research WEBGRAPH http://webgraph.di.unimi.it/ WebGraph is a framework for graph compression aimed at studying web graphs. Betweenness centrality Closeness centrality Lin's centrality Harmonic centrality Reachable Java framework Free WGCNA http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/ WGCNA: an R package for weighted correlation network analysis. R package Free Open source WOLFRAM http://www.wolfram.com/mathematica/ http://www.wolframalpha.com/ http://reference.wolfram.com/language/guide/GraphMeasures.html Betweenness centrality Degree centrality Closeness centrality Eccentricity centrality Edge Betweenness centrality Edge Connectivity Eigenvector centrality HITS centrality Katz centrality Local clustering coefficient PageRank centrality Radiality centrality Status centrality SALSA Vertex Connectivity Windows Commercial REFERENCES UCINET SOFTWARE FOR MAC OS * KONGANTI, K., WANG, G., YANG, E., CAI, J. J., KONGANTI, K., WANG, G., YANG, E. & CAI, J. J. 2013. SBEToolbox: A Matlab Toolbox for Biological Network Analysis. Evolutionary Bioinformatics, 9, 355-362. DOI: 10.4137/EBO.S12012 * DROZDOV, I., OUZOUNIS, C. A., SHAH, A. M. & TSOKA, S. 2011. Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks. BMC research notes, 4, 462. DOI: 10.1186/1756-0500-4-462 * JUNKER, B. H., KOSCHÜTZKI, D. & SCHREIBER, F. 2006. Exploration of biological network centralities with CentiBiN. BMC bioinformatics, 7, 219. DOI: 10.1186/1471-2105-7-219 * RUBINOV, M. & SPORNS, O. 2010. Complex network measures of brain connectivity: Uses and interpretations. NeuroImage, 52, 1059-1069. DOI: 10.1016/j.neuroimage.2009.10.003 * CSARDI, G. & NEPUSZ, T. 2006. The igraph software package for complex network research. InterJournal, Complex Systems, 1695. [http://igraph.org] * CARTER T. BUTTS (2014). sna: Tools for Social Network Analysis. R package version 2.3-2. http://CRAN.R-project.org/package=sna * A HAGBERG, D. S., P SWART. Exploring Network Structure, Dynamics, and Function using NetworkX. In: G VAROQUAUX, T. V., J MILLMAN, ed. Proceedings of the 7th Python in Science conference (SciPy 2008), 2008. 11-15. * BASTIAN, M., HEYMANN, S. & JACOMY, M. 2009. Gephi: An Open Source Software for Exploring and Manipulating Networks. * DONCHEVA, N. T., KLEIN, K., DOMINGUES, F. S. & ALBRECHT, M. 2011. Analyzing and visualizing residue networks of protein structures. Trends in Biochemical Sciences, 36, 179-182. DOI: 10.1016/j.tibs.2011.01.002 * BORGATTI, S. P., EVERETT, M. G. & FREEMAN, L. C. 2002. Ucinet for Windows: Software for social network analysis. Harvard, MA: Analytic Technologies. * BOLDI, P. & VIGNA, S. 2004. The webgraph framework I: compression techniques. Proceedings of the 13th international conference on World Wide Web. New York, NY, USA: ACM. DOI: 10.1145/988672.988752 * Yu Tang, Min Li, Jianxin Wang, CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological network * SCHILLER, B., BRADLER, D., SCHWEIZER, I., M, M., #252, HLH, #228, USER & STRUFE, T. 2010. GTNA: a framework for the graph-theoretic network analysis. Proceedings of the 2010 Spring Simulation Multiconference. Orlando, Florida: Society for Computer Simulation International. DOI: 10.1145/1878537.1878653 * ASSENOV, Y., RAMÍREZ, F., SCHELHORN, S.-E., LENGAUER, T. & ALBRECHT, M. 2008. Computing topological parameters of biological networks. Bioinformatics, 24, 282-284. * LANGFELDER, P. & HORVATH, S. 2008. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 9, 559. PMID: 19114008DOI: 10.1186/1471-2105-9-559 * V. Batagelj, A. Mrvar: Pajek – Program for Large Network Analysis. Home page: http://vlado.fmf.uni-lj.si/pub/networks/pajek/ * Smith, M., Milic-Frayling, N., Shneiderman, B., Mendes Rodrigues, E., Leskovec, J., Dunne, C., (2010). NodeXL: a free and open network overview, discovery and exploration add-in for Excel 2007/2010, http://nodexl.codeplex.com/ from the Social Media Research Foundation, http://www.smrfoundation.org * CHEN, S.