cyc.pnnl.gov Open in urlscan Pro
192.101.105.59 Public Scan

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URL:
https://cyc.pnnl.gov/
Submission Tags: falconsandbox
Submission: On November 06 via api (November 6th 2024, 6:25:14 pm UTC) from US — Scanned from CA

Form analysis
3 forms found in the DOM

Name: signon — POST

<form id="frmSubmit" onsubmit="deleteHostCookie();add_spinner('LogInButton');new Ajax.Request('/new-login', {'asynchronous':true,'parameters':Form.serialize(this),'onComplete':function(){remove_spinner('LogInButton');} });return false;" method="post"
  name="signon">
  <div style="padding: 10px">
    <input type="hidden" id="myurl" name="myurl" value="javascript:document.location">
    <table id="ltab" class="PTlogIn" cellspacing="8" cellpadding="0">
      <tbody>
        <tr id="FirstRow">
          <td>
            <div id="email1" align="right" style="font-size: smaller;  font-family: sans-serif;"> Email: </div>
          </td>
          <td><input type="text" style="font-size: smaller;  font-family: sans-serif;" size="16" id="emailname" name="emailname" accesskey="U" tabindex="30"></td>
        </tr>
        <tr id="SecondRow">
          <td>
            <div align="right" style="font-size: smaller;  font-family: sans-serif;"> Password:</div>
          </td>
          <td><input type="password" style="font-size:smaller; font-family:sans-serif;" size="16" id="password" name="password" tabindex="31" autocomplete="off"></td>
        </tr>
        <tr id="ThirdRow">
          <td></td>
          <td>
            <div style="font-size: smaller;  font-family: sans-serif; position: relative; top: -5px;">
              <a href="javascript:ForgotPasswordize()" tabindex="32">Forgot password?</a>
            </div>
          </td>
        </tr>
        <tr id="FourthRow">
          <td></td>
          <td>
            <div style="font-size: smaller;  font-family: sans-serif;">
              <input type="checkbox" name="rememberp" value="1" checked="checked" tabindex="33"> Keep me logged in
            </div>
          </td>
        </tr>
        <tr>
          <td id="ThirdPanel" colspan="2" style="padding-left: 12px; font-size: smaller; font-family: sans-serif;"> </td>
        </tr>
      </tbody>
    </table>
    <div id="lmsg"></div>
    <div style="text-align:center">
      <table border="0" cellspacing="10" cellpadding="0">
        <tbody>
          <tr>
            <td><button name="CancelButton" type="button" onclick="HideLogin()" tabindex="34">Cancel</button>&nbsp;&nbsp;</td>
            <td>&nbsp;&nbsp;&nbsp;<input id="LogInButton" name="LogInButton" type="submit" tabindex="35" value="Log In"></td>
            <td>&nbsp;&nbsp;&nbsp;<input id="LogInHelpButton" name="LogInHelpButton" type="button" onclick="window.location.href='/login-help.shtml';" tabindex="36" value="Help"></td>
          </tr>
        </tbody>
      </table> No account? <a href="/preferences.html?status=new" tabindex="36">Create one</a>.
    </div>
  </div>
</form>

Name: substring — /

<form class="searchMenu" action="/" name="substring" onsubmit="if (this.elements[1].value != '') {this.action= '/'+orgID()+'/substring-search?type=NIL&amp;object='+this.elements[1].value} else return(false);">
  <input id="QSType" name="type" type="hidden" value="NIL">
  <span id="QSContainer">
    <i class="fa fa-search" id="qsIcon"></i>
    <input id="QSTextBox" class="inputQuickSearch" name="object" size="47" spellcheck="false" placeholder="Enter a gene, protein, metabolite or pathway..." title="Enter one of the following (all searches conducted only within the selected organism, unless otherwise indicated):

A name or synonym for a compound, gene, protein or pathway.  Spaces, punctuation and case are ignored. E.g. pyruvate, trpA

Any substring of one of the above names, length >= 3. E.g. kinase, pyr

A full or partial EC number. E.g. 1.2.1.4, 1.3.1

A full or partial InChI-key. E.g. CKLJMWTZIZZHCS

An internal id (case-sensitive) for any compound, gene, protein, pathway, reaction or transcription-unit. E.g. CPLX0-3661, HEMN-RXN

