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Text Content

 * HMP1
   * iHMP
   * 

HMP1 NIH Human Microbiome Project
 * 
 * Overview
   * About the HMP
   * Data Model
   * FAQ
   * Data Use Policy
 * Membership
 * Publications
 * Resources
   * Download Instructions
   * Tools & Technology
 * Data
   * HMP Portal
   * Search
 * Outreach
   * Workshops
   * Feedback
 * Login
    * Username*
    * Password*
    * Login
    * Remember Me?
   
   Login not recognized, please retry.
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   Register




WELCOME



Welcome to the Data Analysis and Coordination Center (DACC) for the Human
Microbiome Project (HMP). The HMP was supported by the National Institutes of
Health (NIH) Common Fund from 2007 through 2016. This area of the website
focuses on the first of a two-phase effort, frequently referred to as HMP1,
which ran from 2008 through 2013. From the Common Fund website:

> The Human Microbiome Project has transitioned from Common Fund support. Common
> Fund programs are strategic investments that achieve a set of high-impact
> goals within a 5-10 year timeframe. At the conclusion of each program,
> deliverables transition to other sources of support or use by the broader
> scientific community. The HMP was supported by the Common Fund from 2007 to
> 2016. Non-HMP investment in microbiome research at the NIH has increased over
> forty-fold since the inception of the HMP and spans over 20 of the NIH
> Institutes and Centers.
> Please note that since the HMP is no longer supported by the Common Fund, the
> program website is being maintained as an archive and will not be updated on a
> regular basis.

The overall mission of the HMP was to generate resources to facilitate
characterization of the human microbiota to further our understanding of how the
microbiome impacts human health and disease. The initial phase of the project,
HMP1, established in 2008, characterized the microbial communities from 300
healthy individuals, across several different sites on the human body: nasal
passages, oral cavity, skin, gastrointestinal tract, and urogenital tract. 16S
rRNA sequencing was performed to characterize the complexity of microbial
communities at each body site, and to begin to ask whether there is a core
healthy microbiome. Metagenomic whole genome shotgun (wgs) sequencing provided
insights into the functions and pathways present in the human microbiome. In
total, over 32 terabytes of data were generated during this first phase of the
project, all publicly available through the HMP Data Portal.

HMP1 was an interdisciplinary effort comprising four sequencing centers (the
Broad Institute, Baylor College of Medicine, Washington University School of
Medicine, and the J. Craig Venter Institute), a Data Analysis and Coordination
Center (DACC), and several independent investigators involved in demonstration
projects looking more closely at the associations between the microbiome and
human health and disease, tool and technology development, and identification of
ethical implications.

This site provides background information and resources associated with HMP1,
including

 * The Legacy HMP1 Data Browser, providing access to specific HMP1 datasets
   described in 2012 and 2017 landmark Nature papers.
 * The HMP Data Portal, providing a repository of diverse human microbiome
   datasets from both HMP1 and the second phase of the project, iHMP, allowing
   researchers to query and retrieve metagenomic, metatranscriptomic, human
   genetic, microbial culture, and many other data types across both project.




If you are NEW TO EXPLORING HMP1 DATA or are interested in more details about
project organization, we recommend you begin with the HMP1 Data Model.
Member Organizations

 * Overview
   * About
   * Data Model
   * FAQ
   * Data Use Policy
 * Membership
 * Publications
 * Resources
   * Download Instructions
   * Tools & Technology
 * Data  
   * HMP Portal  

 * Contact
 * Privacy Policy

 * 
 * 
 * 

Funding By:

2024 | Institute for Genome Sciences, University of Maryland School of Medicine
 * Overview
   * About the HMP
   * Data Model
   * FAQ
   * Data Use Policy
   

 * Membership

 * Publications

 * Resources
   * Download Instructions
   * Tools & Technology

 * Data
   * HMP Portal
     

 * Outreach
   * Workshops
   * Feedback

 * Login
    * Username*
    * Password*
    * Login
    * Remember Me?
   
   Login not recognized, please retry.
   Forgot your password?
   Register

 * 
 * 
 *