-H., CHIN, C.-H., WU, H.-H., HO, C.-W., KO, M.-T. & LIN, C.-Y. cyto-Hubba: A Cytoscape plug-in for hub object analysis in network biology. 20th International Conference on Genome Informatics, 2009. * SCARDONI, G., PETTERLINI, M. & LAUDANNA, C. 2009. Analyzing biological network parameters with CentiScaPe. Bioinformatics, 25, 2857-2859. DOI: 10.1093/bioinformatics/btp517 * GRÄßLER, J., KOSCHÜTZKI, D. & SCHREIBER, F. 2012. CentiLib: comprehensive analysis and exploration of network centralities. Bioinformatics, 28, 1178-1179. DOI: 10.1093/bioinformatics/bts106 * BRANDES, U. W. D.(2003).“Visone. Analysis and Visualization of Social Networks”. Special Issue on Graph Drawing Software, Springer-Verlag, Springer Series in Mathematics and Visualization, Springer-Verlag, págs, 321-340. * Cornish A and Markowetz F (2014). SANTA: Spatial Analysis of Network Associations. R package version 1.4.0. * SZALAY-BEKŐ, M., PALOTAI, R., SZAPPANOS, B., KOVÁCS, I. A., PAPP, B. & CSERMELY, P. 2012. ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. Bioinformatics, 28, 2202-2204. * Comments (0) * ADOBE PREMIERE PRO CC SHORTCUTS MAC APR 18, 2022 Each major version of Premiere Pro has its own copy of settings files. For example, Premiere Pro CC 7.x uses a '7.0' directory to store the settings file while the 2014 version of Premiere Pro CC uses a '8.0' directory. When you upgrade to the latest version from Premiere Pro CC 7.x, your sync settings are automatically migrated to the new version. 1. If you use Adobe Premiere Pro often, then knowing all the keyboard shortcuts is one of the quickest ways to get your work done on time. From getting a birds-eye view of your timeline to trimming. 2. Use this formatted document to print a complete list of shortcuts for Premiere Pro CC for Mac. 09.11.17 By Dylan Osborn Most applications have keyboard shortcuts to save you mouse clicks. But video editors know that using shortcuts for repeated actions like playing footage, setting in and out points, inserting, and trimming, are vital to getting that cut done on deadline. Adobe Premiere Pro also has hundreds of commands that aren’t mapped by default, so spending a few minutes in the Keyboard Shortcuts window to map your custom layout can turn more of your editing time into creative time. Here are 10 default shortcuts that you should know, and 10 shortcuts that are worth mapping, from our editor’s resource book The Cool Stuff in Premiere Pro. 10 USEFUL DEFAULT KEYBOARD SHORTCUTS These work with the default layout. Go to the File menu (or Premiere Pro CC menu on Mac) and choose Keyboard Shortcuts > Keyboard Layout Preset > Adobe Premiere Pro Default if it isn’t already selected. 1. To expand and minimize your timeline tracks, use Shift+=/ -. Ctrl+=/ - (Cmd+=/ -) handles only video track height, and Alt+=/ - (Opt+=/ -) only audio track height. 2. The backslash key () will zoom your sequence to show everything in the timeline. Much faster than messing with the scroll bar. 3. Setting In and Out points with I and O is common. You can clear In and Out points with Ctrl+Shift+I (Opt+I), Ctrl+Shift+O (Opt+O), and Ctrl+Shift+X (Opt+X) for both. 4. X will mark the clip under the Playhead, but the / (forward slash) key will set In and Outs around all the clips you currently have selected. 5. D is the keyboard shortcut for Select Clip at Playhead. Immensely useful! 6. To Deselect All clips, effects or whatever is selected, hit Shift+Ctrl+A (Shift+Cmd+A on Mac). 7. Hitting Ctrl+K (Cmd+K) cuts the clip in two. It’s like using the Razor Tool, only faster. This works on active tracks. Add the Shift modifier key, and you cut all clips under the Playhead in two. 8. Ripple Trim Previous Edit to Playhead (Q) and Ripple Trim Next Edit to Playhead (W) are indispensable for doing rough cuts. Just move the Playhead to where you want to ripple trim, hit Q or W, and the region between the Playhead and the previous or next edit will be ripple deleted away. This kind of trimming is called Top & Tail Editing, and is by far the fastest way to remove the unwanted parts of a clip. Fun fact: Adobe engineers added these commands at the request of The Cool Stuff in Premiere Pro author Jarle Leirpoll. 