An id (case-sensitive) from another database to which this database contains links, e.g. UniProt, KEGG, ChEBI. Note that our set of links is not complete; even if an external id search returns no result the object may still be in our database. E.g. P00561, NP_414543, C00047



(MetaCyc only) An organism or taxon name, to find pathways curated to that taxon. E.g. Bacillus, Shigella flexneri">
  </span>
  <input type="submit" name="quickSearch" class="searchButton" value="Quick Search">
  <input type="submit" name="geneSearch" class="searchButton" value="Gene Search" onclick="document.substring.type.value='GENE';">
</form>

/

<form id="multiorgSelectorForm" action="/"><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
      <div id="legend" style="max-width:900px"></div>
      </a>
  <div id="multiorg3columns"><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
        </a>
    <div><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
          <h3>Select One or More Databases: <span id="multiorgMaxLabel"></span></h3>
          </a>
      <div id="multiorgSelectorTabs" class="orgSelectorTabs" style="min-width:504px"><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
            </a>
        <ul><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
              </a>
          <li class="selected"><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2"></a><a href="#multiorgNameTab">By Name</a></li><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2">
              </a>
          <li><a href="https://cyc.pnnl.gov/NC12/NEW-IMAGE?type=PATHWAY&amp;object=PWY2T-8&amp;detail-level=2"></a><a href="#multiorgTaxTab">By Taxonomy</a></li>
          <li><a href="#multiorgMetadataTab">By Organism Properties</a></li>
          <li><a href="#multiorgSavedTab">My Lists</a></li>
        </ul>
        <div id="multiorgNameTab" class="multiorgselectorTab">
          <div class="orgselectorByNameContents">
            <div id="multiorgRightcontent" class="nameACColumn">
              <label id="multiorgFilterOptions" style="display:block;text-align:right;font-size:smaller"> Organism Filter: <select id="multiorgFilter" onchange="updateMultiOrgFilter()">
                </select>
              </label>
              <div id="multiorgselectorAutoComplete">
                <input id="multiorgInput" type="text" aria-label="Start typing a genus, species and/or strain name" placeholder="Start typing a genus, species and/or strain name" spellcheck="false" aria-autocomplete="list">
                <div id="multiorgContainer" style="font-style:italic"></div>
              </div>
              <div id="multiorgnum"></div>
            </div>
            <div class="alphabetFilter">
              <div class="screen-reader-only">
                <h3>Filter organisms by first letter</h3>
              </div>
              <a href="javascript:alphabetClick('a')">A</a><br>
              <a href="javascript:alphabetClick('b')">B</a><br>
              <a href="javascript:alphabetClick('c')">C</a><br>
              <a href="javascript:alphabetClick('d')">D</a><br>
              <a href="javascript:alphabetClick('e')">E</a><br>
              <a href="javascript:alphabetClick('f')">F</a><br>
              <a href="javascript:alphabetClick('g')">G</a><br>
              <a href="javascript:alphabetClick('h')">H</a><br>
              <a href="javascript:alphabetClick('i')">I</a><br>
              <a href="javascript:alphabetClick('j')">J</a><br>
              <a href="javascript:alphabetClick('k')">K</a><br>
              <a href="javascript:alphabetClick('l')">L</a><br>
              <a href="javascript:alphabetClick('m')">M</a><br>
              <a href="javascript:alphabetClick('n')">N</a><br>
              <a href="javascript:alphabetClick('o')">O</a><br>
              <a href="javascript:alphabetClick('p')">P</a><br>
              <a href="javascript:alphabetClick('q')">Q</a><br>
              <a href="javascript:alphabetClick('r')">R</a><br>
              <a href="javascript:alphabetClick('s')">S</a><br>
              <a href="javascript:alphabetClick('t')">T</a><br>
              <a href="javascript:alphabetClick('u')">U</a><br>
              <a href="javascript:alphabetClick('v')">V</a><br>
              <a href="javascript:alphabetClick('w')">W</a><br>
              <a href="javascript:alphabetClick('x')">X</a><br>
              <a href="javascript:alphabetClick('y')">Y</a><br>
              <a href="javascript:alphabetClick('z')">Z</a><br>
            </div>
          </div>
        </div>
        <div id="multiorgTaxTab" class="multiorgselectorTab">
          <label id="multiorgTaxAutoComplete">
            <span style="padding-right:5px">Search for taxon in taxonomy tree: </span>
            <input id="multiorgTaxName" type="text" style="width:360px">
            <div id="multiorgTaxContainer"></div>
          </label>
