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WELCOME TO THE I2B2 COMMUNITY WIKI


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 * Created by nich, last modified by Reeta Metta on Sep 30, 2024

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 * i2b2 is an open-source clinical data warehousing and analytics research
   platform used at over 250 locations worldwide. i2b2 enables sharing,
   integration, standardization, and analysis of heterogenous data from
   healthcare and research.
   
 * The i2b2 Community is a life-sciences-focused open-source, open-data
   community. This wiki is the central place for the i2b2 Community to
   communicate and share projects with other users. Here you will find the
   latest information on the i2b2 Software, what others in the community are
   doing, and find resources to help answer any questions you may have about the
   i2b2. 
 * i2b2 is part of the i2b2 tranSMART Foundation, which brings together an
   NIH-funded enterprise clinical research platform (i2b2) and pharma-developed
   software for translational research studies (tranSMART).




Project
Management
Ontology
Management
Data
Repository
(CRC)
File
Repository
(CRC)
Workflow
Framework
Identity
Management
i2b2
Web Client
Application
i2b2
Workbench
Application
      
      
i2b2 Hive



Older, unsupported add-ons are on the Archived Optional Components page.








DOCUMENTATION


GET SOFTWARE


CURRENT ANNOUNCEMENTS


GETTING STARTED

 * * Installation Guide
   * Upgrade Guide
   * Videos and Tutorials
   * NEW - i2b2 Common Data Model Guide
   * NEW - Bundle Install Guides (beta version!) 


FOR DEVELOPERS

 * * Server-side Messaging
   * Server Architecture
   * Server-side Design
   * Web Client Design
   * Release Notes


FOR END USERS

Web Client Help

Workbench User Guide






Software

Version



i2b2 Binary Download 1.8.1a (September 2024)

Download Full

Download Upgrade

i2b2 Core Server Source Code

1.8.1a (September 2024)

Download

i2b2 Core Data Source Code

1.8.1a (September 2024)

Download

i2b2 Web Client

1.8.1a (September 2024)

Download

i2b2 Documentation

1.8.1a (September 2024)

Release Notes Release Notes PDF Upgrade Guide Install Guide

i2b2 VMWare Server/Client Demo

1.8.1a

Coming Soon

i2b2 Docker Demo (unofficial)1.8.0 

Installation Guide

i2b2 Workbench

2.0.01 (October 17, 2017)

Download









09/2024:

 * i2b2 release 1.8.1a available! (includes fix for breakdown queuing for SQL
   server and Postgres)
 * Data Exporter extension for i2b2
 * ACT Version 4.1 Ontology
 * i2b2 on OMOP for Postgres database
 * New webclient with Admin Console
 * Digital Twin Bundle








NEWEST I2B2 COMMUNITY PROJECTS


LINKS AND OLDER ANNOUNCEMENTS






Accrual to Clinical Trials The Accrual to Clinical Trials (ACT) project goal is
to create a federated network of National Clinical and Translational Science
Award (CTSA) Consortium institutions to significantly increase participant
accrual to the nation's highest priority clinical trials. Multi-fact Table The
multi-fact table project is a new feature introduced in 1.7.09 that enables the
i2b2 to query more than one fact table. This new feature empowers the i2b2 to
adapt to the needs of such projects as the Patient Centered Outcome Research
Institute (PCORI) network and the Observational Medical Outcomes Partnership
(OMOP) Common Data Model (CDM). It can also be used for sites that want to be
able to query both genomic and phenotype data but don't want the data to reside
in a single table. OMOP The legacy i2b2 data model is comprised of a central
fact table (observation_fact) surrounded by multiple dimension tables (star
schema). In the Observation Medical Outcomes Partnership (OMOP) Clinical Data
Model (CDM) rather than a central fact table, we have a collection of them
distinguished by domain: procedures, condition, drug, measurement, observation,
etc. In this project, we modify the CRC to run queries against multiple domain
fact tables as dictated by the metadata. RDF to i2b2 Conversion Synthea data in
i2b2 Synthea synthetic data can now be loaded into i2b2 for testing. A 63k
sample of SyntheticMass patients is available for download. i2b2 on Genomics
Data This community project extends the current i2b2 query functionality by
providing the ability to query for genotyped subjects by specific annotations
related to genetic variants. Also, new query widgets have been built in the i2b2
web client that leverages existing i2b2 infrastructure for querying large
strings of text stored in the observation_blob field of the observation_fact
table.



See All Community Projects


IMPORTANT LINKS:


 * SHRINE APPROVED
   
   1.7.13 Release and Classic webclient downloads are available at i2b2 Software
   Downloads Links - All Releases

 * i2b2 tranSMART Working Groups
 * New Project: i2b2 on OMOP
 * New Project:  i2b2 on Genomics Data


OLDER ANNOUNCEMENTS:

I2B2 LOG4J VULNERABILITY UPDATE

NONE OF THE VERSIONS OF I2B2 ARE USING THE AFFECTED (VULNERABLE) VERSION OF
LOG4J. FOR VERSIONS PRIOR TO 1.7.13, A PATCH IS AVAILABLE TO REMOVE THE FEATURES
IN LOG4J WITH SECURITY FLAWS. I2B2 1.7.13 HAS BEEN UPGRADED TO THE LATEST
VERSION OF LOG4J.