9. F is for Match Frame. Park over any clip in the sequence and hit F to open the master clip in the Source Monitor at the exact same frame. 10. The opposite is the Reverse Match Frame command. When parked on a frame in the Source Monitor, Shift+R takes you to the first clip that frame appears in. Keep hitting Shift+R, and you will cycle through all the instances of that frame in the sequence. 10 KEYBOARD SHORTCUTS WORTH MAPPING Search for these in the Keyboard Shortcuts window, then drag the command to the shortcut key you want to map it to. When finished, you can save your custom keyboard layout preset for future use. 1. Your first step after creating or opening a new sequence should be to check your Sequence Settings. Why not map a shortcut for it? 2. Just as Zoom to Sequence zooms you all the way out, Zoom to Frame will zoom you all the way in to the frame level. Mapping this to Ctrl+ (Cmd+ on Mac) is easy to remember if you already use for Zoom to Sequence. 3. If you cut a clip in two but don’t remove any frames, that’s called a through edit. Join All Through Edits will rejoin any through edits in your selection. 4. Adding keyframes for audio volume or video position can mean a lot of clicking with the mouse – unless you map the Add or Remove Audio/ Video Keyframe commands. 5. Show Audio Time Units lets you zoom in – and adjust edits – at the subframe level in your Premiere Pro sequence. Map this command, use it, and watch the time indicators at the top of the Timeline panel change. This is a lifesaver for music edits. 6. The Move all Video/ Audio Sources Up/ Down commands work on your source patching, at the far left of your timeline. With these you can easily control where your video and audio clips go, when you cut them into your sequence. 7. If your V1, A1, A2, etc. source patches get out of control, reset them with the Default Source Assignment command. 8. Paste Attributes (for Motion, Opacity, Effects, etc.) is mapped by default, but Remove Attributes is not. 9. Select Nearest Edit Point as Trim In/ Out,Select Nearest Edit Point as Roll, and Select Nearest Edit Point as Ripple In/ Out are indispensible for trimming faster. Instead of hovering over a cut with the mouse, you can instantly select the type of trim you need to do (regular, roll, or ripple). These work on all active tracks. ADOBE PREMIERE SHORTCUTS PC 10. You can replace a clip in the Timeline with a new one from the Source Monitor or a bin, retaining any effects, animation and other adjustments you’ve made to the original clip in the Timeline. Replace with Clip From Source Monitor, From Source Monitor Match Frame, and From Bin are the replace edit commands you can map. For hundreds more Adobe Premiere Pro tips from experts Jarle Leirpoll, Dylan Osborn, Paul Murphy, and Andy Edwards, consult The Cool Stuff in Premiere Pro. About the Author KEYBOARD SHORTCUTS ADOBE PREMIERE Emmy-winning editor and Certified Premiere Pro Instructor, Dylan Osbornshows broadcasters and professional editors how to maximize their Adobe software in post-production. He has built workflows and conducted on-site training at CNN, CBS, A+E Networks, Spectrum SportsNet, and the EPiX channel and has been producing and editing broadcast television, short films, and documentaries in Los Angeles and New York City for over ten years. * Comments (0) * EDIUS 6 VIDEO FILTERS FREE DOWNLOAD APR 18, 2022 Free download edius 7 ita torrent Files at Software Informer. EDIUS supports real. 1 EDIUS Macro Generator 40 Shareware. Grass Valley Edius 6.08 Nirmal Filters,free download torrent, Transformer Oil Filter Machines, free download torrent, Transformer Oil Machine,Filtration Systems. 