          <div id="multiorgTaxTreeContainer" style="min-width:489px;overflow-y:auto;margin-top:12px">
            <div id="multiorgSelectorTaxTree" class="ygtv-checkbox"></div>
          </div>
        </div>
        <div id="multiorgMetadataTab" style="min-width:489px;overflow-y:auto" class="multiorgselectorTab"> Find organism databases according to: <ul style="line-height:118%;margin-top:4px">
            <li>Organism characteristics, e.g. pathogenicity = human </li>
            <li>Collection metadata, e.g. human microbiome body site = blood </li>
            <li>Database properties, e.g. # (number) of Genes &lt; 500 </li>
          </ul>
          <div id="mclause0" class="flexRowWrap">
            <select id="mmdSlot0" onchange="updateMetadataSlot(0, &quot;m&quot;)" aria-label="Property for constraint 1">
              <option value="false" selected="">Select Property</option>
            </select>
            <select id="mmdConstraint0" onchange="updateMetadataSlot(0, &quot;m&quot;)" aria-label="Operator for constraint 1">
              <option value="c" selected="">is</option>
              <option value="nc">is not</option>
              <option value="a">has any value</option>
              <option value="n">has no value</option>
            </select>
            <div id="mkeywordInput0" style="display:none" class="flexRow">
              <select id="mmdKeywordOp0" onchange="updateForOp(0, 'mmdKeywordOp0', 'mmdSubstringAC0', 'm')" aria-label="Operator for constraint 1">
                <option value="enum" selected="">Exact Match</option>
                <option value="substr">Substring Match</option>
              </select>
              <div class="mdSubstringInput" id="mmdSubstringAC0">
                <input id="mmdKeyword0" type="text" aria-label="Value for constraint 1">
                <div id="mmdKWContainer0"></div>
              </div>
            </div>
            <div id="mnumericInput0" style="display:none" class="flexRow">
              <select id="mmdNumOp0" onchange="updateForOp(0, 'mmdNumOp0', 'mmdNum0', 'm')" aria-label="Numeric operator for constraint 1">
                <option value="e" selected="">= (approx.)</option>
                <option value="lt">&lt;</option>
                <option value="lte">≤</option>
                <option value="gt">&gt;</option>
                <option value="gte">≥</option>
                <option value="enum">Select Values</option>
              </select>
              <input id="mmdNum0" type="text" aria-label="Value for constraint 1">
            </div>
            <div id="mmdEnumContainer0" style="display:none">
              <select id="mmdEnum0" multiple="" aria-label="Value for constraint 1">
              </select>
            </div>
          </div>
          <div id="mclause1" style="display:none">
            <select id="mconnector1" aria-label="Connector for constraint 2">
              <option value="AND" selected="">AND</option>
              <option value="OR">OR</option>
            </select>
            <input id="mmdDelete1" type="button" value="Remove Constraint" onclick="mdRemoveClause(1, &quot;m&quot;)" aria-label="Remove Constraint 2">
            <br>
            <div class="flexRowWrap">
              <select id="mmdSlot1" onchange="updateMetadataSlot(1, &quot;m&quot;)" aria-label="Property for constraint 2">
                <option value="false" selected="">Select Property</option>
              </select>
              <select id="mmdConstraint1" onchange="updateMetadataSlot(1, &quot;m&quot;)" aria-label="Operator for constraint 2">
                <option value="c" selected="">is</option>
                <option value="nc">is not</option>
                <option value="a">has any value</option>
                <option value="n">has no value</option>
              </select>
              <div id="mkeywordInput1" style="display:none" class="flexRow">
                <select id="mmdKeywordOp1" onchange="updateForOp(1, 'mmdKeywordOp1', 'mmdSubstringAC1', 'm')" aria-label="Operator for constraint 2">
                  <option value="enum" selected="">Exact Match</option>
                  <option value="substr">Substring Match</option>
                </select>
                <div class="mdSubstringInput" id="mmdSubstringAC1">
                  <input id="mmdKeyword1" type="text" aria-label="Value for constraint 2">
                  <div id="mmdKWContainer1"></div>
                </div>
              </div>
              <div id="mnumericInput1" style="display:none" class="flexRow">
                <select id="mmdNumOp1" onchange="updateForOp(1, 'mmdNumOp1', 'mmdNum1', 'm')" aria-label="Numeric operator for constraint 2">
                  <option value="e" selected="">= (approx.)</option>
                  <option value="lt">&lt;</option>
                  <option value="lte">≤</option>
                  <option value="gt">&gt;</option>
                  <option value="gte">≥</option>
