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CAFÉ VARIOME

ADMIN@CAFEVARIOME.ORG

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CAFE VARIOME

 * Home
 * Why CafeVariome
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 * Our partners
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HEALTH DATA DISCOVERY

Café Variome is a flexible web-based, data discovery tool that can be quickly
installed by any biomedical data owner to enable the “existence” rather than the
“substance” of the data to be discovered.


DEMO

Version 3 Version 2




FAST, MEMORY-EFFICIENT, AND SECURE DISCOVERY

Café Variome executes queries at a high speed and has very little memory
foot-print enabling it to be hosted on small servers. Apart from discovery,
large data files of millions of records can be indexed in a memory-efficient way
using the data input pipeline of Café Variome.
Café Variome relies on OIDC providers for authentication. Queries have a bearer
token used to authenticate and authorise data discovery.


SECURE

Cafe Variome ensures data security through robust access controls, encryption,
and a design that enables data discovery without exposing sensitive information,
making it a secure platform for data sharing.


MEMORY-EFFICIENT

Cafe Variome uses optimized data storage and indexing to manage large datasets
efficiently, conserving memory resources and ensuring the system remains
effective and accessible across different hardware environments.


FAST

Cafe Variome offers efficient data indexing and retrieval for quick searches
across extensive databases, significantly speeding up the data discovery process
for researchers and clinicians.


USER-FRIENDLY

Cafe Variome offers an intuitive web-based interface and straightforward
functionalities, making biomedical data discovery and management accessible and
efficient for users of all technical levels.


OUR PARTNERS


UNIVERSITY OF LEICESTER


EUROPEAN PLATFORM FOR NEURODEGENERATIVE DISORDERS


EUROPEAN JOINT PROGRAMME ON RARE DISEASES


WHY CAFE VARIOME?

Health data sharing, typically limited to small interactions, fails to realize
the full value of the data, conflicting with FAIR principles. Cafe Variome
addresses this by allowing data controllers to maintain control while enabling
data discovery through a flexible, adaptive query interface. It facilitates
users in finding specific data for various purposes, like cohort studies or rare
disease patient matching.

FEDERATED NETWORKS

Networks allow data discovery to go beyond an individual Café Variome instance.
Administrators can create new networks as well as request to join existing ones.

USER-FRIENDLY INTERFACE

The administration dashboard gives you full control over your Café Variome
installation. You can manage data sources, networks, users list and user access
all in one dashboard.

BEACON ENDPOINTS

Café Variome implements a Beacon V2.0 API. Beacon is an API that aims to make
discovering genomic data easier. By uploading or inserting data to Café Variome,
you have the option to make it discoverable through Beacon.


DISCOVERY BASED ON SEMANTIC SIMILARITY

Use of ontology terms in patient data has become more prevalent. Café Variome
can work with any health data ontology and can be configured to automatically
detect ontology terms in raw data. This enables Café Variome to connect patients
to nodes in ontologies. Similarity scores among ontology terms are calculated.
Therefore, you can discover similar patients based on phenotypes, diseases, or
medicine that they use.

Copyright © 2024. Powered by Café Variome
By Bioinformatics and Health Data Science Group