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Multimedia |Business |Messengers |Desktop |Development |Education |Games |Graphics |Home |Networking |Security |Servers |Utilities |Web Dev| Other Sort by: Relevance MUSK CODEC PACK MUSK Codec Pack is one stop solution for various type of codecs, with this tool for at least couple of years one will not need to download new codecs. Current version 6 also filters out using filters like CDDa and DivX. MUSK Codec Pack is also multilingual tool. * Publisher: MUSK Codec & Tools * Home page:www.muskcodec.com * Last updated: March 10th, 2008 EDIUS MACRO GENERATOR EMG speeds up your editing video with EDIUS 4 to 8. This program provides many additional features, like slide show, which creates an automatic slideshow movie on the timeline; the sequencer macro, which creates a movie automatically on the timeline, and the Marker Audio Generator, which automatically creates markers on the timeline. * Publisher: EDIUS Macro Generator * Last updated: February 2nd, 2016 EDIUS PRO When an editor has to wait for technology, creativity suffers. That doesn’t happen with EDIUS Pro 8. EDIUS Pro 8 means more formats and more resolutions in real time for the ability to Edit Anything, Fast. EDIUS Pro 8 is the perfect finishing tool for professional productions, including documentary and 4K theatrical productions. With more creative options and real-time, no-render editing of all popular SD, HD and even 4K formats, EDIUS Pro 8 is THE most versatile and fastest nonlinear editing software available. And EDIUS Pro 8 comes with GV Browser source management to prepare content for subsequent editing in EDIUS. * Publisher: Grass Valley Canada * Home page:www.grassvalley.com * Last updated: December 3rd, 2020 TMPGENC MOVIE PLUG-IN MPEG-2 FOR EDIUS PRO 5 TRIAL VERSION TMPGEnc Movie Plug-in MPEG-2 for EDIUS is a plug-in that brings Pegasys Inc.'s MPEG encoder functions to EDIUS and EDIUS Neo. Our original Encoding Engine's high quality MPEG-1 and MPEG-2 encodes are praised not only by consumer users, but also by computer game and CG animation makers, making it the trademark of the TMPGEnc series * Publisher: Pegasys Inc. * Home page:tmpgenc.pegasys-inc.com * Last updated: October 31st, 2011 EDIUS NEO Featuring a basic, entry-level range of tools and features, our EDIUS® Neo 3 software is ideal for those new to video editing. Yet, it also provides powerful nonlinear editing features common to all EDIUS solutions, such as real-time, multi-track, mixed-format HD/SD editing, chromakeying, titling, and both Blu-ray Disc and DVD authoring. * Publisher: Grass Valley * Home page:grassvalley.com * Last updated: June 24th, 2020 MP4 CLONER Offered as a free tool for customers who buy any ClonerAlliance’s video-capturing hardware tool, MP4 Cloner is actually a free tool for everyone wishing to make the most of their MP4 video files. With this attractive and easy-to-use utility you can trim, merge, convert, and burn to DVD or BD your best home movies and any other MP4 file as long as it’s been encoded using the H.264 codec. * Publisher: cloneralliance Inc. * Last updated: May 3rd, 2018 FREE RM TO AVI CONVERTER Free RM to AVI Converter Splitter is an easy-to-use utility to convert RealMedia RM/RMVB video files to AVI video files. This RM to AVI converter supports batch conversion mode, which allows you convert multiple RM files to desired AVI formats with just a few clicks. * Publisher: appfree * Last updated: September 23rd, 2011 TECHSMITH-CODEC Turn your existing screencasts into highly compressed AVI files. The free download includes the TSCC decoder for your PC. The TSCC codec does not expire. Techsmith Codec is available for free download from downloads page, get it and install on your personal computer. * Publisher: Techsmith * Home page:www.techsmith.com * Last