                  <option value="enum">Select Values</option>
                </select>
                <input id="mmdNum1" type="text" aria-label="Value for constraint 2">
              </div>
              <div id="mmdEnumContainer1" style="display:none">
                <select id="mmdEnum1" multiple="" aria-label="Value for constraint 2">
                </select>
              </div>
            </div>
          </div>
          <div id="mclause2" style="display:none">
            <select id="mconnector2" aria-label="Connector for constraint 3">
              <option value="and" selected="">AND</option>
              <option value="or">OR</option>
            </select>
            <input id="mmdDelete2" type="button" value="Remove Constraint" onclick="mdRemoveClause(2, &quot;m&quot;)" aria-label="Remove Constraint 3">
            <br>
            <div class="flexRowWrap">
              <select id="mmdSlot2" onchange="updateMetadataSlot(2, &quot;m&quot;)" aria-label="Property for constraint 3">
                <option value="false" selected="">Select Property</option>
              </select>
              <select id="mmdConstraint2" onchange="updateMetadataSlot(2, &quot;m&quot;)" aria-label="Operator for constraint 3">
                <option value="c" selected="">is</option>
                <option value="nc">is not</option>
                <option value="a">has any value</option>
                <option value="n">has no value</option>
              </select>
              <div id="mkeywordInput2" style="display:none" class="flexRow">
                <select id="mmdKeywordOp2" onchange="updateForOp(2, 'mmdKeywordOp2', 'mmdSubstringAC', 'm')" aria-label="Operator for constraint 3">
                  <option value="enum" selected="">Exact Match</option>
                  <option value="substr">Substring Match</option>
                </select>
                <div class="mdSubstringInput" id="mmdSubstringAC2">
                  <input id="mmdKeyword2" type="text" aria-label="Value for constraint 3">
                  <div id="mmdKWContainer2"></div>
                </div>
              </div>
              <div id="mnumericInput2" style="display:none" class="flexRow">
                <select id="mmdNumOp2" onchange="updateForOp(2, 'mmdNumOp2', 'mmdNum2', 'm')" aria-label="Numeric operator for constraint 3">
                  <option value="e" selected="">= (approx.)</option>
                  <option value="lt">&lt;</option>
                  <option value="lte">≤</option>
                  <option value="gt">&gt;</option>
                  <option value="gte">≥</option>
                  <option value="enum">Select Values</option>
                </select>
                <input id="mmdNum2" type="text" aria-label="Value for constraint 3">
              </div>
              <div id="mmdEnumContainer2" style="display:none">
                <select id="mmdEnum2" multiple="" aria-label="Value for constraint 3">
                </select>
              </div>
            </div>
          </div>
          <div id="mclause3" style="display:none">
            <select id="mconnector3" aria-label="Connector for constraint 4">
              <option value="and" selected="">AND</option>
              <option value="or">OR</option>
            </select>
            <input id="mmdDelete3" type="button" value="Remove Constraint" onclick="mdRemoveClause(3, &quot;m&quot;)" aria-label="Remove Constraint 4">
            <br>
            <div class="flexRowWrap">
              <select id="mmdSlot3" onchange="updateMetadataSlot(3, &quot;m&quot;)" aria-label="Property for constraint 4">
                <option value="false" selected="">Select Property</option>
              </select>
              <select id="mmdConstraint3" onchange="updateMetadataSlot(3, &quot;m&quot;)" aria-label="Operator for constraint 4">
                <option value="c" selected="">is</option>
                <option value="nc">is not</option>
                <option value="a">has any value</option>
                <option value="n">has no value</option>
              </select>
              <div id="mkeywordInput3" style="display:none" class="flexRow">
                <select id="mmdKeywordOp3" onchange="updateForOp(3, 'mmdKeywordOp3', 'mmdSubstringAC3', 'm')" aria-label="Operator for constraint 4">
                  <option value="enum" selected="">Exact Match</option>
                  <option value="substr">Substring Match</option>
                </select>
                <div class="mdSubstringInput" id="mmdSubstringAC3">
                  <input id="mmdKeyword3" type="text" aria-label="Value for constraint 4">
                  <div id="mmdKWContainer3"></div>
                </div>
              </div>
              <div id="mnumericInput3" style="display:none" class="flexRow">
                <select id="mmdNumOp3" onchange="updateForOp(3, 'mmdNumOp3', 'mmdNum3', 'm')" aria-label="Numeric operator for constraint 4">
