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GRAINGENES

A Database for Triticeae and Avena


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HOT TOPICS


WHEAT GENE CATALOGUE 2024 IS RELEASED (COVERING ALL WGC CURATIONS UNTIL 2024)

[Posted on 2 October 2024.]
[WGC 2024 files (including PDF and WORD files can be accessed at
https://wheat.pw.usda.gov/GG3/Wheat_Gene_Catalog_Documents in GrainGenes]
[Note that the otherWheat Gene Catalogue documents can be accessed at
https://wheat.pw.usda.gov/GG3/wgc in GrainGenes]


CHROMOSOME-LEVEL GENOME ASSEMBLY OF THE DIPLOID OAT SPECIES AVENA LONGIGLUMIS

[Posted in April 2024]

Qing et al. published the genome assembly of Avena longilgumis (wild relative of
oat Avena sativa).


RELEASED: TRITICUM TURGIDUM DURUM WHEAT SVEVO REL. 2.0 PSEUDOMOLECULES

The Triticum turgidum Durum Wheat Svevo Rel. 2.0 pseudomolecules (2024) is made
available under the prepublication data sharing principle of the Toronto
agreement (Toronto International Data Release Workshop Authors. Prepublication
data sharing. Nature 461, 168–170 (2009) https://doi.org/10.1038/461168a).


COMMUNITY NOTICE – SOME APPLICATIONS WILL NOT BE AVAILABLE IN GRAINGENES FOR
SECURITY UPDATES

Dear GrainGenes Users,

When we were performing regular testing of GrainGenes IT systems, we identified
an IT security issue that needed to be addressed immediately. The issue affected
the following applications in GrainGenes:
1. GSP: Genome Specific Primers,
2. RJPrimers,
3. BatchPrimer3
4. PIECE2


CASA-BIO: CALL TO ALL BIOECONOMY RESEARCHERS AND DEVELOPERS

Calling all Bioeconomy Researchers and Developers,


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SPECIES PORTALS ON GRAINGENES

 * Annual Wheat Newsletter
 * Barley Boulevard
 * Barley Genetics Newsletter
 * Global Durum Genomic Resources
 * Oat Newsletter
 * Oat Nomenclature
 * PanOat
 * Wheat Gene Catalogue


UPCOMING EVENTS

 * National Fusarium Head Blight Forum in Austin, Texas
   Dec 8 2024 to Dec 10 2024


GRAINGENES UPDATES

 * October 2024: Wheat Gene Catalogue 2024 is released (covering all WGC
   curations)
 * September 2024: 48 genes, 5 QTL, 158 loci from barley papers were curated.
 * September 2024: 113 wheat QTL from CIMMYT were curated.
 * September 2024: Wheat Cultivar Chuanmai 104 genome browser and BLAST were
   created.
 * September 2024: Added Chromatin Dynamics in Embryogenesis tracks to IWGSC v1
 * August 2024: Aegilops tauschii genome resource added.
 * July 2024: HAPMAP track was added for Zavitan 2.0
 * July 2024: 4708 Wheat QTL from the Watkins Collection now on GrainGenes
 * July 2024: Wheat Functional Genes from the Watkins Collection were updated in
   GrainGenes and in the IWGSC Chinese Spring RefSeq v1 genome browser
 * July 2024: GSP tool is redeployed in GrainGenes
 * June 2024: Video Tutorial - Search Browsers for Gene/Transcript
 * May 2024: GrainGenes BLAST has now a pre-populated link to NCBI BLAST (which
   provides views such as Distance Tree)

more updates....


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ABOUT GRAINGENES




GrainGenes is a digital platform that serves small grains research communities
as a centralized repository for peer-reviewed and curated data, and as a
facilitator for community activities. It has been hard-funded by the U.S.
Department of Agriculture-Agricultural Research Service to ensure long-term data
sustainability through a functional and integrated web interface for wheat,
barley, oat, and rye. Please let us know how GrainGenes can improve its
interface, tools, and services by using the Feedback button. Please cite us:
Blake et al, Database, 2019.