--------------------------------------------------------------------------------

CONSORTIUM FOR CLINICAL CHARACTERIZATION OF COVID-19 BY EHR (4CE)

4CE is an international consortium for electronic health record (EHR)
data-driven studies of the COVID-19 pandemic. The goal of this effort—led by
the i2b2 international academics users group—is to inform doctors,
epidemiologists and the public about COVID-19 patients with data acquired
through the health care process.

CLICK HERE FOR MORE INFORMATION






IF YOU HAVE QUESTIONS CONTACT US HERE.



















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PAGES


 * i2b2 Community Projects
   
 * i2b2 Documentation
   
 * i2b2 Software
    * i2b2 Hive
      
    * i2b2 Software Downloads Links
      
    * i2b2 Software Downloads Links-1.8.1
      
    * i2b2 Software Downloads Links-1.8.1a
      

 * i2b2 Software Releases Available for Download
    * All Releases
      




RECENTLY UPDATED


 * i2b2 Software Downloads Links-1.8.1a
    * updated Sep 30, 2024
    * view change

 * i2b2 Software Downloads Links
    * updated Sep 30, 2024
    * view change

 * Welcome to the i2b2 Community Wiki
    * updated Sep 30, 2024
    * view change

 * i2b2 Software Downloads Links-1.8.1a
    * created Sep 30, 2024

 * I2B2_Webclient_Help_Documentation_7_28_23.pdf
    * attached Sep 30, 2024

Show More





 * i2b2 tranSMART Foundation
   * About Us
   * Upcoming Events
   * News
 * Community Resources
   * Accrual to Clinical Trial (ACT)
   * i2b2 Working Groups
 * i2b2 Development
   * Release Management
   * i2b2 Repositories
   * Development Tracking System (JIRA)





Powered by Atlassian Confluence6.15.10 and the Enterprise Theme by bitvoodoo.

 * Project Management
 * Core Server Side i2b2 Cell
 * This cell is used to provide user authentication and manage group and role
   information. It also keeps track of what cells are part of the hive.
 * Installation Guide
 * Messaging Guide
 * Design Document
 * Go to Download


 * Ontology Management
 * Core Server Side i2b2 Cell
 * This cell manages the terminology and knowledge information typically used in
   the hive. It is contacted for, or distributes knowledge to, cells during most
   of the hives transactions.
 * Installation Guide
 * Messaging Guide
 * Design Document
 * Architecture Document
 * Go to Download


 * Data Repository (CRC)
 * Core Server Side i2b2 Cell
 * This cell holds the phenotypic and genotypic data of the hive in a structured
   format. Data queries and visualizations are available through this cell.
 * Installation Guide
 * Messaging Guide
 * Design Document
 * Architecture Document
 * Plugin Analysis Document
 * Go to Download


 * File Repository
 * Core Server Side i2b2 Cell
 * This cell holds large files of data including radiological images and genetic
   sequences. The files are generally referenced from the Data Repository Cell.
 * Installation Guide
 * Messaging Guide
 * Architecture Document
 * Go to Download


 * Workplace Framework
 * Core Server Side i2b2 Cell
 * This cell is used to process information in steps through various parts of
   the hive. Most processed information will come to reside in the Data
   Repository Cell or as a display to the user.
 * Installation Guide
 * Messaging Guide
 * Design Document
 * Architecture Document
 * Go to Download


 * Identity Management
 * Core Server Side i2b2 Cell
 * This cell is used to manage a patient's protected health information in a
   manner consistent with the HIPAA privacy rule. Patient data is available only
   as a HIPAA defined "Limited Data Set" to most of the hive.
 * Installation Guide
 * Messaging Guide
 * Design Document
 * Architecture Document
 * Go to Download


 * i2b2 Web Client
 * The i2b2 Web Client is a collection of client-side components designed as an
   YUI AJAX-based plug-ins that communicate with i2b2 Cells and allow the
   investigator to query and display the data of the hive.
 * Install Guide
 * Project Request Guide
 * Go to Download


 * i2b2 Workbench
 * The i2b2 Workbench is a collection of client-side components designed as
   Eclipse-based java plug-ins that communicate with i2b2 Cells and allow the
   investigator to query, analyze, and display the data of the hive, generally
   in greater depth than the web client.
 * Installation Guide
 * Tutorial Document
 * Developer's Guide
 * Go to Download
 * Go to Download Source


 * i2b2 Hive
 * The Hive is a collection of software modules that create a system to allow
   the use of patient data for research.
 * i2b2 Hive Introduction
 * i2b2 Message Wrapper
 * i2b2 Patient Data Object


 1. i2b2 Community Wiki
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