                  <option value="e" selected="">= (approx.)</option>
                  <option value="lt">&lt;</option>
                  <option value="lte">≤</option>
                  <option value="gt">&gt;</option>
                  <option value="gte">≥</option>
                  <option value="enum">Select Values</option>
                </select>
                <input id="mmdNum3" type="text" aria-label="Value for constraint 4">
              </div>
              <div id="mmdEnumContainer3" style="display:none">
                <select id="mmdEnum3" multiple="" aria-label="Value for constraint 4">
                </select>
              </div>
            </div>
          </div>
          <div id="mclause4" style="display:none">
            <select id="mconnector4" aria-label="Connector for constraint 5">
              <option value="and" selected="">AND</option>
              <option value="or">OR</option>
            </select>
            <input id="mmdDelete4" type="button" value="Remove Constraint" onclick="mdRemoveClause(4, &quot;m&quot;)" aria-label="Remove Constraint 5">
            <br>
            <div class="flexRowWrap">
              <select id="mmdSlot4" onchange="updateMetadataSlot(4, &quot;m&quot;)" aria-label="Property for constraint 5">
                <option value="false" selected="">Select Property</option>
              </select>
              <select id="mmdConstraint4" onchange="updateMetadataSlot(4, &quot;m&quot;)" aria-label="Operator for constraint 5">
                <option value="c" selected="">is</option>
                <option value="nc">is not</option>
                <option value="a">has any value</option>
                <option value="n">has no value</option>
              </select>
              <div id="mkeywordInput4" style="display:none" class="flexRow">
                <select id="mmdKeywordOp4" onchange="updateForOp(4, 'mmdKeywordOp4', 'mmdSubstringAC4', 'm')" aria-label="Operator for constraint 5">
                  <option value="enum" selected="">Exact Match</option>
                  <option value="substr">Substring Match</option>
                </select>
                <div class="mdSubstringInput" id="mmdSubstringAC4">
                  <input id="mmdKeyword4" type="text" aria-label="Value for constraint 5">
                  <div id="mmdKWContainer4"></div>
                </div>
              </div>
              <div id="mnumericInput4" style="display:none">
                <select id="mmdNumOp4" onchange="updateForOp(4, 'mmdNumOp4', 'mmdNum4', 'm')" aria-label="Numeric operator for constraint 5">
                  <option value="e" selected="">= (approx.)</option>
                  <option value="lt">&lt;</option>
                  <option value="lte">≤</option>
                  <option value="gt">&gt;</option>
                  <option value="gte">≥</option>
                  <option value="enum">Select Values</option>
                </select>
                <input id="mmdNum4" type="text" aria-label="Value for constraint 5">
              </div>
              <div id="mmdEnumContainer4" style="display:none">
                <select id="mmdEnum4" multiple="" aria-label="Value for constraint 5">
                </select>
              </div>
            </div>
          </div>
          <div id="mclause5" style="display:none">
            <select id="mconnector5" aria-label="Connector for constraint 6">
              <option value="and" selected="">AND</option>
              <option value="or">OR</option>
            </select>
            <input id="mmdDelete5" type="button" value="Remove Constraint" onclick="mdRemoveClause(5, &quot;m&quot;)" aria-label="Remove Constraint 6">
            <br>
            <div class="flexRowWrap">
              <select id="mmdSlot5" onchange="updateMetadataSlot(5, &quot;m&quot;)" aria-label="Property for constraint 6">
                <option value="false" selected="">Select Property</option>
              </select>
              <select id="mmdConstraint5" onchange="updateMetadataSlot(5, &quot;m&quot;)" aria-label="Operator for constraint 6">
                <option value="c" selected="">is</option>
                <option value="nc">is not</option>
                <option value="a">has any value</option>
                <option value="n">has no value</option>
              </select>
              <div id="mkeywordInput5" style="display:none" class="flexRow">
                <select id="mmdKeywordOp5" onchange="updateForOp(5, 'mmdKeywordOp5', 'mmdSubstringAC5', 'm')" aria-label="Operator for constraint 6">
                  <option value="enum" selected="">Exact Match</option>
                  <option value="substr">Substring Match</option>
                </select>
                <div class="mdSubstringInput" id="mmdSubstringAC5">
                  <input id="mmdKeyword5" type="text" aria-label="Value for constraint 6">