updated: November 30th, 2011 DAILYMOTION VIDEO DOWNLOADER Download and save Dailymotion videos to your PC, Ipod, Iphone, PSP, Mobile Phone with one-click. Save the downloaded video into various formats: .avi, .mpeg, .flv, .wmv. Simply paste the URL of a video into the program, press Add, and the file will be downloaded into the selected folder. * Publisher: Chermenin Software, Inc. * Home page:www.downloadtoolz.com * Last updated: May 27th, 2020 AVI TO DVD MAKER Also enables you to convert AVI files directly to MPEG1 and MPEG2 whose dimension is at your control. The AVI to DVD Maker does not need external Video codec download. It uses its own Video codecs.It converts your files into a compliant DVD Video set of files and burns it on a DVD media. * Publisher: AVI to DVD * Home page:www.hexisoft.com * Last updated: May 26th, 2020 INTERNET DOWNLOAD MANAGER Internet Download Manager supports proxy servers, FTP and HTTP protocols, firewalls, redirects, cookies, authorization, MP3 audio and MPEG video content processing. 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This package enables you to play almost all audio and video formats using Windows Media Player. * Publisher: Codec Guide * Home page:www.codecguide.com * Last updated: December 29th, 2020 DIVX DivX is a professional software solution that provides you with the latest codecs. It includes the DivX Player, the DivX Web Player, the DivX Converter, and the DivX HEVC Plug-in. The included player supports various formats of audio and video: DivX, AVI, MKV, MP4, MOV. The DivX Converter allows you to create MKV videos and standard DivX video files. * Publisher: DivX LLC. * Home page:www.divx.com * Last updated: May 26th, 2020 XVID VIDEO CODEC EDIUS 6 DOWNLOAD SOFTWARE Xvid is a video codec for PC, whereas codec is an abbreviation for [co]der/[dec]oder, hence describes a program to encode and decode digital video. The purpose of encoding video data is to reduce redundancies – that means to make it smaller for faster transmission over computer networks or for more efficient storage on computer disks. * Publisher: XviD * Home page:www.xvid.com * Last updated: November 2nd, 2020 DBPOWERAMP DALET CODEC dBpoweramp Dalet Codec is a program that provides support for the Dalet format. The Dalet format is based on MP2 encoding, with some extra peak volume data for display purposes. It is a lossy audio codec, meaning that audio quality is lost during encoding. EDIUS 6 VIDEO FILTERS FREE DOWNLOAD FREE * Publisher: Illustrate * Home page:www.dbpoweramp.com * Last updated: November 21st, 2017 EDIUS 9 supports following effect plug-ins: EDIUS 9 Native Video Plug-ins Company Product Version Notes New Blue Amplify 6 Titler Pro 5/Ultimate EDIUS Pro 9 and Workgroup 9 users are eligible for a free download of NewBlue’s Titler Pro for EDIUS Titler Pro 6/Ultimate 171120 Total FX 5 171209 proDAD Mercalli PRO V4 Video Stabilizer 4.0.482.1 Heroglyph 4 Titler 4.0.257 VitaScene V3 Video Filter & Transitions 3.0.257 Adorage Video Filter & Transitions 3.0.117.2 ISP Robuskey 1.2.1 VideoStar VisTitle 2.6.0.6 Pegasys TMPGEnc Movie Plug-in AVC for EDIUS Pro 9 1.1.0.1 TMPGEnc Movie Plug-in MPEG-2 for EDIUS Pro 9 1.1.0.1 HitFilm Ignite Pro 2.0.7.123.35334 EDIUS 6.5 DOWNLOAD FREE EDIUS 9 OFX Bridge Video Plug-ins Company Product Version Notes Digital Anarchy Beauty Box 4.1 Boris FX Continuum 11 Mocha masking and tracking not supported. Temporal effects not supported. Sapphire 11.01 Mocha masking and tracking not supported. Temporal effects not supported. Red Giant Magic Bullet Suite 13 Cosmo II 2.0.2 Looks 4.0.4 Film 1.2.3 Mojo II 2.0.3 Renoiser 1.0.3 The OFX Bridge is now available to support certain OpenFX plug-ins from EDIUS version 8.1 onwards. Please note that there is no technical support for this plugin bridge. Any issues should be reported on the EDIUS user forums. 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