                  <div id="mmdKWContainer5"></div>
                </div>
              </div>
              <div id="mnumericInput5" style="display:none" class="flexRow">
                <select id="mmdNumOp5" onchange="updateForOp(5, 'mmdNumOp5', 'mmdNum5', 'm')" aria-label="Numeric operator for constraint 6">
                  <option value="e" selected="">= (approx.)</option>
                  <option value="lt">&lt;</option>
                  <option value="lte">≤</option>
                  <option value="gt">&gt;</option>
                  <option value="gte">≥</option>
                  <option value="enum">Select Values</option>
                </select>
                <input id="mmdNum5" type="text" aria-label="Value for constraint 6">
              </div>
              <div id="mmdEnumContainer5" style="display:none">
                <select id="mmdEnum5" multiple="" aria-label="Value for constraint 6">
                </select>
              </div>
            </div>
          </div>
          <br>
          <div class="flexRow">
            <input id="maddClause" type="button" value="Add Constraint" onclick="mdAddClause(&quot;m&quot;)" style="display:none">
            <input id="mmdSearch" type="button" value="Find Organisms" onclick="processMdQuery(true, &quot;m&quot;)">
          </div>
          <div id="mmdResults" class="yui3-skin-sam"></div>
        </div>
        <div id="multiorgSavedTab" class="multiorgselectorTab" style="overflow-y:auto">
          <div style="padding-bottom:20px">
            <span>Database lists include both predefined lists and lists that are saved as SmartTables that you can edit from your <a href="/smarttables" target="new.window">My
                  SmartTables</a> page. To add all organisms from a saved list, check the box next to the list name and then click the "Add" button. </span>
          </div>
          <div id="multiorgSavedTree" class="ygtv-checkbox"></div>
          <div class="requiresLogin" style="padding-top:50px">
            <span class="requiresNoSavedOrglist requiresLogin"> You have no saved database lists </span>
          </div>
          <div class="requiresNotLoggedIn" style="padding-top:50px"> Log in and reload this page to access your saved database lists. </div>
        </div>
      </div>
      <div id="tierKey" style="padding-top:3px">
        <span class="tier1">Tier 1</span> and <span class="tier2">Tier 2</span> databases are displayed with orange and blue backgrounds, respectively.
      </div>
    </div>
    <div class="buttons flexCol" style="gap:4px;margin:3px;">
      <div id="multiorgSelectAllRow">
        <input type="button" id="multiorgSelectAllBtn" class="disableWhenAllSelected" value="Select All" onclick="multiorgSelectAll()">
      </div>
      <input type="button" id="multiorgAddToList" class="disableWhenAllSelected" value="Add →" onclick="addNewSelections()">
      <input type="button" id="multiorgDeleteFromList" class="disableWhenAllSelected" value="Remove ←" onclick="deleteMultiorgOptions(false)">
      <input type="button" id="multiorgClearAll" value="Clear All" onclick="deleteMultiorgOptions(true)">
    </div>
    <div>
      <label for="multiorgSelection">
        <h3>Current Selection</h3>
      </label>
      <span id="multiNumSelected">0</span> databases or taxa currently selected. <p>
      </p>
      <div id="multiorgSelectionDiv">
        <select multiple="" id="multiorgSelection">
        </select>
      </div>
      <div class="requiresLogin" id="rememberAsST">
        <fieldset style="border:none;padding:0">
          <legend style="padding-top:3px"> Remember Selection as SmartTable:</legend>
          <label>
            <input type="radio" name="stSave" value="new" checked=""> Create New </label>
          <label>
            <input type="radio" name="stSave" value="old"> Update Existing </label>
          <div style="padding-top:3px">
            <input type="text" id="orglistname" style="width:200px" placeholder="Enter SmartTable Name">
            <select id="savedOrglistUpdate" class="savedOrglistSelectEl" aria-label="Select an organism SmartTable to update" style="display:none">
            </select>
            <input type="button" value="Save" title="Clicking this button will save or update
		       the specified organism SmartTable to refer to
		       the currently selected databases. It will not
		       close this dialog or submit your choices.  If
		       no databases are currently selected, clicking
		       this button will cause the named SmartTable to
		       be deleted. SmartTables saved here can be
		       accessed from the My Lists tab.">
          </div>
        </fieldset>
      </div>
      <div class="requiresNotLoggedIn" style="padding-top:3px"> Note: if you create a user account and log in, you can save your database lists for next time. </div>
    </div>
  </div>
</form>

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Neurospora crassa


OPERATIONS

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WHY CREATE AN ACCOUNT?

An account provides several benefits. Through your account you can:
 * BioCyc accounts enable access to other sites such as EcoCyc and MetaCyc
 * Create SmartTables of genes, metabolites, etc, and, optionally, associated
   datasets:
   * analyze them,
   * store them,
   * and share them with colleagues
 * Run and store metabolic models
 * Customize the appearance of pages
 * Store organism sets for comparative operations
 * Configure default settings for the Omics Viewers
 * Receive important email updates
 * Aid us in tracking site usage to ensure continued funding for this site
 * Participate in surveys about improvments for this website


Create New Account
Searching Neurospora crassa   change organism database
 * Home
 * Search
    * Search Genes, Proteins or RNAs
    * Search Compounds
    * Search Reactions
    * Search Pathways
    * Search DNA or mRNA Sites
    * Search Growth Media
   
    * Advanced Search
   
    * Google Search of this Site

 * Genome
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    * Genome Overview
    * Circular Genome Viewer
    * Regulatory Overview
    * Browse Gene Ontology
    * Map Sequence Coordinates

 * Metabolism
    * Cellular Overview
    * Run Metabolic Model
    * Dead-end Metabolites
    * Chokepoint Reactions
    * Metabolic Route Search
    * Metabolic Network Explorer
    * Metabolite Translation Service
    * Pathway Collages
    * Browse Pathway Ontology
    * Browse Enzyme Commission Ontology
    * Browse Compound Ontology
    * Generate Metabolic Map Poster

 * Analysis
    * Comparative Analysis
    * Comparative Genome Dashboard
    * Omics Data Analysis
    * Omics Dashboard
    * Summary Statistics
    * Metabolomics Pathway Coverage
    * Multiple Sequence Alignment
    * Reports
       * History of updates
       * Pathway evidence (sorted by score)
       * Pathway evidence (sorted by class)
       * Pathway holes

 * SmartTables
    * Public SmartTables
    * Special SmartTables

 * Help
    * Searching
    * Website User Guide
    * Glossary
    * PGDB Concepts Guide
   
    * Contact Us/Support




PATHWAY/GENOME DATABASES AVAILABLE AT PNNL


PREDICTION OF METABOLITE CONCENTRATIONS, RATE CONSTANTS AND POST-TRANSLATIONAL
REGULATION USING MAXIMUM ENTROPY-BASED SIMULATIONS WITH APPLICATION TO CENTRAL
METABOLISM OF NEUROSPORA CRASSA

 * Power Energy Characteristics of the central metabolism of Neurospora crassa
 * Glycolysis/PPP/TCA cycle of Neurospora crassa
   


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Specify List of Organism Databases


SELECT ONE OR MORE DATABASES:

   
 * By Name
   
 * By Taxonomy
 * By Organism Properties
 * My Lists

Organism Filter:




FILTER ORGANISMS BY FIRST LETTER

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Search for taxon in taxonomy tree:


Find organism databases according to:
 * Organism characteristics, e.g. pathogenicity = human
 * Collection metadata, e.g. human microbiome body site = blood
 * Database properties, e.g. # (number) of Genes < 500

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values

AND OR

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values

AND OR

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values

AND OR

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values

AND OR

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values

AND OR

Select Property is is not has any value has no value
Exact Match Substring Match

= (approx.) < ≤ > ≥ Select Values




Database lists include both predefined lists and lists that are saved as
SmartTables that you can edit from your My SmartTables page. To add all
organisms from a saved list, check the box next to the list name and then click
the "Add" button.

You have no saved database lists
Log in and reload this page to access your saved database lists.
Tier 1 and Tier 2 databases are displayed with orange and blue backgrounds,
respectively.



CURRENT SELECTION

0 databases or taxa currently selected.




Remember Selection as SmartTable: Create New Update Existing

Note: if you create a user account and log in, you can save your database lists
for next time.

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